Wall clock time and date at job start Tue Mar 31 2020 06:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39771 * 119.66405 * 167.35318 * 3 2 1 5 5 C 1.38483 * 119.26339 * 179.97438 * 4 3 2 6 6 C 1.38603 * 118.58413 * 359.73260 * 5 4 3 7 7 C 1.39612 * 119.27160 * 0.50977 * 6 5 4 8 8 C 1.48004 * 119.66014 * 179.75107 * 7 6 5 9 9 O 1.21555 * 120.00285 * 7.22270 * 8 7 6 10 10 N 1.34780 * 120.00330 * 187.49573 * 8 7 6 11 11 C 1.36842 * 120.00015 * 191.14400 * 10 8 7 12 12 H 1.08008 * 119.99811 * 67.96434 * 11 10 8 13 13 C 1.39026 * 119.99880 * 247.95426 * 11 10 8 14 14 N 1.31334 * 120.00463 * 355.86820 * 13 11 10 15 15 Si 1.86804 * 119.99849 * 175.86102 * 13 11 10 16 16 H 1.48503 * 109.47271 * 65.00275 * 15 13 11 17 17 H 1.48496 * 109.47285 * 185.00636 * 15 13 11 18 18 H 1.48498 * 109.47176 * 305.00834 * 15 13 11 19 19 C 1.39702 * 119.99811 * 11.14533 * 10 8 7 20 20 C 1.38981 * 120.08051 * 236.16808 * 19 10 8 21 21 C 1.38086 * 119.91709 * 179.72263 * 20 19 10 22 22 C 1.38304 * 120.07963 * 0.54632 * 21 20 19 23 23 C 1.38312 * 120.16306 * 359.73048 * 22 21 20 24 24 C 1.38081 * 120.07805 * 359.97438 * 23 22 21 25 25 N 1.32432 * 119.66734 * 347.33078 * 3 2 1 26 26 H 1.08000 * 120.36726 * 359.97438 * 4 3 2 27 27 H 1.07998 * 120.70778 * 180.02562 * 5 4 3 28 28 H 1.08000 * 120.36773 * 180.28153 * 6 5 4 29 29 H 0.97003 * 120.00332 * 185.01330 * 14 13 11 30 30 H 1.07998 * 120.04038 * 359.96742 * 20 19 10 31 31 H 1.08002 * 119.95485 * 180.29623 * 21 20 19 32 32 H 1.08005 * 119.92065 * 179.70223 * 22 21 20 33 33 H 1.08001 * 119.96134 * 179.97438 * 23 22 21 34 34 H 1.07997 * 120.04066 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2592 1.1860 -0.2659 5 6 4.6440 1.1773 -0.2633 6 6 5.2992 -0.0131 0.0103 7 6 4.5487 -1.1630 0.2627 8 6 5.2394 -2.4399 0.5503 9 8 6.4461 -2.4589 0.6959 10 7 4.5312 -3.5827 0.6454 11 6 5.1237 -4.7163 1.1318 12 1 5.4149 -4.7704 2.1705 13 6 5.3505 -5.7985 0.2890 14 7 4.9237 -5.7647 -0.9526 15 14 6.2625 -7.3006 0.9225 16 1 5.4585 -7.9563 1.9850 17 1 6.4799 -8.2552 -0.1940 18 1 7.5743 -6.8845 1.4804 19 6 3.1924 -3.6100 0.2474 20 6 2.2088 -4.0209 1.1391 21 6 0.8858 -4.0410 0.7440 22 6 0.5404 -3.6637 -0.5410 23 6 1.5172 -3.2597 -1.4330 24 6 2.8414 -3.2312 -1.0429 25 7 3.2240 -1.1218 0.2524 26 1 2.7193 2.0986 -0.4712 27 1 5.2016 2.0799 -0.4653 28 1 6.3784 -0.0516 0.0243 29 1 5.0171 -6.5466 -1.5191 30 1 2.4784 -4.3203 2.1412 31 1 0.1204 -4.3557 1.4380 32 1 -0.4947 -3.6850 -0.8488 33 1 1.2438 -2.9661 -2.4357 34 1 3.6037 -2.9160 -1.7400 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589756821.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:33 Heat of formation + Delta-G solvation = 70.463701 kcal Electronic energy + Delta-G solvation = -22944.126551 eV Core-core repulsion = 19614.650129 eV Total energy + Delta-G solvation = -3329.476422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.93035 -40.36049 -39.13971 -37.50162 -36.46757 -34.20890 -33.49521 -32.62774 -31.54395 -30.21467 -27.55928 -25.80509 -25.23415 -23.49278 -23.13961 -21.73537 -19.89778 -19.43089 -18.66654 -17.42524 -17.13633 -16.97297 -16.65233 -16.26841 -15.91284 -15.66722 -15.46319 -14.85468 -14.73282 -14.43478 -14.19629 -14.07681 -13.87143 -13.78248 -13.47657 -13.24988 -13.09073 -13.00253 -12.81579 -12.30628 -12.09612 -11.86259 -11.20367 -10.98895 -10.91044 -10.63685 -10.22167 -9.80617 -9.49408 -8.82234 -8.20681 -6.45773 -0.52473 -0.05666 0.77161 0.83940 1.37167 1.41721 1.46330 1.48785 1.63430 2.17021 2.24821 2.51647 2.77843 2.92403 3.04166 3.28909 3.49626 3.89403 3.94444 4.05008 4.23103 4.27807 4.33755 4.41211 4.50013 4.78301 4.89110 4.99201 5.04587 5.19462 5.33960 5.39195 5.49366 5.72358 5.81478 5.89814 6.23804 6.31181 6.32145 6.49442 6.74196 7.07977 7.23127 7.87080 8.67299 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016829 B = 0.007176 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.352134 B = 3901.011248 C = 5124.553350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.285 3.715 3 C 0.162 3.838 4 C -0.082 4.082 5 C -0.057 4.057 6 C -0.093 4.093 7 C 0.068 3.932 8 C 0.521 3.479 9 O -0.580 6.580 10 N -0.405 5.405 11 C -0.362 4.362 12 H 0.071 0.929 13 C 0.021 3.979 14 N -0.880 5.880 15 Si 0.982 3.018 16 H -0.259 1.259 17 H -0.274 1.274 18 H -0.271 1.271 19 C 0.214 3.786 20 C -0.148 4.148 21 C -0.111 4.111 22 C -0.147 4.147 23 C -0.114 4.114 24 C -0.097 4.097 25 N -0.427 5.427 26 H 0.192 0.808 27 H 0.204 0.796 28 H 0.154 0.846 29 H 0.273 0.727 30 H 0.103 0.897 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.627 13.075 -1.126 13.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.032 4.032 3 C 0.021 3.979 4 C -0.104 4.104 5 C -0.082 4.082 6 C -0.115 4.115 7 C -0.072 4.072 8 C 0.310 3.690 9 O -0.462 6.462 10 N -0.119 5.119 11 C -0.489 4.489 12 H 0.088 0.912 13 C -0.185 4.185 14 N -0.513 5.513 15 Si 0.805 3.195 16 H -0.184 1.184 17 H -0.199 1.199 18 H -0.196 1.196 19 C 0.122 3.878 20 C -0.169 4.169 21 C -0.129 4.129 22 C -0.165 4.165 23 C -0.133 4.133 24 C -0.117 4.117 25 N -0.140 5.140 26 H 0.210 0.790 27 H 0.221 0.779 28 H 0.171 0.829 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.114 12.156 -1.060 13.648 hybrid contribution 1.554 -0.727 0.090 1.718 sum -4.560 11.429 -0.970 12.343 Atomic orbital electron populations 1.81181 1.12007 1.07635 1.08322 1.25025 0.91704 0.93021 0.93417 1.16706 0.86153 0.91308 1.03747 1.22633 0.95356 0.97864 0.94564 1.22063 0.93466 0.98383 0.94277 1.22565 1.02869 0.91961 0.94068 1.21151 0.89026 0.94935 1.02098 1.19007 0.86415 0.84603 0.78980 1.90585 1.14609 1.86961 1.53995 1.40836 1.07364 1.08272 1.55397 1.19161 1.41938 0.92782 0.95028 0.91174 1.26532 0.94886 1.02469 0.94604 1.69908 1.43450 1.30870 1.07120 0.85186 0.78991 0.77040 0.78308 1.18388 1.19923 1.19621 1.17832 0.83786 0.93876 0.92303 1.20974 0.93106 1.03927 0.98845 1.21005 0.94839 1.00138 0.96935 1.21027 0.99256 1.02385 0.93827 1.20903 0.91985 1.00804 0.99614 1.20580 0.95895 1.01669 0.93566 1.67901 1.09165 1.27692 1.09254 0.79035 0.77868 0.82869 0.91794 0.87926 0.84777 0.84915 0.85649 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -12.58 18.54 19.00 0.35 -12.23 16 2 C 0.29 8.04 15.53 88.33 1.37 9.41 16 3 C 0.16 4.35 6.58 40.67 0.27 4.62 16 4 C -0.08 -1.33 9.80 22.70 0.22 -1.11 16 5 C -0.06 -0.88 10.16 22.42 0.23 -0.65 16 6 C -0.09 -2.52 9.63 22.69 0.22 -2.31 16 7 C 0.07 2.58 6.20 41.96 0.26 2.85 16 8 C 0.52 26.25 7.35 86.83 0.64 26.89 16 9 O -0.58 -32.16 16.34 -3.89 -0.06 -32.23 16 10 N -0.40 -21.57 2.43 -461.78 -1.12 -22.69 16 11 C -0.36 -20.62 8.18 84.10 0.69 -19.93 16 12 H 0.07 4.02 7.84 -2.91 -0.02 4.00 16 13 C 0.02 1.18 5.45 84.96 0.46 1.64 16 14 N -0.88 -50.01 13.00 21.67 0.28 -49.73 16 15 Si 0.98 43.52 29.56 68.60 2.03 45.55 16 16 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 19 C 0.21 10.25 2.99 38.24 0.11 10.37 16 20 C -0.15 -6.60 9.58 22.41 0.21 -6.38 16 21 C -0.11 -4.13 10.04 22.25 0.22 -3.91 16 22 C -0.15 -5.16 10.04 22.30 0.22 -4.93 16 23 C -0.11 -4.32 10.04 22.25 0.22 -4.09 16 24 C -0.10 -4.31 7.03 22.41 0.16 -4.15 16 25 N -0.43 -15.26 5.80 -178.45 -1.03 -16.29 16 26 H 0.19 1.35 8.06 -2.91 -0.02 1.32 16 27 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 28 H 0.15 4.10 7.65 -2.91 -0.02 4.07 16 29 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.10 4.63 8.05 -2.91 -0.02 4.60 16 31 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 32 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 33 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 34 H 0.08 3.83 7.99 -2.91 -0.02 3.81 16 Total: -1.00 -74.22 315.71 7.10 -67.12 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 1.14 Total: 12.20 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 5.51 Total: 8.30 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -1.52 Total: -100.94 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.06 Total: -32.23 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -74.22 7.10 -67.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589756821.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.584 kcal (2) G-P(sol) polarization free energy of solvation -74.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds