Wall clock time and date at job start Tue Mar 31 2020 07:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21580 * 120.00313 * 0.02562 * 14 13 3 16 16 N 1.34780 * 120.00039 * 180.02562 * 14 13 3 17 17 C 1.38808 * 120.00150 * 180.02562 * 16 14 13 18 18 S 1.70442 * 124.64674 * 0.02664 * 17 16 14 19 19 C 1.75468 * 92.52473 * 179.97438 * 18 17 16 20 20 C 1.32596 * 110.78419 * 0.02562 * 19 18 17 21 21 C 1.50703 * 123.42157 * 180.02562 * 20 19 18 22 22 C 1.36992 * 124.64949 * 179.72324 * 17 16 14 23 23 C 1.43204 * 123.57991 * 0.02604 * 22 17 16 24 24 N 7.78938 * 76.76205 * 308.80898 * 2 1 3 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 32 32 H 0.97004 * 119.99552 * 0.02562 * 16 14 13 33 33 H 1.07999 * 124.60963 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.47258 * 89.97237 * 21 20 19 35 35 H 1.08999 * 109.46656 * 209.97074 * 21 20 19 36 36 H 1.08992 * 109.47209 * 329.96806 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6326 -0.4318 16 7 0.0785 3.2666 -2.5187 17 6 -1.1750 3.8509 -2.6371 18 16 -2.3524 3.8768 -1.4049 19 6 -3.4930 4.7573 -2.4063 20 6 -2.9774 5.0015 -3.6033 21 6 -3.7145 5.7421 -4.6892 22 6 -1.6332 4.4911 -3.7582 23 6 -0.8644 4.6355 -4.9578 24 7 -0.2538 4.7521 -5.9085 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0605 2.9503 31 1 2.2720 2.1232 -1.9977 32 1 0.6978 3.2916 -3.2649 33 1 -4.4807 5.0593 -2.0907 34 1 -3.5099 6.8094 -4.6045 35 1 -3.3813 5.3844 -5.6634 36 1 -4.7854 5.5681 -4.5852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572199668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:49 Heat of formation + Delta-G solvation = 20.669454 kcal Electronic energy + Delta-G solvation = -20673.714593 eV Core-core repulsion = 17477.522882 eV Total energy + Delta-G solvation = -3196.191711 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.31448 -38.45726 -35.97451 -35.76085 -34.59072 -32.63341 -31.18678 -29.90291 -27.74500 -27.04712 -24.13591 -23.05385 -21.70544 -20.15802 -19.77747 -18.88223 -18.25333 -16.67401 -15.88011 -15.72641 -15.55230 -15.00035 -14.48290 -14.36637 -13.85014 -13.66043 -13.23133 -13.17552 -12.85668 -12.81055 -12.75346 -12.22253 -12.04051 -11.76143 -11.66112 -11.35969 -11.18221 -10.94479 -10.89082 -10.60118 -10.41550 -10.28848 -9.74061 -9.57319 -9.20416 -8.64312 -8.31899 -8.20312 -7.85524 -6.23510 -4.33742 0.86589 1.35072 1.95028 2.07620 2.73945 2.76177 3.19598 3.25535 3.26888 3.33078 3.59526 4.15786 4.23185 4.64765 4.81452 5.06972 5.08675 5.37581 5.48229 5.52109 5.69949 6.02320 6.28623 6.30595 6.33074 6.34018 6.49171 6.65034 6.93833 7.10989 7.12256 7.24388 7.51039 7.56943 7.64505 7.75928 8.03554 8.42692 8.60518 8.84732 9.33487 10.81705 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026171 B = 0.003869 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.622747 B = 7236.142080 C = 7884.321438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.285 3.715 4 H 0.055 0.945 5 C -0.540 4.540 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.880 5.880 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.704 5.704 14 C 0.685 3.315 15 O -0.554 6.554 16 N -0.652 5.652 17 C 0.107 3.893 18 S 0.335 5.665 19 C -0.307 4.307 20 C -0.039 4.039 21 C -0.096 4.096 22 C -0.155 4.155 23 C 0.285 3.715 24 N -0.442 5.442 25 H 0.036 0.964 26 H 0.052 0.948 27 H 0.024 0.976 28 H 0.102 0.898 29 H 0.032 0.968 30 H 0.267 0.733 31 H 0.390 0.610 32 H 0.411 0.589 33 H 0.166 0.834 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.113 6.483 -7.831 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.169 4.169 3 C 0.184 3.816 4 H 0.073 0.927 5 C -0.578 4.578 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.354 5.354 14 C 0.384 3.616 15 O -0.432 6.432 16 N -0.297 5.297 17 C -0.118 4.118 18 S 0.597 5.403 19 C -0.442 4.442 20 C -0.052 4.052 21 C -0.155 4.155 22 C -0.177 4.177 23 C -0.030 4.030 24 N -0.120 5.120 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.121 0.879 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.223 0.777 32 H 0.247 0.753 33 H 0.184 0.816 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.749 5.867 -6.666 14.728 hybrid contribution 1.574 0.465 -1.894 2.506 sum -10.176 6.332 -8.560 14.728 Atomic orbital electron populations 1.21831 0.98162 0.98302 1.01160 1.21980 0.92786 0.99580 1.02565 1.18872 0.94384 0.89049 0.79307 0.92742 1.21143 0.90371 1.39701 1.06592 0.92050 1.24855 0.98765 0.94577 0.95244 1.69868 1.35369 1.37169 1.09275 0.86479 0.84537 0.78398 0.77552 1.20127 1.21022 1.20127 1.45897 1.12447 1.57272 1.19815 1.16217 0.84513 0.79225 0.81601 1.90823 1.51109 1.64133 1.37135 1.42377 1.13632 1.56528 1.17193 1.21945 0.91987 0.97739 1.00130 1.84638 0.98407 1.49718 1.07552 1.25843 1.06776 1.11923 0.99677 1.19188 0.90958 0.99215 0.95798 1.20500 0.99512 0.99502 0.95954 1.15743 0.95890 1.16340 0.89716 1.24943 0.92898 0.92837 0.92303 1.81250 1.09157 1.10769 1.10790 0.94537 0.92861 0.95647 0.87949 0.94919 0.92316 0.77679 0.75269 0.81614 0.90949 0.91883 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.51 37.16 0.32 -2.49 16 2 C -0.13 -2.94 5.45 -26.74 -0.15 -3.09 16 3 C 0.29 6.60 2.24 -69.09 -0.15 6.45 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.43 8.73 -34.44 -0.30 -13.73 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.40 11.29 55.43 0.63 -22.78 16 9 Si 0.90 19.84 29.54 -169.99 -5.02 14.82 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 13 N -0.70 -13.25 5.03 -59.82 -0.30 -13.55 16 14 C 0.68 12.17 7.09 -86.92 -0.62 11.55 16 15 O -0.55 -10.97 10.90 5.30 0.06 -10.91 16 16 N -0.65 -9.43 5.37 -16.00 -0.09 -9.52 16 17 C 0.11 1.47 6.98 -14.84 -0.10 1.37 16 18 S 0.34 4.27 19.96 -107.50 -2.15 2.13 16 19 C -0.31 -3.09 10.89 28.83 0.31 -2.77 16 20 C -0.04 -0.42 6.00 -104.01 -0.62 -1.05 16 21 C -0.10 -0.80 9.95 36.01 0.36 -0.44 16 22 C -0.16 -1.98 5.88 -105.91 -0.62 -2.60 16 23 C 0.29 3.91 14.23 -22.47 -0.32 3.59 16 24 N -0.44 -6.71 18.54 41.84 0.78 -5.93 16 25 H 0.04 0.72 5.65 -51.93 -0.29 0.43 16 26 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.39 6.40 8.55 -40.82 -0.35 6.05 16 32 H 0.41 5.16 8.16 -40.82 -0.33 4.83 16 33 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.56 7.69 -51.93 -0.40 0.16 16 36 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 LS Contribution 321.28 15.07 4.84 4.84 Total: -1.00 -27.77 321.28 -7.39 -35.15 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -4.14 Total: 7.28 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -1.99 Total: -1.53 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 1.01 Total: -51.78 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.06 Total: -10.91 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -2.15 Total: 2.13 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.77 -7.39 -35.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572199668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.820 kcal (2) G-P(sol) polarization free energy of solvation -27.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds