Wall clock time and date at job start Tue Mar 31 2020 06:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.30895 * 121.68994 * 2 1 4 4 S 1.75721 * 109.69762 * 180.02562 * 3 2 1 5 5 C 1.76448 * 90.71994 * 359.97438 * 4 3 2 6 6 N 1.33057 * 129.52466 * 180.02562 * 5 4 3 7 7 C 1.32417 * 121.91282 * 179.97438 * 6 5 4 8 8 C 1.50691 * 120.26483 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.47453 * 295.00889 * 8 7 6 10 10 C 1.46896 * 110.99778 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.47628 * 35.00036 * 10 9 8 12 12 C 1.53004 * 109.47364 * 274.99610 * 10 9 8 13 13 C 1.50701 * 109.46946 * 154.99918 * 10 9 8 14 14 H 1.08002 * 120.00293 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00279 * 180.02562 * 13 10 9 16 16 N 1.31512 * 119.99891 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 120.00253 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.46991 * 59.99612 * 17 15 13 19 19 H 1.48495 * 109.47164 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47056 * 299.99898 * 17 15 13 21 21 C 1.37881 * 119.47580 * 359.85793 * 7 6 5 22 22 C 1.39662 * 118.80999 * 0.33210 * 21 7 6 23 23 O 1.22103 * 120.19939 * 179.88178 * 22 21 7 24 24 N 1.35364 * 109.13725 * 359.97438 * 5 4 3 25 25 H 1.09004 * 109.47407 * 269.97431 * 1 2 3 26 26 H 1.09001 * 109.47767 * 29.97932 * 1 2 3 27 27 H 1.09006 * 109.47043 * 149.97909 * 1 2 3 28 28 H 1.07997 * 125.15328 * 0.05656 * 3 2 1 29 29 H 1.09010 * 109.46818 * 55.00445 * 8 7 6 30 30 H 1.09004 * 109.47380 * 175.00316 * 8 7 6 31 31 H 1.00898 * 111.00097 * 56.04124 * 9 8 7 32 32 H 1.08998 * 109.46979 * 180.02562 * 12 10 9 33 33 H 1.08999 * 109.46753 * 300.00415 * 12 10 9 34 34 H 1.08991 * 109.46982 * 60.00175 * 12 10 9 35 35 H 0.96999 * 120.00055 * 180.02562 * 16 15 13 36 36 H 1.07993 * 120.59292 * 180.19646 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1946 1.1138 0.0000 4 16 3.9134 0.7487 -0.0007 5 6 3.5685 -0.9818 -0.0002 6 7 4.4095 -2.0128 0.0000 7 6 3.9809 -3.2657 0.0009 8 6 4.9666 -4.4056 0.0018 9 7 5.7299 -4.3940 -1.2533 10 6 6.7033 -5.4936 -1.2876 11 1 6.2858 -6.3643 -0.7822 12 6 7.9881 -5.0598 -0.5790 13 6 7.0138 -5.8450 -2.7198 14 1 6.5355 -5.3058 -3.5241 15 6 7.9077 -6.8557 -3.0035 16 7 8.4898 -7.5128 -2.0241 17 14 8.2921 -7.2919 -4.7787 18 1 8.8611 -6.1058 -5.4677 19 1 9.2761 -8.4034 -4.8134 20 1 7.0449 -7.7126 -5.4662 21 6 2.6256 -3.5192 0.0046 22 6 1.7391 -2.4400 0.0001 23 8 0.5338 -2.6353 0.0010 24 7 2.2276 -1.1670 0.0010 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3635 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5142 28 1 1.7699 2.1067 0.0009 29 1 5.6501 -4.2942 0.8437 30 1 4.4299 -5.3500 0.0920 31 1 6.1850 -3.5041 -1.3916 32 1 8.7104 -5.8756 -0.6048 33 1 8.4055 -4.1890 -1.0845 34 1 7.7635 -4.8056 0.4568 35 1 9.1189 -8.2236 -2.2236 36 1 2.2562 -4.5340 0.0085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:35 Heat of formation + Delta-G solvation = 42.749577 kcal Electronic energy + Delta-G solvation = -20586.600185 eV Core-core repulsion = 17391.365940 eV Total energy + Delta-G solvation = -3195.234245 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.53302 -38.11485 -37.85501 -35.82594 -33.13579 -32.04384 -31.03723 -29.02817 -28.64079 -25.82691 -25.10540 -24.69642 -22.52281 -21.13922 -20.23561 -18.83788 -18.36610 -17.11670 -16.91297 -16.35295 -15.43964 -14.86693 -14.78321 -14.46707 -14.17378 -13.87092 -13.60266 -13.57178 -13.31750 -13.18594 -12.90177 -12.35102 -12.03615 -11.62686 -11.57564 -11.50545 -10.90690 -10.82348 -10.57548 -10.39819 -10.23038 -10.15461 -10.10700 -9.84380 -9.36076 -9.02703 -8.35490 -7.77332 -7.31977 -5.98217 -4.01478 0.03840 0.37910 1.11775 1.16886 1.76271 2.04435 3.36114 3.39692 3.42767 3.46170 3.96839 4.05888 4.44891 4.58547 4.68342 4.84949 5.01223 5.20745 5.29758 5.33578 5.42443 5.46843 5.73330 5.77969 5.98159 6.03842 6.23194 6.35752 6.68900 6.85247 7.07039 7.30167 7.52733 7.61038 7.74098 7.86389 8.23781 8.48407 8.56749 9.04967 9.63671 11.08870 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.003439 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.205970 B = 8139.698972 C = 8450.565414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.099 3.901 3 C -0.251 4.251 4 S 0.204 5.796 5 C 0.300 3.700 6 N -0.501 5.501 7 C 0.233 3.767 8 C 0.104 3.896 9 N -0.675 5.675 10 C 0.211 3.789 11 H 0.036 0.964 12 C -0.169 4.169 13 C -0.496 4.496 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.899 3.101 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.277 1.277 21 C -0.301 4.301 22 C 0.528 3.472 23 O -0.530 6.530 24 N -0.458 5.458 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.198 0.802 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.335 0.665 32 H 0.090 0.910 33 H 0.029 0.971 34 H 0.006 0.994 35 H 0.260 0.740 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.933 18.490 7.007 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.009 4.009 3 C -0.388 4.388 4 S 0.455 5.545 5 C -0.067 4.067 6 N -0.228 5.228 7 C 0.104 3.896 8 C -0.026 4.026 9 N -0.306 5.306 10 C 0.104 3.896 11 H 0.054 0.946 12 C -0.229 4.229 13 C -0.535 4.535 14 H 0.080 0.920 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.727 3.273 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.203 1.203 21 C -0.330 4.330 22 C 0.333 3.667 23 O -0.410 6.410 24 N -0.170 5.170 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.120 0.880 28 H 0.215 0.785 29 H 0.068 0.932 30 H 0.110 0.890 31 H 0.152 0.848 32 H 0.108 0.892 33 H 0.048 0.952 34 H 0.025 0.975 35 H 0.070 0.930 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.042 18.607 6.679 22.644 hybrid contribution -0.915 -0.846 -0.289 1.279 sum -11.957 17.760 6.390 22.343 Atomic orbital electron populations 1.20975 0.85575 1.05546 1.04438 1.19593 0.97295 0.83693 1.00356 1.24875 0.96623 1.02344 1.14950 1.85279 1.02452 0.87899 1.78838 1.26162 0.81470 1.02603 0.96419 1.68003 1.32531 0.98022 1.24235 1.21710 0.93536 0.90524 0.83787 1.20962 0.94049 0.92829 0.94736 1.60961 1.31705 1.08467 1.29483 1.19225 0.85876 0.87905 0.96577 0.94574 1.22432 1.03223 1.01718 0.95490 1.21086 1.23646 1.17061 0.91665 0.91964 1.24933 0.96001 0.96170 0.97331 1.69868 1.29562 1.23310 1.30988 0.86550 0.78009 0.77816 0.84946 1.20362 1.21452 1.20273 1.22612 0.92408 0.99813 1.18174 1.17357 0.90187 0.80132 0.79041 1.90899 1.14920 1.82756 1.52413 1.45202 1.07171 1.09191 1.55439 0.89708 0.89749 0.87973 0.78467 0.93198 0.88971 0.84779 0.89151 0.95180 0.97482 0.92974 0.81714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.40 36.00 0.34 -0.55 16 2 C 0.10 1.01 6.60 -81.90 -0.54 0.47 16 3 C -0.25 -1.83 10.79 29.04 0.31 -1.51 16 4 S 0.20 1.84 23.37 -107.50 -2.51 -0.67 16 5 C 0.30 4.08 8.32 -87.91 -0.73 3.35 16 6 N -0.50 -7.97 10.26 -9.02 -0.09 -8.06 16 7 C 0.23 3.84 6.35 -82.48 -0.52 3.32 16 8 C 0.10 1.86 5.89 -4.98 -0.03 1.83 16 9 N -0.68 -14.40 6.22 -109.22 -0.68 -15.08 16 10 C 0.21 5.24 2.57 -68.86 -0.18 5.07 16 11 H 0.04 0.97 7.80 -51.93 -0.41 0.56 16 12 C -0.17 -4.03 8.94 37.16 0.33 -3.69 16 13 C -0.50 -13.69 8.84 -34.44 -0.30 -14.00 16 14 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 15 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 16 N -0.90 -25.50 11.32 55.43 0.63 -24.88 16 17 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.30 -4.82 9.67 -39.18 -0.38 -5.20 16 22 C 0.53 8.46 7.50 -15.01 -0.11 8.35 16 23 O -0.53 -9.22 14.79 4.82 0.07 -9.15 16 24 N -0.46 -6.24 2.82 -62.10 -0.18 -6.41 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 27 H 0.10 1.15 5.92 -51.93 -0.31 0.84 16 28 H 0.20 0.66 8.06 -52.49 -0.42 0.24 16 29 H 0.05 0.87 7.44 -51.92 -0.39 0.48 16 30 H 0.09 1.57 7.83 -51.93 -0.41 1.16 16 31 H 0.33 7.04 8.38 -39.29 -0.33 6.71 16 32 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 33 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.01 0.13 7.45 -51.93 -0.39 -0.25 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.17 2.45 7.98 -52.49 -0.42 2.03 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -31.37 317.24 -9.10 -40.47 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.19 Total: 3.59 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -1.91 Total: -1.11 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.32 Total: -54.42 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.07 Total: -9.15 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.51 Total: -0.67 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.37 -9.10 -40.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.215 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds