Wall clock time and date at job start Tue Mar 31 2020 07:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46960 * 2 1 4 4 H 1.09001 * 109.46957 * 179.82275 * 3 2 1 5 5 C 1.50694 * 109.47820 * 299.82551 * 3 2 1 6 6 H 1.08001 * 120.00084 * 119.99787 * 5 3 2 7 7 C 1.37877 * 119.99879 * 300.00599 * 5 3 2 8 8 N 1.31519 * 120.00278 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99965 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47544 * 59.99535 * 9 7 5 11 11 H 1.48503 * 109.46957 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47171 * 299.99097 * 9 7 5 13 13 N 1.46906 * 109.46735 * 59.82781 * 3 2 1 14 14 C 1.46903 * 110.99715 * 85.90742 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.63196 * 14 13 3 16 16 C 1.37867 * 120.26077 * 114.72320 * 15 14 13 17 17 C 1.39671 * 118.80956 * 179.76604 * 16 15 14 18 18 O 1.22096 * 120.19667 * 180.29017 * 17 16 15 19 19 N 1.36343 * 119.60127 * 0.47383 * 17 16 15 20 20 C 1.37161 * 127.31194 * 179.75957 * 19 17 16 21 21 C 1.30885 * 116.61713 * 180.02562 * 20 19 17 22 22 S 1.75725 * 109.69995 * 359.97438 * 21 20 19 23 23 C 1.35374 * 118.85949 * 359.79083 * 19 17 16 24 24 N 1.32431 * 120.25749 * 294.99589 * 15 14 13 25 25 H 1.09002 * 109.47314 * 55.59117 * 1 2 3 26 26 H 1.09001 * 109.47122 * 295.58873 * 1 2 3 27 27 H 1.09000 * 109.46766 * 175.58629 * 1 2 3 28 28 H 1.08998 * 109.47443 * 120.00626 * 2 1 3 29 29 H 1.09000 * 109.47079 * 240.00817 * 2 1 3 30 30 H 0.96996 * 120.00270 * 180.02562 * 8 7 5 31 31 H 1.00898 * 110.99834 * 209.85729 * 13 3 2 32 32 H 1.08994 * 109.46864 * 295.62361 * 14 13 3 33 33 H 1.08994 * 109.47486 * 55.63048 * 14 13 3 34 34 H 1.07995 * 120.59755 * 359.97438 * 16 15 14 35 35 H 1.07999 * 121.68641 * 0.05065 * 20 19 17 36 36 H 1.08003 * 125.15459 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0032 5 6 1.5413 2.1518 -1.2325 6 1 0.9201 3.0300 -1.1360 7 6 1.8779 1.6795 -2.4834 8 7 2.6346 0.6103 -2.6009 9 14 1.2591 2.5583 -4.0112 10 1 1.7535 3.9585 -4.0114 11 1 1.7581 1.8574 -5.2216 12 1 -0.2259 2.5576 -4.0153 13 7 1.5468 2.1362 1.1974 14 6 2.4389 1.9090 2.3422 15 6 1.9615 2.7196 3.5196 16 6 1.4985 2.0894 4.6550 17 6 1.0680 2.8703 5.7301 18 8 0.6581 2.3387 6.7499 19 7 1.1049 4.2297 5.6324 20 6 0.7197 5.1422 6.5813 21 6 0.8447 6.4059 6.2644 22 16 1.5008 6.5473 4.6404 23 6 1.5650 4.7905 4.4894 24 7 1.9785 4.0429 3.4695 25 1 -0.3634 0.5807 -0.8479 26 1 -0.3633 0.4439 0.9269 27 1 -0.3633 -1.0246 -0.0791 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 2.8717 0.2782 -3.4809 31 1 1.4289 3.1226 1.0211 32 1 2.4326 0.8508 2.6033 33 1 3.4522 2.2123 2.0791 34 1 1.4722 1.0114 4.7135 35 1 0.3332 4.8334 7.5413 36 1 0.5848 7.2362 6.9044 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571340781.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:40 Heat of formation + Delta-G solvation = 41.782932 kcal Electronic energy + Delta-G solvation = -20718.257760 eV Core-core repulsion = 17522.981598 eV Total energy + Delta-G solvation = -3195.276162 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.42655 -37.89325 -37.86192 -35.98998 -32.95999 -31.58708 -31.12936 -30.23883 -27.24752 -25.95241 -24.97314 -23.17515 -22.63361 -21.77280 -19.16118 -19.05655 -18.35726 -17.37086 -16.77480 -16.44957 -15.46041 -15.10230 -14.86032 -14.44229 -14.08065 -13.76656 -13.66854 -13.58675 -13.48113 -12.70937 -12.32442 -12.16144 -11.86170 -11.78045 -11.43002 -10.92055 -10.82475 -10.47582 -10.41340 -10.36883 -10.16070 -10.11481 -9.68661 -9.48147 -9.36879 -8.79857 -8.46546 -7.84090 -7.32631 -6.02168 -4.07612 0.02010 0.35055 1.11500 1.13420 1.76569 2.06867 3.31755 3.36397 3.38943 3.45296 3.99029 4.10051 4.40577 4.64476 4.74935 4.89108 5.27645 5.29505 5.41202 5.48643 5.68105 5.94366 6.06448 6.19419 6.30319 6.54340 6.68322 6.85686 7.23152 7.25735 7.47175 7.51845 7.58378 7.73705 7.77569 7.82739 8.24183 8.33573 8.61045 8.99827 9.56951 11.03753 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.021634 B = 0.003894 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.953193 B = 7188.480269 C = 8113.575327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C 0.216 3.784 4 H 0.004 0.996 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.676 5.676 14 C 0.105 3.895 15 C 0.232 3.768 16 C -0.300 4.300 17 C 0.528 3.472 18 O -0.535 6.535 19 N -0.461 5.461 20 C 0.064 3.936 21 C -0.239 4.239 22 S 0.207 5.793 23 C 0.298 3.702 24 N -0.499 5.499 25 H 0.056 0.944 26 H 0.041 0.959 27 H 0.014 0.986 28 H 0.011 0.989 29 H 0.088 0.912 30 H 0.261 0.739 31 H 0.340 0.660 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.165 0.835 35 H 0.190 0.810 36 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.290 11.445 16.404 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.142 4.142 3 C 0.109 3.891 4 H 0.022 0.978 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.309 5.309 14 C -0.025 4.025 15 C 0.104 3.896 16 C -0.329 4.329 17 C 0.332 3.668 18 O -0.414 6.414 19 N -0.173 5.173 20 C -0.063 4.063 21 C -0.376 4.376 22 S 0.457 5.543 23 C -0.069 4.069 24 N -0.226 5.226 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.033 0.967 28 H 0.029 0.971 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.158 0.842 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.182 0.818 35 H 0.207 0.793 36 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -1.265 11.751 15.514 19.503 hybrid contribution -0.232 -0.490 0.487 0.728 sum -1.497 11.261 16.000 19.623 Atomic orbital electron populations 1.21454 0.97492 0.97490 1.01334 1.21457 0.95076 0.98112 0.99600 1.19203 0.93184 0.91481 0.85239 0.97796 1.21113 1.31805 1.12004 0.90206 0.92295 1.24865 0.94999 0.94983 0.98878 1.69867 1.36529 1.22684 1.23660 0.86622 0.79249 0.79661 0.82251 1.20340 1.21356 1.20220 1.60893 1.47378 1.16952 1.05659 1.20997 0.95528 0.97539 0.88452 1.21723 0.85833 0.87628 0.94441 1.22594 1.13985 1.02389 0.93976 1.17377 0.80895 0.78287 0.90237 1.90959 1.49105 1.69449 1.31866 1.45325 1.48459 1.10170 1.13357 1.20824 1.00569 0.88160 0.96763 1.25148 1.10909 0.99745 1.01771 1.85407 1.67405 0.91124 1.10377 1.26195 0.94644 1.00925 0.85111 1.68010 1.24127 1.07502 1.22987 0.92482 0.94025 0.96715 0.97056 0.89369 0.92865 0.84194 0.89195 0.93076 0.81785 0.79293 0.78286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.52 37.16 0.35 -2.34 16 2 C -0.10 -2.46 5.59 -26.73 -0.15 -2.61 16 3 C 0.22 5.23 2.30 -68.86 -0.16 5.07 16 4 H 0.00 0.12 7.72 -51.93 -0.40 -0.28 16 5 C -0.51 -13.52 7.26 -34.44 -0.25 -13.77 16 6 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -24.70 11.32 55.43 0.63 -24.07 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.68 -14.02 5.64 -109.22 -0.62 -14.63 16 14 C 0.11 1.84 5.94 -4.97 -0.03 1.81 16 15 C 0.23 3.76 6.32 -82.47 -0.52 3.24 16 16 C -0.30 -4.72 9.67 -39.18 -0.38 -5.10 16 17 C 0.53 8.37 7.51 -15.01 -0.11 8.26 16 18 O -0.53 -9.61 17.46 4.83 0.08 -9.53 16 19 N -0.46 -6.00 2.82 -66.36 -0.19 -6.19 16 20 C 0.06 0.57 10.46 -16.85 -0.18 0.40 16 21 C -0.24 -1.46 11.11 29.05 0.32 -1.14 16 22 S 0.21 1.76 23.37 -107.50 -2.51 -0.75 16 23 C 0.30 3.91 8.32 -87.91 -0.73 3.18 16 24 N -0.50 -7.83 10.20 -9.01 -0.09 -7.93 16 25 H 0.06 1.37 7.07 -51.93 -0.37 1.01 16 26 H 0.04 0.89 7.74 -51.93 -0.40 0.49 16 27 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.01 0.24 7.60 -51.93 -0.39 -0.16 16 29 H 0.09 2.33 6.07 -51.93 -0.31 2.01 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.34 7.18 8.00 -39.29 -0.31 6.87 16 32 H 0.09 1.50 7.38 -51.93 -0.38 1.12 16 33 H 0.05 0.91 7.95 -51.93 -0.41 0.49 16 34 H 0.16 2.40 7.98 -52.49 -0.42 1.98 16 35 H 0.19 1.36 8.00 -52.49 -0.42 0.94 16 36 H 0.20 0.42 8.06 -52.48 -0.42 0.00 16 LS Contribution 318.61 15.07 4.80 4.80 Total: -1.00 -30.98 318.61 -9.05 -40.03 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -4.21 Total: 3.73 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.93 Total: -1.36 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.27 Total: -52.83 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.51 Total: -0.75 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.98 -9.05 -40.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571340781.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.810 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds