Wall clock time and date at job start Tue Mar 31 2020 06:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30885 * 121.69302 * 2 1 4 4 S 1.75727 * 109.69837 * 180.02562 * 3 2 1 5 5 C 1.76444 * 90.71760 * 359.97438 * 4 3 2 6 6 N 1.33061 * 129.52198 * 180.28418 * 5 4 3 7 7 C 1.32422 * 121.90635 * 180.22077 * 6 5 4 8 8 C 1.50703 * 120.25840 * 179.75831 * 7 6 5 9 9 N 1.46899 * 109.47107 * 294.71892 * 8 7 6 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.46835 * 325.00273 * 10 9 8 12 12 C 1.52997 * 109.46874 * 85.00270 * 10 9 8 13 13 C 1.50699 * 109.46851 * 204.99994 * 10 9 8 14 14 H 1.07998 * 120.00472 * 0.02562 * 13 10 9 15 15 C 1.37879 * 119.99705 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99689 * 0.02562 * 15 13 10 17 17 Si 1.86794 * 120.00273 * 180.02562 * 15 13 10 18 18 H 1.48505 * 109.46883 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47106 * 119.99879 * 17 15 13 20 20 H 1.48500 * 109.47397 * 240.00177 * 17 15 13 21 21 C 1.37875 * 119.48009 * 359.47823 * 7 6 5 22 22 C 1.39662 * 118.80942 * 0.25815 * 21 7 6 23 23 O 1.22100 * 120.19358 * 180.02562 * 22 21 7 24 24 N 1.35365 * 109.14178 * 0.02562 * 5 4 3 25 25 H 1.09005 * 109.46995 * 269.97766 * 1 2 3 26 26 H 1.09002 * 109.46695 * 29.97790 * 1 2 3 27 27 H 1.09001 * 109.46944 * 149.97663 * 1 2 3 28 28 H 1.07997 * 125.15692 * 0.03946 * 3 2 1 29 29 H 1.09002 * 109.47152 * 174.71980 * 8 7 6 30 30 H 1.09001 * 109.46980 * 54.72080 * 8 7 6 31 31 H 1.00902 * 111.00582 * 303.95889 * 9 8 7 32 32 H 1.09007 * 109.47280 * 59.99720 * 12 10 9 33 33 H 1.08997 * 109.47489 * 179.97438 * 12 10 9 34 34 H 1.09007 * 109.47004 * 300.00081 * 12 10 9 35 35 H 0.97006 * 119.99890 * 179.97438 * 16 15 13 36 36 H 1.08001 * 120.59196 * 180.27324 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.1137 0.0000 4 16 3.9136 0.7485 -0.0007 5 6 3.5685 -0.9819 -0.0002 6 7 4.4095 -2.0130 0.0047 7 6 3.9808 -3.2659 -0.0001 8 6 4.9665 -4.4059 0.0003 9 7 5.7291 -4.3941 -1.2552 10 6 6.7026 -5.4938 -1.2902 11 1 7.0933 -5.6651 -0.2871 12 6 6.0175 -6.7654 -1.7947 13 6 7.8355 -5.1324 -2.2158 14 1 7.8329 -4.1809 -2.7267 15 6 8.8754 -6.0166 -2.4105 16 7 8.8782 -7.1755 -1.7887 17 14 10.2801 -5.5685 -3.5573 18 1 10.0412 -4.2188 -4.1288 19 1 11.5567 -5.5655 -2.7987 20 1 10.3594 -6.5647 -4.6558 21 6 2.6255 -3.5193 0.0005 22 6 1.7390 -2.4400 0.0007 23 8 0.5338 -2.6353 0.0017 24 7 2.2276 -1.1671 -0.0001 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.7701 2.1067 0.0006 29 1 4.4298 -5.3503 0.0905 30 1 5.6502 -4.2947 0.8418 31 1 5.1127 -4.4310 -2.0532 32 1 5.6267 -6.5941 -2.7977 33 1 6.7398 -7.5813 -1.8211 34 1 5.1980 -7.0267 -1.1251 35 1 9.6097 -7.7978 -1.9260 36 1 2.2560 -4.5341 0.0012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869304.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:39 Heat of formation + Delta-G solvation = 44.448305 kcal Electronic energy + Delta-G solvation = -20586.732729 eV Core-core repulsion = 17391.572146 eV Total energy + Delta-G solvation = -3195.160583 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.52276 -38.09786 -37.85089 -35.85311 -33.13318 -32.05221 -31.00293 -29.02705 -28.64144 -25.84259 -25.13748 -24.63007 -22.53597 -21.11819 -20.24222 -18.79988 -18.46078 -17.09894 -16.89607 -16.36503 -15.48302 -14.84070 -14.63429 -14.33163 -14.08294 -13.93357 -13.67070 -13.60513 -13.33832 -13.14707 -13.06727 -12.35943 -12.12154 -11.61700 -11.52385 -11.47688 -10.94753 -10.77763 -10.56651 -10.39148 -10.19702 -10.15746 -10.04648 -9.77117 -9.37755 -9.01228 -8.36090 -7.76139 -7.31240 -5.98222 -4.01002 0.03191 0.42215 1.12698 1.20460 1.78376 2.05816 3.33218 3.40825 3.44238 3.47513 3.98852 4.06820 4.45162 4.59205 4.67839 4.84326 5.00953 5.20661 5.26134 5.33848 5.35177 5.53266 5.74134 5.75366 5.91366 6.05071 6.21918 6.34285 6.66196 6.81789 7.04743 7.27819 7.57668 7.62644 7.71928 7.87486 8.23253 8.45426 8.56557 9.06386 9.64166 11.08978 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.024658 B = 0.003588 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.252533 B = 7802.924938 C = 8660.208033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.097 3.903 3 C -0.251 4.251 4 S 0.209 5.791 5 C 0.296 3.704 6 N -0.478 5.478 7 C 0.233 3.767 8 C 0.105 3.895 9 N -0.669 5.669 10 C 0.212 3.788 11 H 0.037 0.963 12 C -0.171 4.171 13 C -0.492 4.492 14 H 0.064 0.936 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.286 1.286 21 C -0.315 4.315 22 C 0.529 3.471 23 O -0.533 6.533 24 N -0.459 5.459 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.198 0.802 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.327 0.673 32 H 0.028 0.972 33 H 0.091 0.909 34 H 0.006 0.994 35 H 0.259 0.741 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.655 16.148 5.209 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.012 4.012 3 C -0.388 4.388 4 S 0.461 5.539 5 C -0.070 4.070 6 N -0.204 5.204 7 C 0.104 3.896 8 C -0.026 4.026 9 N -0.299 5.299 10 C 0.105 3.895 11 H 0.055 0.945 12 C -0.231 4.231 13 C -0.531 4.531 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.213 1.213 21 C -0.344 4.344 22 C 0.333 3.667 23 O -0.413 6.413 24 N -0.170 5.170 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.119 0.881 28 H 0.215 0.785 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.143 0.857 32 H 0.048 0.952 33 H 0.109 0.891 34 H 0.025 0.975 35 H 0.069 0.931 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.820 17.104 5.463 22.063 hybrid contribution -1.719 -1.586 -0.756 2.458 sum -14.539 15.518 4.707 21.780 Atomic orbital electron populations 1.20967 0.85639 1.05464 1.04406 1.19580 0.97249 0.83733 1.00622 1.24903 0.96858 1.02331 1.14697 1.85351 1.02077 0.87903 1.78534 1.26322 0.81304 1.02941 0.96475 1.68156 1.31689 0.97748 1.22783 1.21776 0.92831 0.91118 0.83909 1.20938 0.93598 0.90508 0.97521 1.60810 1.17724 1.50909 1.00497 1.19239 0.88862 0.83873 0.97556 0.94491 1.22463 0.98968 1.04010 0.97611 1.21170 1.03891 1.02480 1.25588 0.91765 1.24944 0.98284 0.95010 0.96324 1.69891 1.32337 1.08261 1.43312 0.86437 0.82017 0.78436 0.80489 1.19707 1.21129 1.21254 1.22660 0.92614 0.99780 1.19387 1.17294 0.90122 0.80174 0.79078 1.90896 1.14929 1.82824 1.52612 1.45235 1.07281 1.09127 1.55378 0.89748 0.89786 0.88052 0.78488 0.93397 0.88862 0.85690 0.95238 0.89056 0.97490 0.93114 0.82016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.40 36.01 0.34 -0.55 16 2 C 0.10 0.99 6.60 -81.89 -0.54 0.45 16 3 C -0.25 -1.88 10.79 29.05 0.31 -1.56 16 4 S 0.21 2.00 23.37 -107.50 -2.51 -0.51 16 5 C 0.30 4.13 8.32 -87.90 -0.73 3.40 16 6 N -0.48 -7.93 10.36 -9.01 -0.09 -8.02 16 7 C 0.23 3.84 6.33 -82.47 -0.52 3.31 16 8 C 0.10 1.84 5.89 -4.98 -0.03 1.81 16 9 N -0.67 -14.11 6.22 -109.22 -0.68 -14.79 16 10 C 0.21 5.22 2.57 -68.86 -0.18 5.04 16 11 H 0.04 0.99 7.80 -51.93 -0.40 0.58 16 12 C -0.17 -4.02 8.94 37.16 0.33 -3.69 16 13 C -0.49 -13.55 8.84 -34.44 -0.30 -13.86 16 14 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 15 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 16 N -0.90 -25.47 11.32 55.43 0.63 -24.85 16 17 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 C -0.32 -4.88 9.67 -39.18 -0.38 -5.26 16 22 C 0.53 8.33 7.50 -15.01 -0.11 8.22 16 23 O -0.53 -9.11 14.79 4.83 0.07 -9.04 16 24 N -0.46 -6.25 2.82 -62.10 -0.18 -6.42 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 27 H 0.10 1.13 5.92 -51.93 -0.31 0.82 16 28 H 0.20 0.70 8.06 -52.49 -0.42 0.27 16 29 H 0.05 0.79 7.21 -51.93 -0.37 0.41 16 30 H 0.09 1.67 8.05 -51.93 -0.42 1.25 16 31 H 0.33 6.67 8.47 -39.29 -0.33 6.33 16 32 H 0.03 0.67 8.13 -51.93 -0.42 0.24 16 33 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 34 H 0.01 0.13 7.45 -51.92 -0.39 -0.26 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.16 2.29 7.98 -52.49 -0.42 1.87 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -31.49 317.41 -9.10 -40.58 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.19 Total: 3.07 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -1.91 Total: -1.26 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.32 Total: -54.09 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.51 Total: -0.51 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.49 -9.10 -40.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869304.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.033 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds