Wall clock time and date at job start Tue Mar 31 2020 06:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.30895 * 121.68994 * 2 1 4 4 S 1.75721 * 109.69762 * 180.02562 * 3 2 1 5 5 C 1.76448 * 90.71994 * 359.97438 * 4 3 2 6 6 N 1.33057 * 129.52466 * 180.02562 * 5 4 3 7 7 C 1.32417 * 121.91282 * 179.97438 * 6 5 4 8 8 C 1.50691 * 120.26483 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.47453 * 295.00889 * 8 7 6 10 10 C 1.46896 * 110.99778 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.47628 * 35.00036 * 10 9 8 12 12 C 1.53004 * 109.47364 * 274.99610 * 10 9 8 13 13 C 1.50701 * 109.46946 * 154.99918 * 10 9 8 14 14 H 1.08002 * 120.00293 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00279 * 180.02562 * 13 10 9 16 16 N 1.31512 * 119.99891 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 120.00253 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.46991 * 59.99612 * 17 15 13 19 19 H 1.48495 * 109.47164 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47056 * 299.99898 * 17 15 13 21 21 C 1.37881 * 119.47580 * 359.85793 * 7 6 5 22 22 C 1.39662 * 118.80999 * 0.33210 * 21 7 6 23 23 O 1.22103 * 120.19939 * 179.88178 * 22 21 7 24 24 N 1.35364 * 109.13725 * 359.97438 * 5 4 3 25 25 H 1.09004 * 109.47407 * 269.97431 * 1 2 3 26 26 H 1.09001 * 109.47767 * 29.97932 * 1 2 3 27 27 H 1.09006 * 109.47043 * 149.97909 * 1 2 3 28 28 H 1.07997 * 125.15328 * 0.05656 * 3 2 1 29 29 H 1.09010 * 109.46818 * 55.00445 * 8 7 6 30 30 H 1.09004 * 109.47380 * 175.00316 * 8 7 6 31 31 H 1.00898 * 111.00097 * 56.04124 * 9 8 7 32 32 H 1.08998 * 109.46979 * 180.02562 * 12 10 9 33 33 H 1.08999 * 109.46753 * 300.00415 * 12 10 9 34 34 H 1.08991 * 109.46982 * 60.00175 * 12 10 9 35 35 H 0.96999 * 120.00055 * 180.02562 * 16 15 13 36 36 H 1.07993 * 120.59292 * 180.19646 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1946 1.1138 0.0000 4 16 3.9134 0.7487 -0.0007 5 6 3.5685 -0.9818 -0.0002 6 7 4.4095 -2.0128 0.0000 7 6 3.9809 -3.2657 0.0009 8 6 4.9666 -4.4056 0.0018 9 7 5.7299 -4.3940 -1.2533 10 6 6.7033 -5.4936 -1.2876 11 1 6.2858 -6.3643 -0.7822 12 6 7.9881 -5.0598 -0.5790 13 6 7.0138 -5.8450 -2.7198 14 1 6.5355 -5.3058 -3.5241 15 6 7.9077 -6.8557 -3.0035 16 7 8.4898 -7.5128 -2.0241 17 14 8.2921 -7.2919 -4.7787 18 1 8.8611 -6.1058 -5.4677 19 1 9.2761 -8.4034 -4.8134 20 1 7.0449 -7.7126 -5.4662 21 6 2.6256 -3.5192 0.0046 22 6 1.7391 -2.4400 0.0001 23 8 0.5338 -2.6353 0.0010 24 7 2.2276 -1.1670 0.0010 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3635 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5142 28 1 1.7699 2.1067 0.0009 29 1 5.6501 -4.2942 0.8437 30 1 4.4299 -5.3500 0.0920 31 1 6.1850 -3.5041 -1.3916 32 1 8.7104 -5.8756 -0.6048 33 1 8.4055 -4.1890 -1.0845 34 1 7.7635 -4.8056 0.4568 35 1 9.1189 -8.2236 -2.2236 36 1 2.2562 -4.5340 0.0085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602869303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:35 Heat of formation + Delta-G solvation = 22.054916 kcal Electronic energy + Delta-G solvation = -20587.497573 eV Core-core repulsion = 17391.365940 eV Total energy + Delta-G solvation = -3196.131633 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.56623 -39.26235 -39.00899 -37.48397 -34.73064 -33.38733 -32.28283 -30.52477 -29.55281 -27.35488 -27.04809 -25.79723 -23.71774 -22.17166 -22.13046 -19.77169 -19.50433 -18.52715 -17.95941 -17.89726 -16.82988 -16.59369 -16.27664 -15.66661 -15.15216 -15.00880 -14.83320 -14.75387 -14.44880 -14.40013 -14.02445 -13.75555 -13.57237 -13.22229 -12.97624 -12.80192 -12.71891 -12.33623 -12.30104 -12.13962 -11.91223 -11.37291 -11.26872 -11.22533 -10.98300 -10.46663 -10.42337 -9.04580 -8.73105 -8.08533 -6.19306 -1.02070 -0.52826 0.20085 0.41598 0.71299 1.09441 1.44973 1.46488 1.54272 2.27311 2.46288 2.86300 3.07545 3.20146 3.53184 3.85261 3.86468 4.13135 4.22513 4.24618 4.52651 4.57774 4.61847 4.64738 4.74080 4.82618 4.93070 5.01855 5.09413 5.15463 5.38651 5.39868 5.70592 5.81180 6.25838 6.38764 6.46822 6.59748 6.73177 6.92874 7.50019 8.96924 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.003439 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.205970 B = 8139.698972 C = 8450.565414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.056 3.944 3 C -0.209 4.209 4 S 0.270 5.730 5 C 0.277 3.723 6 N -0.530 5.530 7 C 0.236 3.764 8 C 0.109 3.891 9 N -0.679 5.679 10 C 0.216 3.784 11 H 0.012 0.988 12 C -0.156 4.156 13 C -0.517 4.517 14 H 0.052 0.948 15 C 0.012 3.988 16 N -0.921 5.921 17 Si 0.959 3.041 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.275 1.275 21 C -0.323 4.323 22 C 0.522 3.478 23 O -0.557 6.557 24 N -0.458 5.458 25 H 0.088 0.912 26 H 0.122 0.878 27 H 0.067 0.933 28 H 0.250 0.750 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.337 0.663 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.028 0.972 35 H 0.262 0.738 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.196 21.774 6.755 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.051 4.051 3 C -0.345 4.345 4 S 0.522 5.478 5 C -0.087 4.087 6 N -0.258 5.258 7 C 0.106 3.894 8 C -0.021 4.021 9 N -0.310 5.310 10 C 0.108 3.892 11 H 0.030 0.970 12 C -0.215 4.215 13 C -0.556 4.556 14 H 0.070 0.930 15 C -0.187 4.187 16 N -0.561 5.561 17 Si 0.785 3.215 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.201 1.201 21 C -0.353 4.353 22 C 0.327 3.673 23 O -0.439 6.439 24 N -0.168 5.168 25 H 0.107 0.893 26 H 0.140 0.860 27 H 0.086 0.914 28 H 0.266 0.734 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.154 0.846 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.320 21.966 6.435 25.536 hybrid contribution -0.840 -1.599 -0.163 1.814 sum -12.160 20.367 6.272 24.536 Atomic orbital electron populations 1.20961 0.84506 1.05669 1.04785 1.20046 0.98305 0.83172 1.03590 1.25572 0.95446 1.03444 1.10043 1.85241 1.03186 0.83458 1.75924 1.26993 0.81460 1.04449 0.95830 1.67945 1.33421 0.98124 1.26331 1.21379 0.93012 0.90801 0.84240 1.20884 0.94018 0.93893 0.93256 1.60769 1.30768 1.07522 1.31925 1.18993 0.86864 0.88225 0.95125 0.97044 1.22232 1.01940 1.00612 0.96732 1.21379 1.23934 1.17454 0.92812 0.92956 1.25669 0.95818 0.96037 1.01155 1.69987 1.29827 1.23547 1.32698 0.85591 0.77790 0.77728 0.80359 1.19691 1.20854 1.20095 1.22596 0.92535 1.00236 1.19936 1.17286 0.89768 0.81132 0.79140 1.90879 1.15583 1.83522 1.53880 1.45168 1.07641 1.09618 1.54360 0.89313 0.85980 0.91383 0.73436 0.92723 0.88927 0.84578 0.91706 0.95020 0.95338 0.92914 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 9.40 71.23 0.67 -0.81 16 2 C 0.06 0.99 6.60 41.79 0.28 1.27 16 3 C -0.21 -2.01 10.79 67.89 0.73 -1.28 16 4 S 0.27 3.86 23.37 -56.49 -1.32 2.54 16 5 C 0.28 7.18 8.32 179.40 1.49 8.67 16 6 N -0.53 -16.77 10.26 -182.44 -1.87 -18.64 16 7 C 0.24 8.02 6.35 42.38 0.27 8.28 16 8 C 0.11 4.00 5.89 85.55 0.50 4.50 16 9 N -0.68 -29.55 6.22 -499.46 -3.11 -32.65 16 10 C 0.22 10.96 2.57 44.17 0.11 11.08 16 11 H 0.01 0.64 7.80 -2.39 -0.02 0.62 16 12 C -0.16 -7.47 8.94 71.98 0.64 -6.83 16 13 C -0.52 -29.04 8.84 25.60 0.23 -28.81 16 14 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 15 C 0.01 0.65 5.30 84.65 0.45 1.10 16 16 N -0.92 -52.99 11.32 21.45 0.24 -52.74 16 17 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 C -0.32 -10.86 9.67 22.53 0.22 -10.65 16 22 C 0.52 17.22 7.50 84.34 0.63 17.85 16 23 O -0.56 -20.18 14.79 -5.65 -0.08 -20.27 16 24 N -0.46 -12.11 2.82 -467.53 -1.32 -13.43 16 25 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.12 0.79 8.10 -2.39 -0.02 0.78 16 27 H 0.07 1.53 5.92 -2.38 -0.01 1.51 16 28 H 0.25 -0.18 8.06 -2.91 -0.02 -0.20 16 29 H 0.05 1.93 7.44 -2.38 -0.02 1.92 16 30 H 0.09 3.31 7.83 -2.38 -0.02 3.30 16 31 H 0.34 14.31 8.38 -89.70 -0.75 13.56 16 32 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16 33 H 0.03 1.46 8.13 -2.39 -0.02 1.44 16 34 H 0.03 1.20 7.45 -2.39 -0.02 1.18 16 35 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.16 5.26 7.98 -2.91 -0.02 5.23 16 Total: -1.00 -70.53 317.24 1.16 -69.37 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.37 Total: 15.10 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 6.23 Total: 4.37 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -6.06 Total: -117.47 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.08 Total: -20.27 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.32 Total: 2.54 kcal Total: -70.53 1.16 -69.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.420 kcal (2) G-P(sol) polarization free energy of solvation -70.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds