Wall clock time and date at job start Tue Mar 31 2020 06:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39771 * 119.66405 * 167.35318 * 3 2 1 5 5 C 1.38483 * 119.26339 * 179.97438 * 4 3 2 6 6 C 1.38603 * 118.58413 * 359.73260 * 5 4 3 7 7 C 1.39612 * 119.27160 * 0.50977 * 6 5 4 8 8 C 1.48004 * 119.66014 * 179.75107 * 7 6 5 9 9 O 1.21555 * 120.00285 * 7.22270 * 8 7 6 10 10 N 1.34780 * 120.00330 * 187.49573 * 8 7 6 11 11 C 1.36842 * 120.00015 * 191.14400 * 10 8 7 12 12 H 1.08008 * 119.99811 * 67.96434 * 11 10 8 13 13 C 1.39026 * 119.99880 * 247.95426 * 11 10 8 14 14 N 1.31334 * 120.00463 * 355.86820 * 13 11 10 15 15 Si 1.86804 * 119.99849 * 175.86102 * 13 11 10 16 16 H 1.48503 * 109.47271 * 65.00275 * 15 13 11 17 17 H 1.48496 * 109.47285 * 185.00636 * 15 13 11 18 18 H 1.48498 * 109.47176 * 305.00834 * 15 13 11 19 19 C 1.39702 * 119.99811 * 11.14533 * 10 8 7 20 20 C 1.38981 * 120.08051 * 236.16808 * 19 10 8 21 21 C 1.38086 * 119.91709 * 179.72263 * 20 19 10 22 22 C 1.38304 * 120.07963 * 0.54632 * 21 20 19 23 23 C 1.38312 * 120.16306 * 359.73048 * 22 21 20 24 24 C 1.38081 * 120.07805 * 359.97438 * 23 22 21 25 25 N 1.32432 * 119.66734 * 347.33078 * 3 2 1 26 26 H 1.08000 * 120.36726 * 359.97438 * 4 3 2 27 27 H 1.07998 * 120.70778 * 180.02562 * 5 4 3 28 28 H 1.08000 * 120.36773 * 180.28153 * 6 5 4 29 29 H 0.97003 * 120.00332 * 185.01330 * 14 13 11 30 30 H 1.07998 * 120.04038 * 359.96742 * 20 19 10 31 31 H 1.08002 * 119.95485 * 180.29623 * 21 20 19 32 32 H 1.08005 * 119.92065 * 179.70223 * 22 21 20 33 33 H 1.08001 * 119.96134 * 179.97438 * 23 22 21 34 34 H 1.07997 * 120.04066 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2592 1.1860 -0.2659 5 6 4.6440 1.1773 -0.2633 6 6 5.2992 -0.0131 0.0103 7 6 4.5487 -1.1630 0.2627 8 6 5.2394 -2.4399 0.5503 9 8 6.4461 -2.4589 0.6959 10 7 4.5312 -3.5827 0.6454 11 6 5.1237 -4.7163 1.1318 12 1 5.4149 -4.7704 2.1705 13 6 5.3505 -5.7985 0.2890 14 7 4.9237 -5.7647 -0.9526 15 14 6.2625 -7.3006 0.9225 16 1 5.4585 -7.9563 1.9850 17 1 6.4799 -8.2552 -0.1940 18 1 7.5743 -6.8845 1.4804 19 6 3.1924 -3.6100 0.2474 20 6 2.2088 -4.0209 1.1391 21 6 0.8858 -4.0410 0.7440 22 6 0.5404 -3.6637 -0.5410 23 6 1.5172 -3.2597 -1.4330 24 6 2.8414 -3.2312 -1.0429 25 7 3.2240 -1.1218 0.2524 26 1 2.7193 2.0986 -0.4712 27 1 5.2016 2.0799 -0.4653 28 1 6.3784 -0.0516 0.0243 29 1 5.0171 -6.5466 -1.5191 30 1 2.4784 -4.3203 2.1412 31 1 0.1204 -4.3557 1.4380 32 1 -0.4947 -3.6850 -0.8488 33 1 1.2438 -2.9661 -2.4357 34 1 3.6037 -2.9160 -1.7400 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589756821.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:33 Heat of formation + Delta-G solvation = 88.103408 kcal Electronic energy + Delta-G solvation = -22943.361636 eV Core-core repulsion = 19614.650129 eV Total energy + Delta-G solvation = -3328.711507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.58078 -38.85373 -37.46718 -36.28239 -34.66097 -32.79360 -31.96477 -31.34023 -29.95345 -28.53597 -25.80650 -24.66358 -23.78412 -21.93090 -21.50915 -20.29510 -18.54679 -17.61175 -17.18190 -16.14343 -15.78196 -15.31569 -15.22588 -14.72962 -14.25524 -14.09870 -13.95474 -13.50816 -13.22884 -13.07411 -12.87434 -12.63437 -12.49875 -12.44644 -12.02699 -11.67813 -11.58054 -11.17320 -11.02768 -10.64245 -10.39966 -10.23887 -9.95632 -9.76004 -9.12045 -9.03857 -8.85701 -8.07677 -7.89126 -7.01990 -6.29688 -4.40539 0.57938 1.04991 2.36101 2.41536 2.65406 2.82088 3.19018 3.23680 3.26979 3.61255 3.67910 3.98271 4.32759 4.38655 4.67310 4.81214 4.91295 4.99892 5.06490 5.15305 5.44628 5.54210 5.74888 5.81478 5.93008 5.97716 6.08190 6.36857 6.47869 6.48674 6.79834 6.95208 7.30932 7.40598 7.43259 7.48177 7.57466 7.75833 7.86403 8.29528 8.45034 8.99742 9.07672 9.73685 10.65843 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016829 B = 0.007176 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.352134 B = 3901.011248 C = 5124.553350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C 0.274 3.726 3 C 0.181 3.819 4 C -0.118 4.118 5 C -0.083 4.083 6 C -0.097 4.097 7 C 0.104 3.896 8 C 0.531 3.469 9 O -0.537 6.537 10 N -0.385 5.385 11 C -0.339 4.339 12 H 0.085 0.915 13 C 0.065 3.935 14 N -0.850 5.850 15 Si 0.921 3.079 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.267 1.267 19 C 0.225 3.775 20 C -0.126 4.126 21 C -0.115 4.115 22 C -0.152 4.152 23 C -0.117 4.117 24 C -0.091 4.091 25 N -0.401 5.401 26 H 0.143 0.857 27 H 0.148 0.852 28 H 0.153 0.847 29 H 0.272 0.728 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.216 10.743 -0.390 11.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.070 5.070 2 C -0.044 4.044 3 C 0.041 3.959 4 C -0.141 4.141 5 C -0.109 4.109 6 C -0.119 4.119 7 C -0.037 4.037 8 C 0.318 3.682 9 O -0.415 6.415 10 N -0.099 5.099 11 C -0.466 4.466 12 H 0.102 0.898 13 C -0.145 4.145 14 N -0.482 5.482 15 Si 0.747 3.253 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.192 1.192 19 C 0.133 3.867 20 C -0.146 4.146 21 C -0.134 4.134 22 C -0.170 4.170 23 C -0.136 4.136 24 C -0.111 4.111 25 N -0.114 5.114 26 H 0.161 0.839 27 H 0.166 0.834 28 H 0.171 0.829 29 H 0.082 0.918 30 H 0.131 0.869 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.673 9.820 -0.329 10.880 hybrid contribution 1.181 -0.193 -0.142 1.205 sum -3.492 9.626 -0.471 10.251 Atomic orbital electron populations 1.81173 1.11469 1.06983 1.07360 1.24932 0.91662 0.93635 0.94153 1.16462 0.86444 0.90583 1.02423 1.22078 0.95152 0.97954 0.98899 1.21501 0.93559 0.98526 0.97294 1.22413 1.02811 0.91789 0.94889 1.21922 0.88289 0.96088 0.97401 1.18279 0.86486 0.83001 0.80420 1.90658 1.12878 1.85811 1.52169 1.40633 1.06230 1.08130 1.54922 1.19050 1.41124 0.91244 0.95157 0.89770 1.25760 0.94460 0.99843 0.94446 1.69806 1.42081 1.30157 1.06192 0.86107 0.80498 0.80269 0.78456 1.19672 1.20782 1.19205 1.17769 0.84603 0.92791 0.91549 1.20883 0.91931 1.02651 0.99180 1.20697 0.95436 1.01264 0.95996 1.20689 0.97970 1.03882 0.94481 1.20644 0.92945 1.01682 0.98364 1.20745 0.95288 1.00699 0.94412 1.68244 1.09310 1.25390 1.08406 0.83931 0.83444 0.82888 0.91770 0.86869 0.87613 0.88028 0.87981 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.40 18.54 41.84 0.78 -5.62 16 2 C 0.27 4.16 15.53 -22.47 -0.35 3.81 16 3 C 0.18 2.64 6.58 -85.11 -0.56 2.08 16 4 C -0.12 -1.25 9.80 -38.92 -0.38 -1.63 16 5 C -0.08 -0.84 10.16 -39.36 -0.40 -1.24 16 6 C -0.10 -1.39 9.63 -38.93 -0.37 -1.76 16 7 C 0.10 1.94 6.20 -83.05 -0.52 1.42 16 8 C 0.53 12.59 7.35 -12.26 -0.09 12.50 16 9 O -0.54 -13.94 16.34 5.32 0.09 -13.85 16 10 N -0.39 -9.67 2.43 -59.93 -0.15 -9.81 16 11 C -0.34 -9.09 8.18 -15.02 -0.12 -9.21 16 12 H 0.08 2.23 7.84 -52.48 -0.41 1.82 16 13 C 0.07 1.72 5.45 -17.47 -0.10 1.62 16 14 N -0.85 -23.20 13.00 55.50 0.72 -22.48 16 15 Si 0.92 20.50 29.56 -169.99 -5.02 15.47 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 C 0.23 5.19 2.99 -83.72 -0.25 4.94 16 20 C -0.13 -2.73 9.58 -39.36 -0.38 -3.10 16 21 C -0.12 -2.20 10.04 -39.61 -0.40 -2.60 16 22 C -0.15 -2.82 10.04 -39.53 -0.40 -3.22 16 23 C -0.12 -2.27 10.04 -39.61 -0.40 -2.67 16 24 C -0.09 -1.98 7.03 -39.36 -0.28 -2.26 16 25 N -0.40 -7.17 5.80 -7.75 -0.04 -7.21 16 26 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 27 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.15 2.08 7.65 -52.49 -0.40 1.68 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.11 2.41 8.05 -52.49 -0.42 1.98 16 31 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.10 2.31 7.99 -52.49 -0.42 1.89 16 LS Contribution 315.71 15.07 4.76 4.76 Total: -1.00 -31.05 315.71 -6.76 -37.81 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -2.90 Total: 2.25 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -4.98 Total: -1.31 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 1.31 Total: -45.13 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.09 Total: -13.85 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.05 -6.76 -37.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589756821.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.917 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds