Wall clock time and date at job start Tue Mar 31 2020 07:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47179 * 2 1 4 4 H 1.09005 * 109.47181 * 305.69106 * 3 2 1 5 5 C 1.50709 * 109.46986 * 185.69571 * 3 2 1 6 6 H 1.08000 * 119.99832 * 275.00759 * 5 3 2 7 7 C 1.37874 * 120.00093 * 95.00221 * 5 3 2 8 8 N 1.31509 * 119.99912 * 184.83209 * 7 5 3 9 9 Si 1.86804 * 119.99992 * 4.83072 * 7 5 3 10 10 H 1.48497 * 109.47380 * 84.86044 * 9 7 5 11 11 H 1.48497 * 109.47146 * 204.86258 * 9 7 5 12 12 H 1.48501 * 109.47233 * 324.85868 * 9 7 5 13 13 N 1.46497 * 109.47539 * 65.69420 * 3 2 1 14 14 C 1.34771 * 120.00126 * 275.00032 * 13 3 2 15 15 O 1.21588 * 120.00069 * 359.72699 * 14 13 3 16 16 N 1.34773 * 120.00401 * 179.72193 * 14 13 3 17 17 C 1.38809 * 120.00398 * 180.02562 * 16 14 13 18 18 S 1.70440 * 124.64509 * 0.02562 * 17 16 14 19 19 C 1.75470 * 92.52247 * 179.97438 * 18 17 16 20 20 C 1.32588 * 110.78510 * 359.97438 * 19 18 17 21 21 C 1.50708 * 123.42197 * 180.02562 * 20 19 18 22 22 C 1.36991 * 124.64923 * 179.72363 * 17 16 14 23 23 C 1.43198 * 123.58303 * 0.02562 * 22 17 16 24 24 N 7.77919 * 77.10385 * 51.88505 * 2 1 3 25 25 H 1.08998 * 109.47489 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47007 * 299.99993 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99762 * 1 2 3 28 28 H 1.09002 * 109.46794 * 239.99497 * 2 1 3 29 29 H 1.09000 * 109.47050 * 120.00238 * 2 1 3 30 30 H 0.97007 * 120.00172 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99821 * 94.72148 * 13 3 2 32 32 H 0.97003 * 119.99605 * 359.97438 * 16 14 13 33 33 H 1.08006 * 124.60343 * 180.02562 * 19 18 17 34 34 H 1.08992 * 109.46861 * 89.97885 * 21 20 19 35 35 H 1.08997 * 109.46772 * 209.97921 * 21 20 19 36 36 H 1.08996 * 109.47135 * 329.97586 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8347 5 6 3.5405 1.4448 -0.1410 6 1 4.1651 1.3332 0.7329 7 6 4.1157 1.5892 -1.3857 8 7 5.4204 1.4962 -1.5218 9 14 3.0418 1.9170 -2.8786 10 1 2.7754 3.3739 -2.9865 11 1 3.7400 1.4495 -4.1029 12 1 1.7561 1.1881 -2.7332 13 7 1.6668 2.0925 1.2587 14 6 0.4510 2.6589 1.3901 15 8 -0.3344 2.6348 0.4622 16 7 0.1056 3.2520 2.5499 17 6 -1.1469 3.8349 2.6854 18 16 -2.3369 3.8688 1.4657 19 6 -3.4679 4.7405 2.4855 20 6 -2.9403 4.9762 3.6788 21 6 -3.6673 5.7067 4.7783 22 6 -1.5980 4.4567 3.8197 23 6 -0.8218 4.5818 5.0165 24 7 -0.2062 4.6805 5.9661 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.8251 1.5975 -2.3976 31 1 2.2933 2.1116 1.9990 32 1 0.7320 3.2708 3.2904 33 1 -4.4595 5.0430 2.1826 34 1 -4.2204 4.9908 5.3862 35 1 -2.9461 6.2334 5.4032 36 1 -4.3613 6.4243 4.3407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572199667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:45 Heat of formation + Delta-G solvation = 1.550453 kcal Electronic energy + Delta-G solvation = -20762.987343 eV Core-core repulsion = 17565.966570 eV Total energy + Delta-G solvation = -3197.020773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.72388 -39.56499 -37.48869 -37.00790 -35.91785 -34.46627 -33.18857 -30.99746 -29.39299 -28.50881 -25.37104 -24.49649 -23.10171 -21.57214 -21.18935 -20.34640 -19.43330 -18.64731 -17.47531 -17.21666 -16.89053 -16.38811 -15.95559 -15.50836 -15.29926 -14.76318 -14.70285 -14.42618 -14.27184 -14.05628 -13.81477 -13.77011 -13.73420 -13.23056 -13.08492 -12.90651 -12.63040 -12.57668 -12.42157 -12.13532 -11.84977 -11.69082 -11.52900 -11.22789 -10.86957 -10.84149 -9.93485 -9.24277 -8.98672 -8.39284 -6.47034 -0.21083 0.33715 1.04543 1.06033 1.32529 1.37845 1.47342 1.51264 1.66347 1.94285 2.28160 2.45863 2.92195 3.08786 3.27128 3.87669 4.24077 4.33152 4.44482 4.52831 4.59727 4.68697 4.81672 4.88392 4.90896 5.09432 5.15534 5.21005 5.26285 5.36607 5.43097 5.47738 5.55643 5.64172 5.68770 6.16026 6.46943 6.59171 6.86463 7.18187 7.32857 8.75513 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.023857 B = 0.004277 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.365600 B = 6545.454484 C = 7008.534824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 C 0.260 3.740 4 H 0.042 0.958 5 C -0.531 4.531 6 H 0.053 0.947 7 C 0.034 3.966 8 N -0.930 5.930 9 Si 0.927 3.073 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.245 1.245 13 N -0.705 5.705 14 C 0.690 3.310 15 O -0.577 6.577 16 N -0.644 5.644 17 C 0.082 3.918 18 S 0.311 5.689 19 C -0.277 4.277 20 C -0.048 4.048 21 C -0.095 4.095 22 C -0.146 4.146 23 C 0.297 3.703 24 N -0.468 5.468 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.271 0.729 31 H 0.403 0.597 32 H 0.420 0.580 33 H 0.201 0.799 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.934 5.342 7.064 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C 0.156 3.844 4 H 0.059 0.941 5 C -0.569 4.569 6 H 0.071 0.929 7 C -0.167 4.167 8 N -0.568 5.568 9 Si 0.751 3.249 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.169 1.169 13 N -0.356 5.356 14 C 0.390 3.610 15 O -0.457 6.457 16 N -0.289 5.289 17 C -0.142 4.142 18 S 0.574 5.426 19 C -0.413 4.413 20 C -0.060 4.060 21 C -0.154 4.154 22 C -0.169 4.169 23 C -0.017 4.017 24 N -0.146 5.146 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.238 0.762 32 H 0.257 0.743 33 H 0.218 0.782 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.461 4.846 6.006 20.935 hybrid contribution 1.091 0.577 1.207 1.726 sum -18.370 5.423 7.213 20.466 Atomic orbital electron populations 1.21765 0.95374 1.00448 1.01474 1.22016 0.95385 0.97681 1.01366 1.18918 0.93087 0.90190 0.82157 0.94057 1.21190 0.90325 1.50804 0.94570 0.92913 1.25642 0.95791 0.93681 1.01616 1.69986 1.11523 1.49937 1.25396 0.86042 0.80207 0.79464 0.79180 1.19851 1.20714 1.16856 1.45646 1.13367 1.57960 1.18677 1.16160 0.83745 0.78962 0.82166 1.90810 1.51032 1.64906 1.38904 1.42024 1.14249 1.56516 1.16155 1.22089 0.91919 0.99371 1.00788 1.84631 0.98680 1.50833 1.08464 1.26060 1.06969 1.09928 0.98316 1.19472 0.90106 0.99458 0.96942 1.20576 0.99653 0.99821 0.95302 1.16005 0.96585 1.15835 0.88428 1.25078 0.92320 0.92156 0.92176 1.81273 1.10037 1.11572 1.11705 0.92598 0.93333 0.93827 0.92699 0.92322 0.92000 0.76155 0.74266 0.78248 0.89871 0.92711 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 8.53 71.98 0.61 -3.94 16 2 C -0.13 -4.86 5.59 30.59 0.17 -4.69 16 3 C 0.26 11.15 1.89 44.25 0.08 11.24 16 4 H 0.04 1.91 4.73 -2.38 -0.01 1.90 16 5 C -0.53 -27.23 9.05 25.60 0.23 -27.00 16 6 H 0.05 2.93 8.06 -2.91 -0.02 2.90 16 7 C 0.03 1.81 5.47 84.65 0.46 2.27 16 8 N -0.93 -54.04 13.96 21.45 0.30 -53.74 16 9 Si 0.93 42.08 26.99 68.60 1.85 43.93 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.25 -10.53 6.82 99.48 0.68 -9.86 16 13 N -0.70 -25.23 5.03 -461.41 -2.32 -27.55 16 14 C 0.69 22.85 7.12 179.06 1.27 24.12 16 15 O -0.58 -20.98 10.92 -3.99 -0.04 -21.02 16 16 N -0.64 -17.38 5.37 -322.79 -1.73 -19.11 16 17 C 0.08 2.05 6.98 83.29 0.58 2.63 16 18 S 0.31 6.96 19.96 -56.49 -1.13 5.83 16 19 C -0.28 -4.35 10.89 66.66 0.73 -3.63 16 20 C -0.05 -0.86 6.00 -19.39 -0.12 -0.98 16 21 C -0.09 -1.21 9.95 71.24 0.71 -0.50 16 22 C -0.15 -3.35 5.88 -20.70 -0.12 -3.47 16 23 C 0.30 7.63 14.23 88.33 1.26 8.89 16 24 N -0.47 -13.66 18.54 19.00 0.35 -13.31 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.05 1.64 5.64 -2.39 -0.01 1.63 16 27 H 0.04 1.57 7.89 -2.39 -0.02 1.55 16 28 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.27 14.80 8.31 -92.70 -0.77 14.03 16 31 H 0.40 12.95 8.61 -92.71 -0.80 12.15 16 32 H 0.42 9.95 8.16 -92.71 -0.76 9.19 16 33 H 0.20 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 0.82 7.69 -2.39 -0.02 0.80 16 36 H 0.10 0.80 8.13 -2.39 -0.02 0.78 16 Total: -1.00 -62.46 321.21 2.71 -59.75 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -0.44 Total: 20.27 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 5.87 Total: 4.94 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -3.40 Total: -113.71 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.04 Total: -21.02 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.85 Total: 43.93 kcal Atomic # 16 Polarization: 6.96 SS G_CDS: -1.13 Total: 5.83 kcal Total: -62.46 2.71 -59.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572199667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.303 kcal (2) G-P(sol) polarization free energy of solvation -62.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds