Wall clock time and date at job start Tue Mar 31 2020 07:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46960 * 2 1 4 4 H 1.09001 * 109.46957 * 179.82275 * 3 2 1 5 5 C 1.50694 * 109.47820 * 299.82551 * 3 2 1 6 6 H 1.08001 * 120.00084 * 119.99787 * 5 3 2 7 7 C 1.37877 * 119.99879 * 300.00599 * 5 3 2 8 8 N 1.31519 * 120.00278 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99965 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47544 * 59.99535 * 9 7 5 11 11 H 1.48503 * 109.46957 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47171 * 299.99097 * 9 7 5 13 13 N 1.46906 * 109.46735 * 59.82781 * 3 2 1 14 14 C 1.46903 * 110.99715 * 85.90742 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.63196 * 14 13 3 16 16 C 1.37867 * 120.26077 * 114.72320 * 15 14 13 17 17 C 1.39671 * 118.80956 * 179.76604 * 16 15 14 18 18 O 1.22096 * 120.19667 * 180.29017 * 17 16 15 19 19 N 1.36343 * 119.60127 * 0.47383 * 17 16 15 20 20 C 1.37161 * 127.31194 * 179.75957 * 19 17 16 21 21 C 1.30885 * 116.61713 * 180.02562 * 20 19 17 22 22 S 1.75725 * 109.69995 * 359.97438 * 21 20 19 23 23 C 1.35374 * 118.85949 * 359.79083 * 19 17 16 24 24 N 1.32431 * 120.25749 * 294.99589 * 15 14 13 25 25 H 1.09002 * 109.47314 * 55.59117 * 1 2 3 26 26 H 1.09001 * 109.47122 * 295.58873 * 1 2 3 27 27 H 1.09000 * 109.46766 * 175.58629 * 1 2 3 28 28 H 1.08998 * 109.47443 * 120.00626 * 2 1 3 29 29 H 1.09000 * 109.47079 * 240.00817 * 2 1 3 30 30 H 0.96996 * 120.00270 * 180.02562 * 8 7 5 31 31 H 1.00898 * 110.99834 * 209.85729 * 13 3 2 32 32 H 1.08994 * 109.46864 * 295.62361 * 14 13 3 33 33 H 1.08994 * 109.47486 * 55.63048 * 14 13 3 34 34 H 1.07995 * 120.59755 * 359.97438 * 16 15 14 35 35 H 1.07999 * 121.68641 * 0.05065 * 20 19 17 36 36 H 1.08003 * 125.15459 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0032 5 6 1.5413 2.1518 -1.2325 6 1 0.9201 3.0300 -1.1360 7 6 1.8779 1.6795 -2.4834 8 7 2.6346 0.6103 -2.6009 9 14 1.2591 2.5583 -4.0112 10 1 1.7535 3.9585 -4.0114 11 1 1.7581 1.8574 -5.2216 12 1 -0.2259 2.5576 -4.0153 13 7 1.5468 2.1362 1.1974 14 6 2.4389 1.9090 2.3422 15 6 1.9615 2.7196 3.5196 16 6 1.4985 2.0894 4.6550 17 6 1.0680 2.8703 5.7301 18 8 0.6581 2.3387 6.7499 19 7 1.1049 4.2297 5.6324 20 6 0.7197 5.1422 6.5813 21 6 0.8447 6.4059 6.2644 22 16 1.5008 6.5473 4.6404 23 6 1.5650 4.7905 4.4894 24 7 1.9785 4.0429 3.4695 25 1 -0.3634 0.5807 -0.8479 26 1 -0.3633 0.4439 0.9269 27 1 -0.3633 -1.0246 -0.0791 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 2.8717 0.2782 -3.4809 31 1 1.4289 3.1226 1.0211 32 1 2.4326 0.8508 2.6033 33 1 3.4522 2.2123 2.0791 34 1 1.4722 1.0114 4.7135 35 1 0.3332 4.8334 7.5413 36 1 0.5848 7.2362 6.9044 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571340781.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:39 Heat of formation + Delta-G solvation = 21.834761 kcal Electronic energy + Delta-G solvation = -20719.122778 eV Core-core repulsion = 17522.981598 eV Total energy + Delta-G solvation = -3196.141180 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.44735 -39.13997 -38.96691 -37.62367 -34.61763 -33.00461 -32.33500 -31.71170 -28.87959 -27.19306 -26.44173 -25.02412 -23.70626 -22.83716 -20.95920 -20.07029 -19.45537 -18.60713 -18.05714 -17.81898 -16.87275 -16.64271 -16.10923 -15.62635 -15.40237 -15.36354 -15.01404 -14.73725 -14.61554 -14.29313 -13.98839 -13.57586 -13.39146 -13.07819 -12.76964 -12.63802 -12.55321 -12.38770 -11.97438 -11.71388 -11.50222 -11.32922 -11.28547 -11.13914 -10.78250 -10.55161 -10.44897 -9.05785 -8.79325 -8.06742 -6.18509 -1.00681 -0.52176 0.22727 0.43847 0.76883 1.14534 1.45646 1.46753 1.53868 2.29578 2.46242 2.88619 3.13237 3.22352 3.56960 3.86623 4.10851 4.22013 4.28428 4.39742 4.60037 4.63029 4.70136 4.80159 4.82796 4.97646 5.10285 5.22295 5.32241 5.40606 5.57238 5.73536 5.83930 5.89691 6.30587 6.39895 6.44705 6.47657 6.74984 7.00957 7.49588 8.98131 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.021634 B = 0.003894 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.953193 B = 7188.480269 C = 8113.575327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.100 4.100 3 C 0.222 3.778 4 H -0.026 1.026 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.953 3.047 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.672 5.672 14 C 0.110 3.890 15 C 0.236 3.764 16 C -0.319 4.319 17 C 0.522 3.478 18 O -0.568 6.568 19 N -0.460 5.460 20 C 0.024 3.976 21 C -0.191 4.191 22 S 0.265 5.735 23 C 0.277 3.723 24 N -0.532 5.532 25 H 0.035 0.965 26 H 0.048 0.952 27 H 0.032 0.968 28 H 0.025 0.975 29 H 0.061 0.939 30 H 0.261 0.739 31 H 0.337 0.663 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.165 0.835 35 H 0.205 0.795 36 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.208 14.231 17.551 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.139 4.139 3 C 0.114 3.886 4 H -0.009 1.009 5 C -0.562 4.562 6 H 0.073 0.927 7 C -0.179 4.179 8 N -0.554 5.554 9 Si 0.779 3.221 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.304 5.304 14 C -0.020 4.020 15 C 0.106 3.894 16 C -0.349 4.349 17 C 0.328 3.672 18 O -0.451 6.451 19 N -0.169 5.169 20 C -0.101 4.101 21 C -0.328 4.328 22 S 0.515 5.485 23 C -0.088 4.088 24 N -0.261 5.261 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.155 0.845 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.183 0.817 35 H 0.222 0.778 36 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -2.195 14.612 16.697 22.296 hybrid contribution 0.073 -1.088 0.227 1.114 sum -2.122 13.524 16.924 21.768 Atomic orbital electron populations 1.21313 0.96247 0.98328 1.00664 1.21344 0.96070 0.97569 0.98929 1.18993 0.91275 0.92124 0.86195 1.00864 1.21371 1.31582 1.11995 0.91291 0.92651 1.25574 0.95193 0.95621 1.01556 1.69999 1.37493 1.23827 1.24105 0.85687 0.78724 0.78747 0.78922 1.19717 1.21170 1.19864 1.60768 1.48018 1.16418 1.05148 1.20920 0.94784 0.98379 0.87951 1.21367 0.86126 0.88216 0.93739 1.22564 1.15331 1.02682 0.94330 1.17296 0.80812 0.79413 0.89719 1.90923 1.50923 1.70429 1.32778 1.45270 1.47580 1.09920 1.14155 1.21251 1.03264 0.88467 0.97150 1.25849 1.06491 0.99905 1.00505 1.85414 1.65182 0.86639 1.11236 1.26998 0.94040 1.03147 0.84615 1.67945 1.26196 1.07268 1.24642 0.94598 0.93303 0.94860 0.95599 0.92087 0.92979 0.84543 0.88618 0.93550 0.81732 0.77800 0.73165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.81 9.52 71.98 0.69 -4.13 16 2 C -0.10 -4.83 5.59 30.59 0.17 -4.66 16 3 C 0.22 11.03 2.30 44.17 0.10 11.13 16 4 H -0.03 -1.44 7.72 -2.39 -0.02 -1.45 16 5 C -0.52 -28.05 7.26 25.60 0.19 -27.86 16 6 H 0.06 2.94 7.60 -2.91 -0.02 2.92 16 7 C 0.02 1.08 5.30 84.65 0.45 1.53 16 8 N -0.91 -51.81 11.32 21.45 0.24 -51.56 16 9 Si 0.95 43.05 29.54 68.60 2.03 45.07 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 13 N -0.67 -28.40 5.64 -499.46 -2.81 -31.22 16 14 C 0.11 3.95 5.94 85.56 0.51 4.46 16 15 C 0.24 7.83 6.32 42.38 0.27 8.10 16 16 C -0.32 -10.35 9.67 22.53 0.22 -10.14 16 17 C 0.52 16.78 7.51 84.34 0.63 17.41 16 18 O -0.57 -20.81 17.46 -5.63 -0.10 -20.91 16 19 N -0.46 -11.46 2.82 -481.02 -1.36 -12.82 16 20 C 0.02 0.36 10.46 83.94 0.88 1.23 16 21 C -0.19 -1.40 11.11 67.90 0.75 -0.65 16 22 S 0.26 3.55 23.37 -56.49 -1.32 2.23 16 23 C 0.28 6.90 8.32 179.40 1.49 8.40 16 24 N -0.53 -16.68 10.20 -182.42 -1.86 -18.54 16 25 H 0.03 1.72 7.07 -2.39 -0.02 1.70 16 26 H 0.05 2.07 7.74 -2.39 -0.02 2.05 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.03 1.13 7.60 -2.39 -0.02 1.11 16 29 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 30 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 31 H 0.34 14.50 8.00 -89.70 -0.72 13.78 16 32 H 0.10 3.29 7.38 -2.39 -0.02 3.27 16 33 H 0.05 1.71 7.95 -2.39 -0.02 1.69 16 34 H 0.17 5.06 7.98 -2.91 -0.02 5.04 16 35 H 0.21 2.43 8.00 -2.91 -0.02 2.40 16 36 H 0.25 -0.76 8.06 -2.91 -0.02 -0.78 16 Total: -1.00 -69.47 318.61 1.56 -67.91 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.40 Total: 15.02 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 6.35 Total: 4.83 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -5.79 Total: -114.14 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.10 Total: -20.91 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -1.32 Total: 2.23 kcal Total: -69.47 1.56 -67.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571340781.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.741 kcal (2) G-P(sol) polarization free energy of solvation -69.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds