Wall clock time and date at job start Tue Mar 31 2020 07:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21580 * 120.00313 * 0.02562 * 14 13 3 16 16 N 1.34780 * 120.00039 * 180.02562 * 14 13 3 17 17 C 1.38808 * 120.00150 * 180.02562 * 16 14 13 18 18 S 1.70442 * 124.64674 * 0.02664 * 17 16 14 19 19 C 1.75468 * 92.52473 * 179.97438 * 18 17 16 20 20 C 1.32596 * 110.78419 * 0.02562 * 19 18 17 21 21 C 1.50703 * 123.42157 * 180.02562 * 20 19 18 22 22 C 1.36992 * 124.64949 * 179.72324 * 17 16 14 23 23 C 1.43204 * 123.57991 * 0.02604 * 22 17 16 24 24 N 7.78938 * 76.76205 * 308.80898 * 2 1 3 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 32 32 H 0.97004 * 119.99552 * 0.02562 * 16 14 13 33 33 H 1.07999 * 124.60963 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.47258 * 89.97237 * 21 20 19 35 35 H 1.08999 * 109.46656 * 209.97074 * 21 20 19 36 36 H 1.08992 * 109.47209 * 329.96806 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6326 -0.4318 16 7 0.0785 3.2666 -2.5187 17 6 -1.1750 3.8509 -2.6371 18 16 -2.3524 3.8768 -1.4049 19 6 -3.4930 4.7573 -2.4063 20 6 -2.9774 5.0015 -3.6033 21 6 -3.7145 5.7421 -4.6892 22 6 -1.6332 4.4911 -3.7582 23 6 -0.8644 4.6355 -4.9578 24 7 -0.2538 4.7521 -5.9085 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0605 2.9503 31 1 2.2720 2.1232 -1.9977 32 1 0.6978 3.2916 -3.2649 33 1 -4.4807 5.0593 -2.0907 34 1 -3.5099 6.8094 -4.6045 35 1 -3.3813 5.3844 -5.6634 36 1 -4.7854 5.5681 -4.5852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572199668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:49 Heat of formation + Delta-G solvation = 3.925403 kcal Electronic energy + Delta-G solvation = -20674.440670 eV Core-core repulsion = 17477.522882 eV Total energy + Delta-G solvation = -3196.917788 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.67231 -39.53886 -37.42526 -36.99608 -35.89859 -34.40125 -32.83293 -30.96943 -28.95282 -28.46646 -25.48163 -24.62248 -23.05151 -21.56351 -21.12697 -20.22837 -19.43741 -18.22586 -17.25235 -17.20512 -16.89652 -16.44102 -15.89014 -15.49179 -15.25314 -14.71713 -14.55877 -14.28500 -14.25595 -14.04337 -13.80282 -13.59326 -13.18129 -13.14592 -13.06384 -12.93026 -12.66202 -12.61708 -12.27931 -12.10025 -12.00589 -11.64187 -11.48972 -11.08577 -10.83323 -10.53921 -9.85264 -9.24093 -8.97131 -8.17023 -6.33522 -0.19626 0.35031 1.05925 1.08004 1.45297 1.46344 1.52154 1.56752 1.67219 1.98871 2.40980 2.46862 3.08151 3.13075 3.28406 3.88899 4.25214 4.53561 4.59329 4.60858 4.69394 4.76478 4.89044 4.92783 5.05133 5.11465 5.25517 5.42594 5.43315 5.46115 5.49051 5.56805 5.59885 5.83312 6.00608 6.16278 6.47273 6.71613 6.94320 7.29533 7.44964 8.87789 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026171 B = 0.003869 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.622747 B = 7236.142080 C = 7884.321438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.296 3.704 4 H 0.013 0.987 5 C -0.552 4.552 6 H 0.069 0.931 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.965 3.035 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.706 5.706 14 C 0.688 3.312 15 O -0.577 6.577 16 N -0.643 5.643 17 C 0.083 3.917 18 S 0.306 5.694 19 C -0.278 4.278 20 C -0.048 4.048 21 C -0.094 4.094 22 C -0.146 4.146 23 C 0.298 3.702 24 N -0.467 5.467 25 H 0.042 0.958 26 H 0.035 0.965 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.266 0.734 31 H 0.403 0.597 32 H 0.419 0.581 33 H 0.200 0.800 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.065 7.311 -9.157 17.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.163 4.163 3 C 0.193 3.807 4 H 0.030 0.970 5 C -0.591 4.591 6 H 0.087 0.913 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.791 3.209 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.193 1.193 13 N -0.357 5.357 14 C 0.388 3.612 15 O -0.456 6.456 16 N -0.289 5.289 17 C -0.141 4.141 18 S 0.569 5.431 19 C -0.413 4.413 20 C -0.060 4.060 21 C -0.153 4.153 22 C -0.169 4.169 23 C -0.016 4.016 24 N -0.145 5.145 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.237 0.763 32 H 0.257 0.743 33 H 0.217 0.783 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.723 6.722 -8.042 16.484 hybrid contribution 1.738 0.292 -1.527 2.332 sum -10.985 7.013 -9.569 16.168 Atomic orbital electron populations 1.21663 0.96539 0.99250 1.00544 1.21825 0.94142 0.98944 1.01353 1.18396 0.93468 0.89044 0.79754 0.96953 1.21505 0.91431 1.39334 1.06782 0.91299 1.25645 1.02850 0.94351 0.95045 1.70008 1.36957 1.37997 1.09733 0.85500 0.79598 0.78341 0.77504 1.19852 1.21118 1.19298 1.45505 1.13432 1.57800 1.18979 1.16156 0.83825 0.79048 0.82175 1.90823 1.51682 1.64804 1.38297 1.42014 1.14313 1.56267 1.16321 1.22078 0.91871 0.99176 1.00926 1.84756 0.99342 1.50469 1.08570 1.26065 1.07104 1.09822 0.98327 1.19481 0.90118 0.99498 0.96863 1.20574 1.00613 0.99627 0.94476 1.15992 0.96602 1.15528 0.88758 1.25047 0.92339 0.92127 0.92122 1.81264 1.09945 1.11626 1.11672 0.93923 0.94607 0.93815 0.90694 0.94396 0.92470 0.76265 0.74278 0.78265 0.89944 0.92590 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 8.51 71.98 0.61 -4.43 16 2 C -0.12 -5.67 5.45 30.59 0.17 -5.51 16 3 C 0.30 14.05 2.24 44.24 0.10 14.15 16 4 H 0.01 0.70 7.58 -2.39 -0.02 0.68 16 5 C -0.55 -27.71 8.73 25.60 0.22 -27.48 16 6 H 0.07 3.27 7.74 -2.91 -0.02 3.24 16 7 C 0.02 1.14 5.29 84.65 0.45 1.58 16 8 N -0.91 -49.47 11.29 21.45 0.24 -49.23 16 9 Si 0.97 40.71 29.54 68.60 2.03 42.74 16 10 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 13 N -0.71 -26.71 5.03 -461.43 -2.32 -29.03 16 14 C 0.69 24.53 7.09 179.05 1.27 25.80 16 15 O -0.58 -23.18 10.90 -3.97 -0.04 -23.22 16 16 N -0.64 -18.27 5.37 -322.78 -1.73 -20.00 16 17 C 0.08 2.20 6.98 83.29 0.58 2.78 16 18 S 0.31 7.47 19.96 -56.49 -1.13 6.34 16 19 C -0.28 -4.73 10.89 66.66 0.73 -4.01 16 20 C -0.05 -0.90 6.00 -19.39 -0.12 -1.02 16 21 C -0.09 -1.26 9.95 71.24 0.71 -0.55 16 22 C -0.15 -3.48 5.88 -20.70 -0.12 -3.60 16 23 C 0.30 7.77 14.23 88.33 1.26 9.03 16 24 N -0.47 -13.66 18.54 19.00 0.35 -13.31 16 25 H 0.04 1.68 5.65 -2.39 -0.01 1.66 16 26 H 0.03 1.57 7.84 -2.39 -0.02 1.55 16 27 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.07 3.89 5.95 -2.39 -0.01 3.88 16 29 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 31 H 0.40 13.07 8.55 -92.71 -0.79 12.27 16 32 H 0.42 10.26 8.16 -92.71 -0.76 9.50 16 33 H 0.20 2.05 8.06 -2.91 -0.02 2.02 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 0.85 7.69 -2.39 -0.02 0.83 16 36 H 0.10 0.85 8.13 -2.39 -0.02 0.83 16 Total: -1.00 -60.22 321.28 2.85 -57.38 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -0.41 Total: 21.60 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 5.85 Total: 6.73 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -3.46 Total: -111.57 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.04 Total: -23.22 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Atomic # 16 Polarization: 7.47 SS G_CDS: -1.13 Total: 6.34 kcal Total: -60.22 2.85 -57.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572199668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.305 kcal (2) G-P(sol) polarization free energy of solvation -60.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds