Wall clock time and date at job start Tue Mar 31 2020 07:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47221 * 2 1 4 4 H 1.09000 * 109.47114 * 177.94827 * 3 2 1 5 5 C 1.50691 * 109.46996 * 57.94448 * 3 2 1 6 6 H 1.08002 * 120.00469 * 239.99842 * 5 3 2 7 7 C 1.37886 * 120.00150 * 60.00271 * 5 3 2 8 8 N 1.31512 * 119.99627 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00092 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47439 * 60.00140 * 9 7 5 11 11 H 1.48502 * 109.47200 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47433 * 299.99898 * 9 7 5 13 13 N 1.46901 * 109.46851 * 297.94419 * 3 2 1 14 14 C 1.46896 * 111.00100 * 273.83354 * 13 3 2 15 15 C 1.50706 * 109.47011 * 174.45903 * 14 13 3 16 16 O 1.21287 * 120.00169 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99876 * 179.97438 * 15 14 13 18 18 C 1.38802 * 120.00173 * 179.97438 * 17 15 14 19 19 S 1.70443 * 124.64490 * 359.97438 * 18 17 15 20 20 C 1.75463 * 92.52457 * 180.02562 * 19 18 17 21 21 C 1.32624 * 110.77821 * 359.97438 * 20 19 18 22 22 C 1.36987 * 124.64947 * 179.97438 * 18 17 15 23 23 C 1.43191 * 123.57764 * 359.97438 * 22 18 17 24 24 N 8.49940 * 114.43630 * 283.22979 * 2 1 3 25 25 H 1.08994 * 109.47084 * 294.46960 * 1 2 3 26 26 H 1.09006 * 109.47100 * 54.46668 * 1 2 3 27 27 H 1.08996 * 109.47424 * 174.46308 * 1 2 3 28 28 H 1.08999 * 109.47475 * 239.99875 * 2 1 3 29 29 H 1.09003 * 109.47116 * 119.99641 * 2 1 3 30 30 H 0.97001 * 120.00095 * 180.02562 * 8 7 5 31 31 H 1.00902 * 110.99443 * 149.87707 * 13 3 2 32 32 H 1.09002 * 109.47431 * 54.46066 * 14 13 3 33 33 H 1.09007 * 109.47237 * 294.45615 * 14 13 3 34 34 H 0.97001 * 120.00060 * 0.02562 * 17 15 14 35 35 H 1.07997 * 124.61489 * 179.73888 * 20 19 18 36 36 H 1.07998 * 123.42559 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0368 5 6 1.4965 2.1674 1.2041 6 1 0.8795 3.0442 1.0737 7 6 1.7870 1.7115 2.4726 8 7 2.5380 0.6436 2.6314 9 14 1.1139 2.6105 3.9652 10 1 -0.3702 2.6107 3.9153 11 1 1.5679 1.9254 5.2020 12 1 1.6094 4.0104 3.9650 13 7 1.5913 2.1205 -1.2235 14 6 2.5278 1.8838 -2.3302 15 6 1.9684 2.4776 -3.5974 16 8 0.8954 3.0428 -3.5801 17 7 2.6610 2.3815 -4.7496 18 6 2.1456 2.9279 -5.9168 19 16 0.6528 3.7430 -6.0283 20 6 0.8544 4.0388 -7.7460 21 6 2.0021 3.5342 -8.1788 22 6 2.7669 2.8860 -7.1369 23 6 4.0387 2.2661 -7.3571 24 7 5.0460 1.7709 -7.5327 25 1 -0.3633 0.4256 0.9353 26 1 -0.3633 0.5973 -0.8363 27 1 -0.3634 -1.0228 -0.0992 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.7421 0.3226 3.5237 31 1 1.4632 3.1084 -1.0632 32 1 2.6695 0.8112 -2.4633 33 1 3.4857 2.3513 -2.1019 34 1 3.5193 1.9298 -4.7633 35 1 0.1394 4.5576 -8.3673 36 1 2.3315 3.6002 -9.2052 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573383888.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:14 Heat of formation + Delta-G solvation = 7.854066 kcal Electronic energy + Delta-G solvation = -20227.681529 eV Core-core repulsion = 17030.934101 eV Total energy + Delta-G solvation = -3196.747428 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.48869 -39.20810 -37.92652 -36.99416 -35.73376 -34.51756 -32.62529 -30.42521 -28.91278 -26.96372 -25.47318 -24.91183 -22.67221 -21.75779 -20.92204 -19.94612 -19.06560 -18.18812 -17.21529 -17.06511 -16.61951 -16.38168 -15.80090 -15.54468 -15.15290 -15.12875 -14.94253 -14.69810 -14.25620 -14.03002 -13.76338 -13.70615 -13.51136 -13.10337 -12.92919 -12.79916 -12.68444 -12.40317 -12.10167 -11.96117 -11.95343 -11.66086 -11.31055 -10.85990 -10.78204 -10.51312 -9.38964 -9.17239 -9.04954 -8.09219 -6.19994 -0.31390 0.29199 1.06806 1.09111 1.38416 1.44679 1.46254 1.52647 1.63140 1.67584 2.44611 2.45269 3.06123 3.20639 3.56178 3.68886 3.99510 4.31182 4.31967 4.41052 4.65650 4.79898 4.81848 4.94814 4.96264 5.22916 5.29515 5.31990 5.37408 5.56309 5.71850 5.80344 5.84340 5.93984 6.28646 6.42601 6.45916 6.67985 6.77650 6.99722 7.48380 8.95601 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026914 B = 0.003274 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.086566 B = 8551.203000 C = 9001.089147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C 0.224 3.776 4 H -0.020 1.020 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.950 3.050 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.670 5.670 14 C 0.047 3.953 15 C 0.516 3.484 16 O -0.503 6.503 17 N -0.631 5.631 18 C 0.054 3.946 19 S 0.301 5.699 20 C -0.267 4.267 21 C -0.076 4.076 22 C -0.136 4.136 23 C 0.296 3.704 24 N -0.467 5.467 25 H 0.029 0.971 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.027 0.973 29 H 0.059 0.941 30 H 0.261 0.739 31 H 0.339 0.661 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.426 0.574 35 H 0.202 0.798 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.512 5.852 -19.539 20.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.138 4.138 3 C 0.117 3.883 4 H -0.003 1.003 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.178 4.178 8 N -0.553 5.553 9 Si 0.777 3.223 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.302 5.302 14 C -0.085 4.085 15 C 0.304 3.696 16 O -0.377 6.377 17 N -0.275 5.275 18 C -0.168 4.168 19 S 0.562 5.438 20 C -0.402 4.402 21 C -0.105 4.105 22 C -0.158 4.158 23 C -0.019 4.019 24 N -0.145 5.145 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.157 0.843 32 H 0.129 0.871 33 H 0.091 0.909 34 H 0.265 0.735 35 H 0.219 0.781 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.193 5.198 -18.708 19.678 hybrid contribution 2.008 0.247 0.403 2.063 sum -1.184 5.445 -18.305 19.135 Atomic orbital electron populations 1.21309 0.96401 0.98352 1.00556 1.21347 0.96034 0.97618 0.98843 1.18951 0.91806 0.92095 0.85498 1.00264 1.21391 1.31602 1.12106 0.91284 0.92568 1.25535 0.95335 0.95667 1.01307 1.69984 1.38273 1.24105 1.22947 0.85729 0.78853 0.78809 0.78952 1.19942 1.21284 1.19784 1.60305 1.46941 1.17032 1.05957 1.21796 0.95499 1.02665 0.88564 1.21364 0.84467 0.78882 0.84864 1.90621 1.21416 1.41493 1.84173 1.42987 1.24135 1.55182 1.05246 1.22350 1.02826 1.02688 0.88934 1.84715 1.09097 1.47646 1.02299 1.26246 1.03196 1.09667 1.01111 1.20856 0.93085 0.97304 0.99236 1.16209 0.92803 1.13948 0.92847 1.25116 0.91847 0.91912 0.92980 1.81310 1.12749 1.12231 1.08254 0.95174 0.92983 0.94800 0.95407 0.92241 0.92995 0.84285 0.87092 0.90854 0.73490 0.78119 0.80979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.69 9.46 71.98 0.68 -4.01 16 2 C -0.10 -4.55 5.57 30.60 0.17 -4.38 16 3 C 0.22 10.41 2.30 44.17 0.10 10.52 16 4 H -0.02 -1.02 7.84 -2.39 -0.02 -1.04 16 5 C -0.53 -27.08 7.33 25.60 0.19 -26.89 16 6 H 0.06 2.89 7.60 -2.91 -0.02 2.87 16 7 C 0.02 1.12 5.30 84.66 0.45 1.57 16 8 N -0.91 -50.27 11.34 21.45 0.24 -50.03 16 9 Si 0.95 42.25 29.54 68.60 2.03 44.28 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 N -0.67 -25.84 5.07 -499.45 -2.53 -28.37 16 14 C 0.05 1.39 5.94 85.56 0.51 1.90 16 15 C 0.52 13.85 7.84 87.66 0.69 14.53 16 16 O -0.50 -15.91 13.75 -3.05 -0.04 -15.96 16 17 N -0.63 -13.48 5.37 -309.03 -1.66 -15.14 16 18 C 0.05 1.10 6.98 83.29 0.58 1.69 16 19 S 0.30 5.61 19.96 -56.49 -1.13 4.48 16 20 C -0.27 -3.17 11.10 66.66 0.74 -2.43 16 21 C -0.08 -1.00 10.35 22.73 0.24 -0.76 16 22 C -0.14 -2.52 5.88 -20.71 -0.12 -2.64 16 23 C 0.30 6.48 14.98 88.33 1.32 7.81 16 24 N -0.47 -12.24 18.54 19.00 0.35 -11.89 16 25 H 0.03 1.40 7.37 -2.39 -0.02 1.39 16 26 H 0.05 2.19 7.50 -2.38 -0.02 2.17 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.03 1.13 7.42 -2.39 -0.02 1.11 16 29 H 0.06 3.07 6.13 -2.39 -0.01 3.06 16 30 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 31 H 0.34 13.39 8.10 -89.69 -0.73 12.66 16 32 H 0.11 3.07 7.38 -2.39 -0.02 3.06 16 33 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.43 7.60 8.15 -92.71 -0.76 6.85 16 35 H 0.20 1.11 8.06 -2.91 -0.02 1.09 16 36 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -61.69 326.12 2.46 -59.23 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -0.34 Total: 16.49 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 5.54 Total: -3.10 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -3.59 Total: -105.43 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.04 Total: -15.96 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 16 Polarization: 5.61 SS G_CDS: -1.13 Total: 4.48 kcal Total: -61.69 2.46 -59.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573383888.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.085 kcal (2) G-P(sol) polarization free energy of solvation -61.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds