Wall clock time and date at job start Tue Mar 31 2020 07:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46979 * 2 1 4 4 H 1.09002 * 109.47374 * 185.55855 * 3 2 1 5 5 C 1.50706 * 109.46998 * 305.55698 * 3 2 1 6 6 H 1.08003 * 119.99602 * 116.65201 * 5 3 2 7 7 C 1.37871 * 120.00017 * 296.64990 * 5 3 2 8 8 N 1.31519 * 120.00309 * 352.46492 * 7 5 3 9 9 Si 1.86799 * 120.00105 * 172.46635 * 7 5 3 10 10 H 1.48502 * 109.47021 * 269.99674 * 9 7 5 11 11 H 1.48498 * 109.47330 * 29.99595 * 9 7 5 12 12 H 1.48498 * 109.47275 * 150.00029 * 9 7 5 13 13 N 1.46897 * 109.47473 * 65.55770 * 3 2 1 14 14 C 1.46902 * 111.00190 * 87.03765 * 13 3 2 15 15 C 1.50694 * 109.47459 * 184.04711 * 14 13 3 16 16 O 1.21285 * 119.99867 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00358 * 180.02562 * 15 14 13 18 18 C 1.38795 * 119.99948 * 179.97438 * 17 15 14 19 19 S 1.70442 * 124.65286 * 0.02562 * 18 17 15 20 20 C 1.75462 * 92.52337 * 179.97438 * 19 18 17 21 21 C 1.32621 * 110.77958 * 0.02562 * 20 19 18 22 22 C 1.36990 * 124.64386 * 179.72083 * 18 17 15 23 23 C 1.43201 * 123.57584 * 0.02562 * 22 18 17 24 24 N 8.51953 * 118.02801 * 76.81212 * 2 1 3 25 25 H 1.08999 * 109.47029 * 183.32568 * 1 2 3 26 26 H 1.09000 * 109.47134 * 303.33133 * 1 2 3 27 27 H 1.09005 * 109.46508 * 63.33117 * 1 2 3 28 28 H 1.08996 * 109.47425 * 239.99400 * 2 1 3 29 29 H 1.09006 * 109.46704 * 119.99249 * 2 1 3 30 30 H 0.96999 * 119.99326 * 355.71050 * 8 7 5 31 31 H 1.00893 * 111.00170 * 323.07967 * 13 3 2 32 32 H 1.09003 * 109.46831 * 304.04814 * 14 13 3 33 33 H 1.09004 * 109.46992 * 64.04239 * 14 13 3 34 34 H 0.97008 * 119.99441 * 359.97438 * 17 15 14 35 35 H 1.08003 * 124.60660 * 179.97438 * 20 19 18 36 36 H 1.07999 * 123.42274 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1255 1.4442 -0.0995 5 6 1.4284 2.1915 -1.1559 6 1 0.7766 3.0324 -0.9702 7 6 1.7010 1.8033 -2.4505 8 7 2.6068 0.8784 -2.6828 9 14 0.7839 2.5909 -3.8746 10 1 -0.4461 1.8106 -4.1633 11 1 0.4138 3.9834 -3.5154 12 1 1.6550 2.6047 -5.0772 13 7 1.6629 2.0952 1.2608 14 6 2.6719 1.8538 2.3009 15 6 2.2047 2.4524 3.6026 16 8 1.1366 3.0243 3.6583 17 7 2.9742 2.3532 4.7047 18 6 2.5441 2.9050 5.9034 19 16 1.0682 3.7307 6.1158 20 6 1.3897 4.0276 7.8150 21 6 2.5609 3.5157 8.1687 22 6 3.2449 2.8554 7.0794 23 6 4.5215 2.2208 7.2144 24 7 5.5334 1.7157 7.3220 25 1 -0.3633 -1.0259 0.0596 26 1 -0.3633 0.5647 0.8586 27 1 -0.3632 0.4613 -0.9184 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.1269 0.5140 -1.9496 31 1 0.7499 1.7929 1.5656 32 1 2.8157 0.7805 2.4254 33 1 3.6147 2.3150 2.0066 34 1 3.8287 1.8961 4.6600 35 1 0.7247 4.5562 8.4819 36 1 2.9607 3.5809 9.1699 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573383887.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:11 Heat of formation + Delta-G solvation = 24.807191 kcal Electronic energy + Delta-G solvation = -20265.858503 eV Core-core repulsion = 17069.846217 eV Total energy + Delta-G solvation = -3196.012286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56663 -38.39510 -36.77316 -36.09031 -34.90131 -32.92291 -30.94072 -29.48484 -27.27847 -25.37233 -24.23387 -23.61247 -21.80400 -20.92864 -19.71430 -19.14737 -18.05365 -16.82891 -16.15917 -16.06122 -15.63938 -14.96846 -14.58109 -14.35598 -14.16728 -13.77348 -13.55846 -13.43516 -13.32440 -12.91057 -12.82315 -12.42891 -12.22661 -12.18056 -11.84502 -11.26076 -11.17787 -11.16982 -10.79774 -10.39349 -10.19141 -10.11766 -9.96274 -9.95519 -8.74566 -8.66555 -8.40155 -8.33403 -7.55141 -6.36171 -4.05572 0.47434 1.01439 1.73608 1.75320 2.32877 2.48985 2.54303 3.28300 3.43833 3.47073 3.63167 3.88326 4.48266 4.56255 4.69020 4.92822 4.96889 5.32419 5.40933 5.43186 5.49729 5.62874 5.87971 5.93803 6.01045 6.05117 6.22574 6.58058 6.66268 6.82222 6.89763 7.14522 7.23390 7.32705 7.62858 7.72228 8.12977 8.25457 8.58922 8.85241 9.61466 10.99636 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026784 B = 0.003285 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.147945 B = 8521.302439 C = 8990.474680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.153 4.153 3 C 0.205 3.795 4 H 0.026 0.974 5 C -0.570 4.570 6 H 0.059 0.941 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 1.067 2.933 10 H -0.288 1.288 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.659 5.659 14 C 0.046 3.954 15 C 0.508 3.492 16 O -0.479 6.479 17 N -0.639 5.639 18 C 0.072 3.928 19 S 0.326 5.674 20 C -0.291 4.291 21 C -0.071 4.071 22 C -0.139 4.139 23 C 0.278 3.722 24 N -0.431 5.431 25 H 0.027 0.973 26 H 0.037 0.963 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.019 0.981 30 H 0.268 0.732 31 H 0.341 0.659 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.419 0.581 35 H 0.171 0.829 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.311 3.486 19.109 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.193 4.193 3 C 0.097 3.903 4 H 0.044 0.956 5 C -0.609 4.609 6 H 0.077 0.923 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.896 3.104 10 H -0.215 1.215 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.293 5.293 14 C -0.087 4.087 15 C 0.296 3.704 16 O -0.352 6.352 17 N -0.283 5.283 18 C -0.151 4.151 19 S 0.587 5.413 20 C -0.427 4.427 21 C -0.101 4.101 22 C -0.160 4.160 23 C -0.037 4.037 24 N -0.108 5.108 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.257 0.743 35 H 0.188 0.812 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.646 4.035 16.420 17.115 hybrid contribution 1.542 -1.427 2.945 3.617 sum -1.104 2.608 19.365 19.571 Atomic orbital electron populations 1.21556 0.96446 0.98434 1.02205 1.22240 0.96531 1.00890 0.99592 1.19406 0.95716 0.88734 0.86462 0.95582 1.21828 1.31561 1.16773 0.90751 0.92278 1.25721 0.96918 0.96021 0.99740 1.70800 1.21175 1.27265 1.35949 0.83560 0.75739 0.75630 0.75473 1.21512 1.21368 1.21271 1.60693 1.03312 1.63224 1.02060 1.21865 0.99697 0.98720 0.88437 1.21712 0.84129 0.79406 0.85153 1.90622 1.21552 1.40028 1.82947 1.43237 1.23862 1.54955 1.06256 1.22226 1.02446 1.01606 0.88807 1.84583 1.09401 1.47289 1.00043 1.25994 1.02598 1.10728 1.03330 1.20585 0.93879 0.97508 0.98108 1.15987 0.93005 1.13802 0.93194 1.24955 0.91959 0.92727 0.94081 1.81292 1.11529 1.11024 1.06976 0.95390 0.94437 0.91056 0.90994 0.96275 0.92110 0.83899 0.92443 0.87765 0.74325 0.81191 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.39 37.16 0.35 -2.23 16 2 C -0.15 -3.25 5.46 -26.73 -0.15 -3.40 16 3 C 0.20 4.67 1.97 -68.86 -0.14 4.54 16 4 H 0.03 0.64 7.23 -51.93 -0.38 0.27 16 5 C -0.57 -14.98 7.33 -34.44 -0.25 -15.23 16 6 H 0.06 1.62 7.83 -52.48 -0.41 1.21 16 7 C 0.02 0.53 5.25 -17.82 -0.09 0.43 16 8 N -0.91 -25.92 12.90 55.43 0.72 -25.21 16 9 Si 1.07 24.44 29.91 -169.99 -5.08 19.36 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 13 N -0.66 -13.01 5.94 -109.22 -0.65 -13.65 16 14 C 0.05 0.69 5.95 -4.98 -0.03 0.66 16 15 C 0.51 7.02 7.82 -10.99 -0.09 6.94 16 16 O -0.48 -7.72 13.54 5.55 0.08 -7.64 16 17 N -0.64 -7.12 5.37 -11.61 -0.06 -7.18 16 18 C 0.07 0.78 6.98 -14.85 -0.10 0.68 16 19 S 0.33 3.27 19.96 -107.50 -2.15 1.12 16 20 C -0.29 -2.17 11.10 28.83 0.32 -1.85 16 21 C -0.07 -0.57 10.35 -38.98 -0.40 -0.97 16 22 C -0.14 -1.41 5.88 -105.92 -0.62 -2.03 16 23 C 0.28 3.21 14.98 -22.47 -0.34 2.88 16 24 N -0.43 -5.79 18.54 41.84 0.78 -5.02 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.69 6.34 -51.93 -0.33 0.36 16 27 H 0.07 1.58 7.20 -51.93 -0.37 1.21 16 28 H 0.07 1.71 6.26 -51.93 -0.32 1.38 16 29 H 0.02 0.36 7.45 -51.93 -0.39 -0.03 16 30 H 0.27 7.48 6.02 -40.82 -0.25 7.23 16 31 H 0.34 6.66 6.06 -39.30 -0.24 6.43 16 32 H 0.06 0.79 7.43 -51.93 -0.39 0.40 16 33 H 0.10 1.50 8.13 -51.93 -0.42 1.07 16 34 H 0.42 3.91 8.15 -40.82 -0.33 3.57 16 35 H 0.17 0.83 8.06 -52.48 -0.42 0.40 16 36 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 322.27 15.07 4.86 4.86 Total: -1.00 -30.15 322.27 -6.95 -37.10 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -3.89 Total: 5.86 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -1.54 Total: -9.59 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.78 Total: -51.06 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.08 Total: -7.64 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.08 Total: 19.36 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -2.15 Total: 1.12 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.15 -6.95 -37.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573383887.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.909 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds