Wall clock time and date at job start Tue Mar 31 2020 07:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46979 * 2 1 4 4 H 1.09002 * 109.47374 * 185.55855 * 3 2 1 5 5 C 1.50706 * 109.46998 * 305.55698 * 3 2 1 6 6 H 1.08003 * 119.99602 * 116.65201 * 5 3 2 7 7 C 1.37871 * 120.00017 * 296.64990 * 5 3 2 8 8 N 1.31519 * 120.00309 * 352.46492 * 7 5 3 9 9 Si 1.86799 * 120.00105 * 172.46635 * 7 5 3 10 10 H 1.48502 * 109.47021 * 269.99674 * 9 7 5 11 11 H 1.48498 * 109.47330 * 29.99595 * 9 7 5 12 12 H 1.48498 * 109.47275 * 150.00029 * 9 7 5 13 13 N 1.46897 * 109.47473 * 65.55770 * 3 2 1 14 14 C 1.46902 * 111.00190 * 87.03765 * 13 3 2 15 15 C 1.50694 * 109.47459 * 184.04711 * 14 13 3 16 16 O 1.21285 * 119.99867 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00358 * 180.02562 * 15 14 13 18 18 C 1.38795 * 119.99948 * 179.97438 * 17 15 14 19 19 S 1.70442 * 124.65286 * 0.02562 * 18 17 15 20 20 C 1.75462 * 92.52337 * 179.97438 * 19 18 17 21 21 C 1.32621 * 110.77958 * 0.02562 * 20 19 18 22 22 C 1.36990 * 124.64386 * 179.72083 * 18 17 15 23 23 C 1.43201 * 123.57584 * 0.02562 * 22 18 17 24 24 N 8.51953 * 118.02801 * 76.81212 * 2 1 3 25 25 H 1.08999 * 109.47029 * 183.32568 * 1 2 3 26 26 H 1.09000 * 109.47134 * 303.33133 * 1 2 3 27 27 H 1.09005 * 109.46508 * 63.33117 * 1 2 3 28 28 H 1.08996 * 109.47425 * 239.99400 * 2 1 3 29 29 H 1.09006 * 109.46704 * 119.99249 * 2 1 3 30 30 H 0.96999 * 119.99326 * 355.71050 * 8 7 5 31 31 H 1.00893 * 111.00170 * 323.07967 * 13 3 2 32 32 H 1.09003 * 109.46831 * 304.04814 * 14 13 3 33 33 H 1.09004 * 109.46992 * 64.04239 * 14 13 3 34 34 H 0.97008 * 119.99441 * 359.97438 * 17 15 14 35 35 H 1.08003 * 124.60660 * 179.97438 * 20 19 18 36 36 H 1.07999 * 123.42274 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1255 1.4442 -0.0995 5 6 1.4284 2.1915 -1.1559 6 1 0.7766 3.0324 -0.9702 7 6 1.7010 1.8033 -2.4505 8 7 2.6068 0.8784 -2.6828 9 14 0.7839 2.5909 -3.8746 10 1 -0.4461 1.8106 -4.1633 11 1 0.4138 3.9834 -3.5154 12 1 1.6550 2.6047 -5.0772 13 7 1.6629 2.0952 1.2608 14 6 2.6719 1.8538 2.3009 15 6 2.2047 2.4524 3.6026 16 8 1.1366 3.0243 3.6583 17 7 2.9742 2.3532 4.7047 18 6 2.5441 2.9050 5.9034 19 16 1.0682 3.7307 6.1158 20 6 1.3897 4.0276 7.8150 21 6 2.5609 3.5157 8.1687 22 6 3.2449 2.8554 7.0794 23 6 4.5215 2.2208 7.2144 24 7 5.5334 1.7157 7.3220 25 1 -0.3633 -1.0259 0.0596 26 1 -0.3633 0.5647 0.8586 27 1 -0.3632 0.4613 -0.9184 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.1269 0.5140 -1.9496 31 1 0.7499 1.7929 1.5656 32 1 2.8157 0.7805 2.4254 33 1 3.6147 2.3150 2.0066 34 1 3.8287 1.8961 4.6600 35 1 0.7247 4.5562 8.4819 36 1 2.9607 3.5809 9.1699 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573383887.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:11 Heat of formation + Delta-G solvation = 4.852635 kcal Electronic energy + Delta-G solvation = -20266.723797 eV Core-core repulsion = 17069.846217 eV Total energy + Delta-G solvation = -3196.877580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60577 -39.30353 -38.39700 -37.04106 -35.81328 -34.68139 -32.62516 -30.42239 -28.70366 -26.80455 -25.60127 -25.17762 -22.73019 -21.80434 -21.44362 -20.04940 -19.30122 -18.40309 -17.32206 -17.11053 -16.74005 -16.03133 -15.81773 -15.50777 -15.44438 -15.20847 -15.00154 -14.88745 -14.30026 -14.08157 -13.84776 -13.75654 -13.64114 -13.39502 -13.07444 -12.94215 -12.60811 -12.18781 -12.02436 -12.01107 -11.93652 -11.91707 -11.67727 -10.97347 -10.63711 -10.36277 -9.43053 -9.23031 -9.11472 -8.48237 -6.17574 -0.36744 0.24785 1.02198 1.05460 1.28578 1.56844 1.58661 1.61657 1.64494 1.82457 2.41541 2.61642 3.01791 3.26940 3.44230 3.53249 3.95026 4.18823 4.25879 4.28142 4.35571 4.39457 4.54381 4.74735 4.90124 4.92286 5.06428 5.19421 5.20615 5.28280 5.41051 5.55482 5.76052 5.96061 6.21428 6.42217 6.52651 6.57836 6.68612 6.79800 7.55488 8.88320 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026784 B = 0.003285 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.147945 B = 8521.302439 C = 8990.474680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.145 4.145 3 C 0.209 3.791 4 H 0.006 0.994 5 C -0.575 4.575 6 H 0.042 0.958 7 C -0.024 4.024 8 N -0.939 5.939 9 Si 1.106 2.894 10 H -0.276 1.276 11 H -0.277 1.277 12 H -0.289 1.289 13 N -0.672 5.672 14 C 0.045 3.955 15 C 0.516 3.484 16 O -0.506 6.506 17 N -0.629 5.629 18 C 0.051 3.949 19 S 0.300 5.700 20 C -0.265 4.265 21 C -0.076 4.076 22 C -0.133 4.133 23 C 0.296 3.704 24 N -0.466 5.466 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.260 0.740 31 H 0.341 0.659 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.427 0.573 35 H 0.203 0.797 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 3.912 21.185 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.185 4.185 3 C 0.100 3.900 4 H 0.024 0.976 5 C -0.614 4.614 6 H 0.061 0.939 7 C -0.222 4.222 8 N -0.577 5.577 9 Si 0.930 3.070 10 H -0.202 1.202 11 H -0.203 1.203 12 H -0.215 1.215 13 N -0.305 5.305 14 C -0.088 4.088 15 C 0.304 3.696 16 O -0.380 6.380 17 N -0.273 5.273 18 C -0.171 4.171 19 S 0.562 5.438 20 C -0.400 4.400 21 C -0.105 4.105 22 C -0.155 4.155 23 C -0.019 4.019 24 N -0.144 5.144 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.162 0.838 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.266 0.734 35 H 0.220 0.780 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.409 4.462 18.543 19.375 hybrid contribution 1.792 -1.510 2.463 3.400 sum -1.618 2.951 21.006 21.274 Atomic orbital electron populations 1.21475 0.95344 0.99862 1.01343 1.22098 0.97443 0.99552 0.99412 1.19163 0.94101 0.89550 0.87160 0.97615 1.22076 1.30819 1.16311 0.92189 0.93932 1.26820 0.97078 0.96025 1.02279 1.70893 1.22419 1.28702 1.35714 0.83051 0.75226 0.75637 0.73114 1.20180 1.20265 1.21493 1.60465 1.04400 1.63289 1.02356 1.21863 0.98559 1.00200 0.88133 1.21260 0.83939 0.79130 0.85262 1.90627 1.22607 1.41226 1.83535 1.42921 1.23756 1.54747 1.05913 1.22345 1.03186 1.02858 0.88681 1.84715 1.09348 1.47252 1.02480 1.26251 1.02538 1.09530 1.01690 1.20865 0.93853 0.97150 0.98610 1.16218 0.92253 1.13364 0.93678 1.25114 0.91855 0.91957 0.92998 1.81313 1.12641 1.12229 1.08220 0.93078 0.93082 0.93794 0.93819 0.93643 0.92977 0.83831 0.90507 0.87239 0.73411 0.78021 0.80877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 9.39 71.98 0.68 -4.12 16 2 C -0.15 -6.13 5.46 30.59 0.17 -5.96 16 3 C 0.21 9.62 1.97 44.17 0.09 9.71 16 4 H 0.01 0.30 7.23 -2.39 -0.02 0.28 16 5 C -0.58 -30.65 7.33 25.60 0.19 -30.46 16 6 H 0.04 2.36 7.83 -2.91 -0.02 2.34 16 7 C -0.02 -1.28 5.25 84.65 0.44 -0.84 16 8 N -0.94 -54.16 12.90 21.45 0.28 -53.88 16 9 Si 1.11 49.51 29.91 68.60 2.05 51.57 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 13 N -0.67 -26.31 5.94 -499.46 -2.97 -29.28 16 14 C 0.04 1.31 5.95 85.55 0.51 1.82 16 15 C 0.52 13.81 7.82 87.65 0.69 14.50 16 16 O -0.51 -15.97 13.54 -3.05 -0.04 -16.02 16 17 N -0.63 -13.27 5.37 -309.04 -1.66 -14.93 16 18 C 0.05 1.03 6.98 83.30 0.58 1.61 16 19 S 0.30 5.51 19.96 -56.49 -1.13 4.38 16 20 C -0.26 -3.04 11.10 66.66 0.74 -2.30 16 21 C -0.08 -0.97 10.35 22.73 0.24 -0.73 16 22 C -0.13 -2.41 5.88 -20.71 -0.12 -2.54 16 23 C 0.30 6.37 14.98 88.33 1.32 7.69 16 24 N -0.47 -12.06 18.54 19.00 0.35 -11.71 16 25 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.05 1.83 6.34 -2.39 -0.02 1.81 16 27 H 0.04 1.94 7.20 -2.38 -0.02 1.92 16 28 H 0.04 2.09 6.26 -2.39 -0.01 2.08 16 29 H 0.04 1.65 7.45 -2.38 -0.02 1.63 16 30 H 0.26 14.92 6.02 -92.71 -0.56 14.37 16 31 H 0.34 13.14 6.06 -89.70 -0.54 12.60 16 32 H 0.08 1.98 7.43 -2.39 -0.02 1.96 16 33 H 0.11 3.09 8.13 -2.39 -0.02 3.07 16 34 H 0.43 7.46 8.15 -92.70 -0.76 6.71 16 35 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 36 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -65.54 322.27 2.46 -63.08 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.06 Total: 18.41 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 5.51 Total: -11.63 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -4.00 Total: -109.80 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.04 Total: -16.02 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 2.05 Total: 51.57 kcal Atomic # 16 Polarization: 5.51 SS G_CDS: -1.13 Total: 4.38 kcal Total: -65.54 2.46 -63.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573383887.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.934 kcal (2) G-P(sol) polarization free energy of solvation -65.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds