Wall clock time and date at job start Tue Mar 31 2020 07:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47179 * 2 1 4 4 H 1.09005 * 109.47181 * 305.69106 * 3 2 1 5 5 C 1.50709 * 109.46986 * 185.69571 * 3 2 1 6 6 H 1.08000 * 119.99832 * 275.00759 * 5 3 2 7 7 C 1.37874 * 120.00093 * 95.00221 * 5 3 2 8 8 N 1.31509 * 119.99912 * 184.83209 * 7 5 3 9 9 Si 1.86804 * 119.99992 * 4.83072 * 7 5 3 10 10 H 1.48497 * 109.47380 * 84.86044 * 9 7 5 11 11 H 1.48497 * 109.47146 * 204.86258 * 9 7 5 12 12 H 1.48501 * 109.47233 * 324.85868 * 9 7 5 13 13 N 1.46497 * 109.47539 * 65.69420 * 3 2 1 14 14 C 1.34771 * 120.00126 * 275.00032 * 13 3 2 15 15 O 1.21588 * 120.00069 * 359.72699 * 14 13 3 16 16 N 1.34773 * 120.00401 * 179.72193 * 14 13 3 17 17 C 1.38809 * 120.00398 * 180.02562 * 16 14 13 18 18 S 1.70440 * 124.64509 * 0.02562 * 17 16 14 19 19 C 1.75470 * 92.52247 * 179.97438 * 18 17 16 20 20 C 1.32588 * 110.78510 * 359.97438 * 19 18 17 21 21 C 1.50708 * 123.42197 * 180.02562 * 20 19 18 22 22 C 1.36991 * 124.64923 * 179.72363 * 17 16 14 23 23 C 1.43198 * 123.58303 * 0.02562 * 22 17 16 24 24 N 7.77919 * 77.10385 * 51.88505 * 2 1 3 25 25 H 1.08998 * 109.47489 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47007 * 299.99993 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99762 * 1 2 3 28 28 H 1.09002 * 109.46794 * 239.99497 * 2 1 3 29 29 H 1.09000 * 109.47050 * 120.00238 * 2 1 3 30 30 H 0.97007 * 120.00172 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99821 * 94.72148 * 13 3 2 32 32 H 0.97003 * 119.99605 * 359.97438 * 16 14 13 33 33 H 1.08006 * 124.60343 * 180.02562 * 19 18 17 34 34 H 1.08992 * 109.46861 * 89.97885 * 21 20 19 35 35 H 1.08997 * 109.46772 * 209.97921 * 21 20 19 36 36 H 1.08996 * 109.47135 * 329.97586 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8347 5 6 3.5405 1.4448 -0.1410 6 1 4.1651 1.3332 0.7329 7 6 4.1157 1.5892 -1.3857 8 7 5.4204 1.4962 -1.5218 9 14 3.0418 1.9170 -2.8786 10 1 2.7754 3.3739 -2.9865 11 1 3.7400 1.4495 -4.1029 12 1 1.7561 1.1881 -2.7332 13 7 1.6668 2.0925 1.2587 14 6 0.4510 2.6589 1.3901 15 8 -0.3344 2.6348 0.4622 16 7 0.1056 3.2520 2.5499 17 6 -1.1469 3.8349 2.6854 18 16 -2.3369 3.8688 1.4657 19 6 -3.4679 4.7405 2.4855 20 6 -2.9403 4.9762 3.6788 21 6 -3.6673 5.7067 4.7783 22 6 -1.5980 4.4567 3.8197 23 6 -0.8218 4.5818 5.0165 24 7 -0.2062 4.6805 5.9661 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.8251 1.5975 -2.3976 31 1 2.2933 2.1116 1.9990 32 1 0.7320 3.2708 3.2904 33 1 -4.4595 5.0430 2.1826 34 1 -4.2204 4.9908 5.3862 35 1 -2.9461 6.2334 5.4032 36 1 -4.3613 6.4243 4.3407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572199667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:46 Heat of formation + Delta-G solvation = 20.110002 kcal Electronic energy + Delta-G solvation = -20762.182541 eV Core-core repulsion = 17565.966570 eV Total energy + Delta-G solvation = -3196.215971 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.42159 -38.52787 -36.05428 -35.86843 -34.67598 -32.57583 -31.71042 -29.99727 -27.87654 -27.49234 -24.15806 -22.90355 -21.84784 -20.21853 -19.94715 -19.03345 -18.27633 -16.95133 -16.19563 -15.87535 -15.62753 -14.99515 -14.57614 -14.38912 -13.93160 -13.72994 -13.28367 -13.21149 -13.03635 -12.88933 -12.85962 -12.26007 -12.19933 -12.06939 -11.94267 -11.78557 -11.19331 -10.97819 -10.89492 -10.79045 -10.60060 -10.08210 -9.95485 -9.69111 -9.34823 -8.84590 -8.47476 -8.27056 -7.94754 -6.35324 -4.40832 0.80845 1.29035 1.90765 2.01383 2.67148 2.70887 3.18640 3.24653 3.27075 3.32251 3.53629 4.11919 4.21600 4.47359 4.75990 5.01635 5.05945 5.33658 5.44961 5.47553 5.66300 5.92876 5.96788 5.97485 6.09011 6.26003 6.27369 6.41196 6.63291 6.72940 6.78493 6.88329 7.17719 7.19483 7.35585 7.54213 7.99611 8.35538 8.61374 8.69669 9.24737 10.75874 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.023857 B = 0.004277 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.365600 B = 6545.454484 C = 7008.534824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.251 3.749 4 H 0.056 0.944 5 C -0.535 4.535 6 H 0.079 0.921 7 C 0.084 3.916 8 N -0.883 5.883 9 Si 0.873 3.127 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.257 1.257 13 N -0.700 5.700 14 C 0.684 3.316 15 O -0.560 6.560 16 N -0.651 5.651 17 C 0.106 3.894 18 S 0.331 5.669 19 C -0.305 4.305 20 C -0.039 4.039 21 C -0.096 4.096 22 C -0.152 4.152 23 C 0.284 3.716 24 N -0.439 5.439 25 H 0.032 0.968 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.270 0.730 31 H 0.395 0.605 32 H 0.413 0.587 33 H 0.167 0.833 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.877 4.748 6.757 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.166 4.166 3 C 0.149 3.851 4 H 0.074 0.926 5 C -0.573 4.573 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.519 5.519 9 Si 0.699 3.301 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.181 1.181 13 N -0.351 5.351 14 C 0.384 3.616 15 O -0.439 6.439 16 N -0.296 5.296 17 C -0.119 4.119 18 S 0.593 5.407 19 C -0.441 4.441 20 C -0.051 4.051 21 C -0.155 4.155 22 C -0.174 4.174 23 C -0.031 4.031 24 N -0.117 5.117 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.229 0.771 32 H 0.249 0.751 33 H 0.184 0.816 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.365 4.236 5.659 17.827 hybrid contribution 0.239 0.702 1.165 1.381 sum -16.126 4.938 6.824 18.194 Atomic orbital electron populations 1.21899 0.97258 0.99101 1.01969 1.22104 0.93806 0.99174 1.01537 1.19236 0.95658 0.88994 0.81192 0.92639 1.20969 0.88419 1.52272 0.95634 0.90254 1.24939 0.94919 0.93439 0.98869 1.69871 1.09821 1.47452 1.24724 0.86900 0.81270 0.79743 0.82144 1.19722 1.21060 1.18148 1.46099 1.12297 1.57255 1.19407 1.16321 0.84504 0.79176 0.81591 1.90810 1.50666 1.64399 1.38011 1.42357 1.13563 1.56740 1.16940 1.21936 0.92020 0.98018 0.99940 1.84574 0.98100 1.50336 1.07735 1.25823 1.06540 1.11999 0.99707 1.19199 0.90939 0.99116 0.95840 1.20504 0.99611 0.99390 0.95995 1.15748 0.95839 1.16444 0.89358 1.24928 0.92917 0.92958 0.92338 1.81259 1.09143 1.10568 1.10696 0.94893 0.93414 0.92819 0.91699 0.92912 0.92017 0.77141 0.75084 0.81585 0.90919 0.91825 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.53 37.16 0.32 -2.30 16 2 C -0.13 -2.53 5.59 -26.73 -0.15 -2.68 16 3 C 0.25 5.42 1.89 -69.08 -0.13 5.29 16 4 H 0.06 1.30 4.73 -51.93 -0.25 1.06 16 5 C -0.53 -13.49 9.05 -34.44 -0.31 -13.81 16 6 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 7 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 8 N -0.88 -25.00 13.96 55.43 0.77 -24.23 16 9 Si 0.87 20.32 26.99 -169.99 -4.59 15.73 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.26 -5.80 6.82 56.52 0.39 -5.41 16 13 N -0.70 -12.67 5.03 -59.81 -0.30 -12.97 16 14 C 0.68 11.64 7.12 -86.93 -0.62 11.03 16 15 O -0.56 -10.52 10.92 5.29 0.06 -10.46 16 16 N -0.65 -9.11 5.37 -16.00 -0.09 -9.19 16 17 C 0.11 1.41 6.98 -14.84 -0.10 1.30 16 18 S 0.33 4.05 19.96 -107.50 -2.15 1.90 16 19 C -0.31 -2.95 10.89 28.83 0.31 -2.64 16 20 C -0.04 -0.40 6.00 -104.01 -0.62 -1.03 16 21 C -0.10 -0.78 9.95 36.01 0.36 -0.42 16 22 C -0.15 -1.89 5.88 -105.91 -0.62 -2.51 16 23 C 0.28 3.83 14.23 -22.48 -0.32 3.51 16 24 N -0.44 -6.60 18.54 41.84 0.78 -5.82 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.85 5.64 -51.93 -0.29 0.56 16 27 H 0.05 1.02 7.89 -51.93 -0.41 0.61 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.27 7.18 8.31 -40.82 -0.34 6.85 16 31 H 0.39 6.34 8.61 -40.82 -0.35 5.99 16 32 H 0.41 5.04 8.16 -40.82 -0.33 4.71 16 33 H 0.17 1.17 8.06 -52.48 -0.42 0.74 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.55 7.69 -51.93 -0.40 0.15 16 36 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 LS Contribution 321.21 15.07 4.84 4.84 Total: -1.00 -28.93 321.21 -6.80 -35.74 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.14 Total: 6.58 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.99 Total: -2.12 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 1.16 Total: -52.21 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.06 Total: -10.46 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.59 Total: 15.73 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -2.15 Total: 1.90 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.93 -6.80 -35.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572199667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.846 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds