Wall clock time and date at job start Tue Mar 31 2020 06:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32593 * 123.42381 * 2 1 4 4 S 1.75467 * 110.78348 * 180.02562 * 3 2 1 5 5 C 1.70442 * 92.52588 * 0.02562 * 4 3 2 6 6 N 1.38806 * 124.64988 * 179.97438 * 5 4 3 7 7 C 1.34779 * 119.99858 * 0.02562 * 6 5 4 8 8 O 1.21592 * 119.99969 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00115 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00145 * 0.02562 * 9 7 6 11 11 C 1.46501 * 120.00239 * 180.02562 * 9 7 6 12 12 H 1.09000 * 109.47085 * 0.02562 * 11 9 7 13 13 C 1.52994 * 109.47411 * 240.00678 * 11 9 7 14 14 C 1.50698 * 109.47131 * 120.00212 * 11 9 7 15 15 H 1.08004 * 120.00251 * 5.36587 * 14 11 9 16 16 C 1.37881 * 120.00419 * 185.35906 * 14 11 9 17 17 N 1.31519 * 119.99492 * 5.15720 * 16 14 11 18 18 Si 1.86797 * 120.00069 * 185.15771 * 16 14 11 19 19 H 1.48501 * 109.47243 * 85.00288 * 18 16 14 20 20 H 1.48507 * 109.46766 * 204.99906 * 18 16 14 21 21 H 1.48491 * 109.47366 * 324.99740 * 18 16 14 22 22 C 1.36991 * 110.70306 * 0.24322 * 5 4 3 23 23 C 1.43205 * 123.58170 * 179.75822 * 22 5 4 24 24 N 3.57696 * 86.69041 * 180.28941 * 2 1 3 25 25 H 1.09002 * 109.46802 * 89.97706 * 1 2 3 26 26 H 1.08998 * 109.47383 * 209.97571 * 1 2 3 27 27 H 1.08999 * 109.47561 * 329.97910 * 1 2 3 28 28 H 1.07997 * 124.60608 * 359.97438 * 3 2 1 29 29 H 0.96998 * 120.00054 * 180.02562 * 6 5 4 30 30 H 1.08996 * 109.47258 * 269.99876 * 10 9 7 31 31 H 1.09006 * 109.46793 * 29.99574 * 10 9 7 32 32 H 1.08997 * 109.46997 * 149.99534 * 10 9 7 33 33 H 1.08998 * 109.47155 * 294.88974 * 13 11 9 34 34 H 1.08999 * 109.47731 * 54.89298 * 13 11 9 35 35 H 1.09004 * 109.47156 * 174.89633 * 13 11 9 36 36 H 0.97003 * 119.99628 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2374 1.1066 0.0000 4 16 3.9495 0.7227 -0.0007 5 6 3.6502 -0.9553 -0.0018 6 7 4.6357 -1.9327 -0.0032 7 6 5.9361 -1.5785 -0.0034 8 8 6.2460 -0.4027 -0.0018 9 7 6.8931 -2.5275 -0.0043 10 6 6.5198 -3.9442 -0.0056 11 6 8.3066 -2.1425 -0.0039 12 1 8.3871 -1.0555 -0.0023 13 6 8.9882 -2.7030 -1.2536 14 6 8.9779 -2.6972 1.2261 15 1 8.4321 -3.3497 1.8914 16 6 10.2891 -2.3717 1.5019 17 7 10.9221 -1.4986 0.7493 18 14 11.1660 -3.1710 2.9447 19 1 11.7291 -4.4777 2.5194 20 1 12.2648 -2.2858 3.4080 21 1 10.2017 -3.3847 4.0534 22 6 2.3036 -1.2070 -0.0070 23 6 1.7442 -2.5252 -0.0142 24 7 1.3005 -3.5710 -0.0180 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3634 0.8898 0.5141 28 1 1.8333 2.1082 -0.0004 29 1 4.3885 -2.8707 -0.0042 30 1 6.4272 -4.2965 1.0216 31 1 5.5666 -4.0682 -0.5196 32 1 7.2878 -4.5217 -0.5201 33 1 8.9878 -3.7921 -1.2102 34 1 8.4471 -2.3745 -2.1410 35 1 10.0156 -2.3417 -1.3001 36 1 11.8447 -1.2699 0.9431 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578878687.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:09 Heat of formation + Delta-G solvation = 18.011246 kcal Electronic energy + Delta-G solvation = -20756.284152 eV Core-core repulsion = 17559.977172 eV Total energy + Delta-G solvation = -3196.306980 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.77922 -39.54578 -37.54943 -37.02823 -36.14071 -34.73223 -31.84894 -30.56709 -28.56273 -27.85900 -27.26025 -25.27327 -23.50377 -21.75572 -20.77271 -19.91401 -18.97302 -18.36741 -17.34872 -17.23907 -16.93651 -16.43405 -15.89414 -15.47410 -15.08348 -14.73579 -14.55818 -14.38148 -14.27744 -14.04812 -13.82218 -13.60353 -13.31111 -13.23840 -13.05434 -12.90546 -12.84534 -12.66527 -12.58481 -12.27547 -12.22249 -11.91559 -11.66904 -11.22889 -10.85871 -10.52231 -9.64074 -9.27261 -8.96982 -8.16745 -6.30517 -0.22515 0.32789 1.03763 1.05615 1.42465 1.43278 1.48404 1.54025 1.65649 1.91659 2.40727 2.44984 2.79895 3.09001 3.14182 3.85924 4.14729 4.23086 4.50111 4.57341 4.66129 4.69974 4.84079 4.88862 4.89468 4.90588 4.98435 5.10466 5.20839 5.41726 5.44001 5.50942 5.62052 5.76916 5.97108 6.11720 6.45197 6.71930 6.77363 7.20655 7.41489 8.89647 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.024777 B = 0.004033 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.789422 B = 6941.600278 C = 7392.595045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.047 4.047 3 C -0.275 4.275 4 S 0.296 5.704 5 C 0.079 3.921 6 N -0.641 5.641 7 C 0.686 3.314 8 O -0.589 6.589 9 N -0.600 5.600 10 C 0.077 3.923 11 C 0.277 3.723 12 H 0.028 0.972 13 C -0.129 4.129 14 C -0.542 4.542 15 H 0.060 0.940 16 C 0.021 3.979 17 N -0.915 5.915 18 Si 0.960 3.040 19 H -0.269 1.269 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.143 4.143 23 C 0.297 3.703 24 N -0.462 5.462 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.202 0.798 29 H 0.419 0.581 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.029 0.971 35 H 0.056 0.944 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.861 2.447 -2.621 17.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.059 4.059 3 C -0.410 4.410 4 S 0.559 5.441 5 C -0.144 4.144 6 N -0.289 5.289 7 C 0.387 3.613 8 O -0.469 6.469 9 N -0.333 5.333 10 C -0.065 4.065 11 C 0.175 3.825 12 H 0.045 0.955 13 C -0.188 4.188 14 C -0.581 4.581 15 H 0.078 0.922 16 C -0.179 4.179 17 N -0.553 5.553 18 Si 0.786 3.214 19 H -0.194 1.194 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.166 4.166 23 C -0.017 4.017 24 N -0.140 5.140 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.115 0.885 28 H 0.219 0.781 29 H 0.259 0.741 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.675 2.541 -2.652 16.099 hybrid contribution -0.244 -1.524 0.720 1.703 sum -15.919 1.017 -1.933 16.068 Atomic orbital electron populations 1.20578 0.87472 1.03658 1.03517 1.19498 0.97516 0.88271 1.00591 1.26059 0.98404 1.03712 1.12815 1.84831 1.01698 0.89552 1.68010 1.22104 0.90157 0.98728 1.03409 1.42107 1.02943 1.09414 1.74418 1.16133 0.80523 0.85739 0.78902 1.90794 1.79914 1.17210 1.58978 1.47488 1.06518 1.05918 1.73356 1.21829 1.01396 0.80793 1.02490 1.18619 0.73658 0.95857 0.94365 0.95452 1.21854 1.00956 1.00067 0.95890 1.21526 0.97355 1.30325 1.08845 0.92174 1.25644 0.98130 0.95052 0.99077 1.70056 1.12050 1.32504 1.40687 0.85542 0.78016 0.78534 0.79349 1.19388 1.21192 1.19784 1.15996 0.88859 0.88054 1.23641 1.25007 0.92939 0.91831 0.91957 1.81257 1.08543 1.11647 1.12602 0.89767 0.92521 0.88505 0.78117 0.74070 0.92178 0.90398 0.89451 0.93036 0.95177 0.92484 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 9.95 71.24 0.71 -0.56 16 2 C -0.05 -0.92 6.00 -19.39 -0.12 -1.03 16 3 C -0.27 -4.95 10.89 66.66 0.73 -4.23 16 4 S 0.30 7.86 19.96 -56.49 -1.13 6.73 16 5 C 0.08 2.25 6.98 83.30 0.58 2.83 16 6 N -0.64 -19.77 5.24 -322.78 -1.69 -21.46 16 7 C 0.69 26.87 8.24 179.06 1.48 28.34 16 8 O -0.59 -26.59 13.09 -4.01 -0.05 -26.64 16 9 N -0.60 -23.94 2.75 -844.85 -2.33 -26.26 16 10 C 0.08 2.32 9.39 127.77 1.20 3.52 16 11 C 0.28 13.49 2.51 44.24 0.11 13.60 16 12 H 0.03 1.59 6.88 -2.39 -0.02 1.58 16 13 C -0.13 -5.75 8.84 71.98 0.64 -5.11 16 14 C -0.54 -28.15 8.34 25.60 0.21 -27.94 16 15 H 0.06 3.05 7.52 -2.91 -0.02 3.03 16 16 C 0.02 1.13 5.29 84.65 0.45 1.58 16 17 N -0.91 -51.14 11.99 21.45 0.26 -50.88 16 18 Si 0.96 41.87 29.54 68.60 2.03 43.90 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 22 C -0.14 -3.53 5.88 -20.70 -0.12 -3.65 16 23 C 0.30 7.82 14.23 88.33 1.26 9.08 16 24 N -0.46 -13.42 18.54 19.00 0.35 -13.07 16 25 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 0.87 7.69 -2.39 -0.02 0.85 16 27 H 0.10 0.88 8.13 -2.39 -0.02 0.86 16 28 H 0.20 2.22 8.06 -2.91 -0.02 2.19 16 29 H 0.42 11.12 5.88 -92.71 -0.55 10.58 16 30 H 0.06 1.75 8.09 -2.39 -0.02 1.73 16 31 H 0.08 1.80 6.36 -2.38 -0.02 1.79 16 32 H 0.09 2.57 6.53 -2.39 -0.02 2.55 16 33 H 0.05 2.08 6.88 -2.39 -0.02 2.06 16 34 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 2.83 6.84 -2.38 -0.02 2.81 16 36 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -64.12 322.41 5.14 -58.98 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.58 Total: 12.27 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 7.12 Total: 16.44 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -3.41 Total: -111.68 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: 7.86 SS G_CDS: -1.13 Total: 6.73 kcal Total: -64.12 5.14 -58.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578878687.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.988 kcal (2) G-P(sol) polarization free energy of solvation -64.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds