Wall clock time and date at job start Tue Mar 31 2020 07:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47221 * 2 1 4 4 H 1.09000 * 109.47114 * 177.94827 * 3 2 1 5 5 C 1.50691 * 109.46996 * 57.94448 * 3 2 1 6 6 H 1.08002 * 120.00469 * 239.99842 * 5 3 2 7 7 C 1.37886 * 120.00150 * 60.00271 * 5 3 2 8 8 N 1.31512 * 119.99627 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00092 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47439 * 60.00140 * 9 7 5 11 11 H 1.48502 * 109.47200 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47433 * 299.99898 * 9 7 5 13 13 N 1.46901 * 109.46851 * 297.94419 * 3 2 1 14 14 C 1.46896 * 111.00100 * 273.83354 * 13 3 2 15 15 C 1.50706 * 109.47011 * 174.45903 * 14 13 3 16 16 O 1.21287 * 120.00169 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99876 * 179.97438 * 15 14 13 18 18 C 1.38802 * 120.00173 * 179.97438 * 17 15 14 19 19 S 1.70443 * 124.64490 * 359.97438 * 18 17 15 20 20 C 1.75463 * 92.52457 * 180.02562 * 19 18 17 21 21 C 1.32624 * 110.77821 * 359.97438 * 20 19 18 22 22 C 1.36987 * 124.64947 * 179.97438 * 18 17 15 23 23 C 1.43191 * 123.57764 * 359.97438 * 22 18 17 24 24 N 8.49940 * 114.43630 * 283.22979 * 2 1 3 25 25 H 1.08994 * 109.47084 * 294.46960 * 1 2 3 26 26 H 1.09006 * 109.47100 * 54.46668 * 1 2 3 27 27 H 1.08996 * 109.47424 * 174.46308 * 1 2 3 28 28 H 1.08999 * 109.47475 * 239.99875 * 2 1 3 29 29 H 1.09003 * 109.47116 * 119.99641 * 2 1 3 30 30 H 0.97001 * 120.00095 * 180.02562 * 8 7 5 31 31 H 1.00902 * 110.99443 * 149.87707 * 13 3 2 32 32 H 1.09002 * 109.47431 * 54.46066 * 14 13 3 33 33 H 1.09007 * 109.47237 * 294.45615 * 14 13 3 34 34 H 0.97001 * 120.00060 * 0.02562 * 17 15 14 35 35 H 1.07997 * 124.61489 * 179.73888 * 20 19 18 36 36 H 1.07998 * 123.42559 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0368 5 6 1.4965 2.1674 1.2041 6 1 0.8795 3.0442 1.0737 7 6 1.7870 1.7115 2.4726 8 7 2.5380 0.6436 2.6314 9 14 1.1139 2.6105 3.9652 10 1 -0.3702 2.6107 3.9153 11 1 1.5679 1.9254 5.2020 12 1 1.6094 4.0104 3.9650 13 7 1.5913 2.1205 -1.2235 14 6 2.5278 1.8838 -2.3302 15 6 1.9684 2.4776 -3.5974 16 8 0.8954 3.0428 -3.5801 17 7 2.6610 2.3815 -4.7496 18 6 2.1456 2.9279 -5.9168 19 16 0.6528 3.7430 -6.0283 20 6 0.8544 4.0388 -7.7460 21 6 2.0021 3.5342 -8.1788 22 6 2.7669 2.8860 -7.1369 23 6 4.0387 2.2661 -7.3571 24 7 5.0460 1.7709 -7.5327 25 1 -0.3633 0.4256 0.9353 26 1 -0.3633 0.5973 -0.8363 27 1 -0.3634 -1.0228 -0.0992 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.7421 0.3226 3.5237 31 1 1.4632 3.1084 -1.0632 32 1 2.6695 0.8112 -2.4633 33 1 3.4857 2.3513 -2.1019 34 1 3.5193 1.9298 -4.7633 35 1 0.1394 4.5576 -8.3673 36 1 2.3315 3.6002 -9.2052 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573383888.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:15 Heat of formation + Delta-G solvation = 26.128328 kcal Electronic energy + Delta-G solvation = -20226.889097 eV Core-core repulsion = 17030.934101 eV Total energy + Delta-G solvation = -3195.954997 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.44958 -38.30974 -36.29615 -36.01292 -34.80875 -32.76536 -30.87236 -29.45249 -27.42084 -25.52847 -24.30074 -23.20506 -21.73792 -20.86918 -19.29026 -18.92164 -17.90338 -16.64485 -16.08716 -15.89283 -15.39674 -14.92166 -14.59224 -14.44882 -14.20545 -13.80684 -13.48767 -13.35523 -13.04034 -12.85669 -12.74580 -12.21497 -12.13964 -11.93700 -11.63014 -11.20676 -11.10186 -10.96012 -10.85780 -10.47700 -10.19442 -10.03047 -9.70751 -9.45324 -8.90884 -8.61501 -8.55358 -8.33770 -7.47216 -6.10243 -4.15871 0.53709 1.07040 1.78413 1.80790 2.43809 2.53995 2.62659 3.27373 3.32346 3.33262 3.35363 3.93681 4.34194 4.67243 4.74537 4.98050 5.11044 5.23436 5.46456 5.54662 5.61478 5.69702 5.93382 5.99951 6.42739 6.62899 6.76654 6.78083 7.11232 7.16467 7.37578 7.38266 7.63784 7.67406 7.73552 7.78144 8.11270 8.21336 8.48520 8.90880 9.49267 10.95889 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026914 B = 0.003274 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.086566 B = 8551.203000 C = 9001.089147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 C 0.218 3.782 4 H 0.004 0.996 5 C -0.516 4.516 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.668 5.668 14 C 0.049 3.951 15 C 0.507 3.493 16 O -0.477 6.477 17 N -0.640 5.640 18 C 0.074 3.926 19 S 0.326 5.674 20 C -0.293 4.293 21 C -0.071 4.071 22 C -0.141 4.141 23 C 0.279 3.721 24 N -0.432 5.432 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.013 0.987 28 H 0.009 0.991 29 H 0.088 0.912 30 H 0.262 0.738 31 H 0.342 0.658 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.419 0.581 35 H 0.170 0.830 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.841 5.090 -17.732 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.142 4.142 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.554 4.554 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.724 3.276 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.301 5.301 14 C -0.085 4.085 15 C 0.295 3.705 16 O -0.349 6.349 17 N -0.285 5.285 18 C -0.149 4.149 19 S 0.587 5.413 20 C -0.428 4.428 21 C -0.101 4.101 22 C -0.162 4.162 23 C -0.036 4.036 24 N -0.110 5.110 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.027 0.973 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.161 0.839 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.256 0.744 35 H 0.187 0.813 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.532 4.429 -16.863 17.618 hybrid contribution 1.800 0.450 -0.017 1.855 sum -0.732 4.879 -16.880 17.586 Atomic orbital electron populations 1.21447 0.97253 0.97275 1.01829 1.21459 0.95392 0.97926 0.99376 1.19193 0.93461 0.91742 0.84527 0.97870 1.21095 1.32039 1.12197 0.90093 0.92079 1.24869 0.94960 0.94987 0.98903 1.69864 1.37179 1.22981 1.22686 0.86593 0.79534 0.79702 0.81812 1.20089 1.21339 1.20321 1.60467 1.45641 1.17548 1.06407 1.21781 0.95708 1.01775 0.89192 1.21840 0.84800 0.79158 0.84671 1.90614 1.20417 1.40278 1.83582 1.43304 1.24130 1.55370 1.05655 1.22232 1.02124 1.01462 0.89043 1.84586 1.09241 1.47696 0.99818 1.25992 1.03092 1.10879 1.02863 1.20580 0.93273 0.97642 0.98578 1.15979 0.93447 1.14372 0.92444 1.24956 0.91957 0.92688 0.94042 1.81289 1.11649 1.11026 1.07003 0.92820 0.93254 0.96789 0.97261 0.89416 0.92783 0.83908 0.87897 0.92311 0.74385 0.81271 0.83540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.46 37.16 0.35 -2.28 16 2 C -0.10 -2.35 5.57 -26.73 -0.15 -2.50 16 3 C 0.22 5.01 2.30 -68.87 -0.16 4.85 16 4 H 0.00 0.09 7.84 -51.93 -0.41 -0.32 16 5 C -0.52 -13.16 7.33 -34.44 -0.25 -13.42 16 6 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 7 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -24.09 11.34 55.43 0.63 -23.46 16 9 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.67 -12.93 5.07 -109.22 -0.55 -13.48 16 14 C 0.05 0.73 5.94 -4.98 -0.03 0.70 16 15 C 0.51 7.01 7.84 -10.98 -0.09 6.92 16 16 O -0.48 -7.68 13.75 5.55 0.08 -7.61 16 17 N -0.64 -7.19 5.37 -11.61 -0.06 -7.26 16 18 C 0.07 0.82 6.98 -14.85 -0.10 0.71 16 19 S 0.33 3.31 19.96 -107.50 -2.15 1.16 16 20 C -0.29 -2.23 11.10 28.83 0.32 -1.91 16 21 C -0.07 -0.58 10.35 -38.98 -0.40 -0.99 16 22 C -0.14 -1.45 5.88 -105.92 -0.62 -2.08 16 23 C 0.28 3.26 14.98 -22.47 -0.34 2.93 16 24 N -0.43 -5.87 18.54 41.84 0.78 -5.10 16 25 H 0.05 1.26 7.37 -51.93 -0.38 0.88 16 26 H 0.05 1.06 7.50 -51.93 -0.39 0.67 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.01 0.18 7.42 -51.93 -0.39 -0.20 16 29 H 0.09 2.24 6.13 -51.93 -0.32 1.92 16 30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.34 6.74 8.10 -39.29 -0.32 6.42 16 32 H 0.10 1.48 7.38 -51.93 -0.38 1.10 16 33 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.42 3.96 8.15 -40.82 -0.33 3.63 16 35 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 326.12 15.07 4.91 4.91 Total: -1.00 -28.77 326.12 -7.09 -35.86 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.14 Total: 4.93 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.57 Total: -5.45 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.79 Total: -49.30 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.08 Total: -7.61 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.15 Total: 1.16 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.77 -7.09 -35.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573383888.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.992 kcal (2) G-P(sol) polarization free energy of solvation -28.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds