Wall clock time and date at job start Tue Mar 31 2020 06:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 115.56236 * 2 1 4 4 C 1.53073 * 117.51243 * 214.29538 * 2 1 3 5 5 C 1.52999 * 117.49829 * 145.68467 * 2 1 3 6 6 H 1.09001 * 117.50387 * 215.00171 * 5 2 1 7 7 C 1.50700 * 117.49695 * 0.02562 * 5 2 1 8 8 O 1.21280 * 120.00239 * 359.91012 * 7 5 2 9 9 N 1.34779 * 119.99572 * 179.91012 * 7 5 2 10 10 C 1.37129 * 120.00172 * 5.08074 * 9 7 5 11 11 H 1.07992 * 120.00598 * 350.40096 * 10 9 7 12 12 C 1.38889 * 119.99982 * 170.12225 * 10 9 7 13 13 N 1.31432 * 119.99794 * 346.79115 * 12 10 9 14 14 Si 1.86797 * 120.00202 * 166.79184 * 12 10 9 15 15 H 1.48498 * 109.47357 * 89.99857 * 14 12 10 16 16 H 1.48504 * 109.47022 * 210.00013 * 14 12 10 17 17 H 1.48498 * 109.46993 * 329.99567 * 14 12 10 18 18 C 1.39812 * 119.99504 * 185.08214 * 9 7 5 19 19 C 1.38957 * 120.06535 * 97.40033 * 18 9 7 20 20 C 1.38071 * 119.93665 * 179.76985 * 19 18 9 21 21 C 1.38419 * 120.06095 * 0.49647 * 20 19 18 22 22 Cl 1.73604 * 119.93206 * 179.76968 * 21 20 19 23 23 C 1.38413 * 120.13361 * 359.75598 * 21 20 19 24 24 C 1.38072 * 120.06240 * 359.97438 * 23 21 20 25 25 H 1.09003 * 109.47307 * 274.31751 * 1 2 3 26 26 H 1.09003 * 109.47204 * 34.31118 * 1 2 3 27 27 H 1.09000 * 109.47497 * 154.31007 * 1 2 3 28 28 H 1.09002 * 109.47068 * 205.68962 * 3 2 1 29 29 H 1.09004 * 109.46756 * 325.68713 * 3 2 1 30 30 H 1.09002 * 109.47592 * 85.68715 * 3 2 1 31 31 H 1.09000 * 117.49280 * 145.04097 * 4 2 1 32 32 H 1.08992 * 117.53457 * 359.97438 * 4 2 1 33 33 H 0.96996 * 120.00008 * 185.01864 * 13 12 10 34 34 H 1.08008 * 120.03302 * 0.02562 * 19 18 9 35 35 H 1.08005 * 119.96928 * 180.25452 * 20 19 18 36 36 H 1.08001 * 119.96927 * 179.97438 * 23 21 20 37 37 H 1.08002 * 120.03068 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2371 -1.1216 -0.7650 5 6 2.2364 -1.1209 0.7651 6 1 3.1713 -0.8751 1.2687 7 6 1.3719 -2.1408 1.4605 8 8 0.1637 -2.0528 1.4018 9 7 1.9415 -3.1508 2.1476 10 6 3.3034 -3.1927 2.3019 11 1 3.9310 -2.5103 1.7481 12 6 3.8755 -4.1091 3.1749 13 7 3.1223 -4.7520 4.0390 14 14 5.7153 -4.4277 3.1208 15 1 6.4071 -3.4921 4.0434 16 1 5.9879 -5.8265 3.5383 17 1 6.2135 -4.2179 1.7377 18 6 1.1437 -4.1557 2.7029 19 6 0.9677 -5.3575 2.0280 20 6 0.1831 -6.3499 2.5811 21 6 -0.4362 -6.1445 3.8019 22 17 -1.4268 -7.3923 4.4914 23 6 -0.2670 -4.9464 4.4740 24 6 0.5209 -3.9525 3.9284 25 1 -0.3634 0.0774 1.0248 26 1 -0.3634 0.8489 -0.5793 27 1 -0.3634 -0.9261 -0.4455 28 1 3.1824 1.3084 -0.4455 29 1 1.5811 2.0742 -0.5793 30 1 2.2772 1.7414 1.0247 31 1 3.1723 -0.8757 -1.2679 32 1 1.6127 -1.8598 -1.2680 33 1 3.5299 -5.3369 4.6967 34 1 1.4476 -5.5168 1.0736 35 1 0.0493 -7.2858 2.0589 36 1 -0.7518 -4.7889 5.4262 37 1 0.6529 -3.0180 4.4536 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592651977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:28 Heat of formation + Delta-G solvation = 6.837234 kcal Electronic energy + Delta-G solvation = -21512.488338 eV Core-core repulsion = 18281.360360 eV Total energy + Delta-G solvation = -3231.127979 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43206 -39.82586 -38.08638 -37.16314 -36.35838 -33.52459 -31.82497 -30.98792 -29.82277 -28.24145 -26.84392 -25.32554 -23.58058 -22.81270 -21.07642 -20.28347 -18.93414 -18.13484 -17.62713 -16.69565 -16.56051 -16.12957 -15.51693 -15.36651 -14.88726 -14.73631 -14.35506 -14.29375 -14.15025 -14.00159 -13.52429 -13.30845 -13.05534 -12.92148 -12.89317 -12.64654 -12.52342 -12.26161 -12.13775 -12.05868 -12.00500 -11.71397 -11.27941 -10.96386 -10.57917 -10.14914 -9.96102 -9.74556 -9.33682 -8.04805 -5.91231 0.50315 0.62319 1.27651 1.39651 1.47995 1.57555 1.84176 2.26627 2.74608 2.93233 2.97982 3.23273 3.86059 3.96556 4.01277 4.07729 4.09758 4.29553 4.47816 4.53946 4.69573 4.77860 4.87754 4.88652 4.90610 5.09262 5.14777 5.15369 5.18678 5.19984 5.26886 5.37928 5.41352 5.46734 5.65589 5.76012 5.87413 6.03172 6.53484 7.12003 7.51759 7.94564 8.74381 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.006244 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.936490 B = 4483.039220 C = 6104.764750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.100 4.100 3 C -0.107 4.107 4 C -0.136 4.136 5 C -0.177 4.177 6 H 0.121 0.879 7 C 0.484 3.516 8 O -0.613 6.613 9 N -0.430 5.430 10 C -0.358 4.358 11 H 0.117 0.883 12 C -0.001 4.001 13 N -0.878 5.878 14 Si 0.986 3.014 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.260 1.260 18 C 0.238 3.762 19 C -0.132 4.132 20 C -0.102 4.102 21 C -0.056 4.056 22 Cl -0.075 7.075 23 C -0.105 4.105 24 C -0.080 4.080 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.125 0.875 32 H 0.080 0.920 33 H 0.268 0.732 34 H 0.112 0.888 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.443 2.986 -4.359 5.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.164 4.164 4 C -0.174 4.174 5 C -0.198 4.198 6 H 0.139 0.861 7 C 0.276 3.724 8 O -0.500 6.500 9 N -0.146 5.146 10 C -0.484 4.484 11 H 0.134 0.866 12 C -0.204 4.204 13 N -0.515 5.515 14 Si 0.810 3.190 15 H -0.200 1.200 16 H -0.214 1.214 17 H -0.184 1.184 18 C 0.147 3.853 19 C -0.152 4.152 20 C -0.121 4.121 21 C -0.082 4.082 22 Cl -0.047 7.047 23 C -0.124 4.124 24 C -0.100 4.100 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.143 0.857 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.130 0.870 35 H 0.162 0.838 36 H 0.156 0.844 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.076 2.714 -4.195 5.111 hybrid contribution 0.958 -0.684 0.697 1.368 sum -0.118 2.030 -3.498 4.046 Atomic orbital electron populations 1.21167 0.92061 1.00584 1.00865 1.21738 0.95192 0.91705 1.01427 1.21368 1.00597 0.92175 1.02297 1.23202 1.03047 1.00643 0.90502 1.22114 1.01533 1.00155 0.95968 0.86076 1.20007 0.87688 0.82433 0.82308 1.90544 1.15739 1.76788 1.66933 1.41615 1.06791 1.19526 1.46701 1.20042 0.80151 1.21170 1.27013 0.86573 1.26017 1.03895 0.95784 0.94754 1.70018 1.36341 1.28699 1.16440 0.85019 0.77702 0.77198 0.79086 1.19987 1.21434 1.18352 1.17359 0.88507 0.88297 0.91135 1.21009 1.00351 0.93558 1.00271 1.20796 0.97394 0.99383 0.94568 1.20619 1.00376 0.90973 0.96257 1.98293 1.68886 1.52820 1.84676 1.20768 0.99612 0.91899 1.00162 1.20760 0.96518 0.98273 0.94438 0.94173 0.91295 0.94221 0.90877 0.90279 0.92438 0.85655 0.90124 0.92089 0.86964 0.83840 0.84386 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.00 8.09 71.98 0.58 -2.41 16 2 C -0.10 -3.08 2.70 -52.16 -0.14 -3.22 16 3 C -0.11 -2.44 9.85 71.98 0.71 -1.73 16 4 C -0.14 -4.17 9.53 30.62 0.29 -3.88 16 5 C -0.18 -6.64 4.85 -11.54 -0.06 -6.70 16 6 H 0.12 4.42 6.76 -2.39 -0.02 4.41 16 7 C 0.48 22.87 7.35 87.66 0.64 23.52 16 8 O -0.61 -31.41 13.08 -3.03 -0.04 -31.45 16 9 N -0.43 -21.34 2.66 -458.89 -1.22 -22.56 16 10 C -0.36 -17.39 9.28 84.02 0.78 -16.61 16 11 H 0.12 5.22 5.99 -2.91 -0.02 5.20 16 12 C 0.00 -0.05 5.32 84.91 0.45 0.40 16 13 N -0.88 -44.53 9.91 21.65 0.21 -44.31 16 14 Si 0.99 38.60 29.58 68.60 2.03 40.63 16 15 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 16 H -0.29 -11.54 7.11 99.48 0.71 -10.84 16 17 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 18 C 0.24 11.70 2.23 38.21 0.09 11.79 16 19 C -0.13 -6.00 9.76 22.40 0.22 -5.78 16 20 C -0.10 -4.05 9.82 22.27 0.22 -3.84 16 21 C -0.06 -2.15 6.32 22.35 0.14 -2.01 16 22 Cl -0.08 -2.40 28.95 -2.72 -0.08 -2.48 16 23 C -0.11 -4.31 9.82 22.27 0.22 -4.09 16 24 C -0.08 -3.80 8.66 22.40 0.19 -3.60 16 25 H 0.04 1.53 7.26 -2.39 -0.02 1.51 16 26 H 0.07 1.82 7.92 -2.39 -0.02 1.80 16 27 H 0.04 1.48 7.02 -2.39 -0.02 1.47 16 28 H 0.07 1.41 7.90 -2.39 -0.02 1.39 16 29 H 0.08 1.49 7.92 -2.38 -0.02 1.47 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.13 3.02 8.05 -2.39 -0.02 3.00 16 32 H 0.08 2.65 8.05 -2.39 -0.02 2.63 16 33 H 0.27 13.26 8.32 -92.71 -0.77 12.49 16 34 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 35 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 36 H 0.14 4.90 8.06 -2.91 -0.02 4.88 16 37 H 0.10 4.75 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -58.25 324.63 6.32 -51.93 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 1.07 Total: 26.41 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 4.34 Total: -18.18 kcal Atomic # 7 Polarization: -65.86 SS G_CDS: -1.00 Total: -66.87 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.04 Total: -31.45 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Atomic # 17 Polarization: -2.40 SS G_CDS: -0.08 Total: -2.48 kcal Total: -58.25 6.32 -51.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592651977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.769 kcal (2) G-P(sol) polarization free energy of solvation -58.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds