Wall clock time and date at job start Tue Mar 31 2020 06:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30885 * 121.69302 * 2 1 4 4 S 1.75727 * 109.69837 * 180.02562 * 3 2 1 5 5 C 1.76444 * 90.71760 * 359.97438 * 4 3 2 6 6 N 1.33061 * 129.52198 * 180.28418 * 5 4 3 7 7 C 1.32422 * 121.90635 * 180.22077 * 6 5 4 8 8 C 1.50703 * 120.25840 * 179.75831 * 7 6 5 9 9 N 1.46899 * 109.47107 * 294.71892 * 8 7 6 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.46835 * 325.00273 * 10 9 8 12 12 C 1.52997 * 109.46874 * 85.00270 * 10 9 8 13 13 C 1.50699 * 109.46851 * 204.99994 * 10 9 8 14 14 H 1.07998 * 120.00472 * 0.02562 * 13 10 9 15 15 C 1.37879 * 119.99705 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99689 * 0.02562 * 15 13 10 17 17 Si 1.86794 * 120.00273 * 180.02562 * 15 13 10 18 18 H 1.48505 * 109.46883 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47106 * 119.99879 * 17 15 13 20 20 H 1.48500 * 109.47397 * 240.00177 * 17 15 13 21 21 C 1.37875 * 119.48009 * 359.47823 * 7 6 5 22 22 C 1.39662 * 118.80942 * 0.25815 * 21 7 6 23 23 O 1.22100 * 120.19358 * 180.02562 * 22 21 7 24 24 N 1.35365 * 109.14178 * 0.02562 * 5 4 3 25 25 H 1.09005 * 109.46995 * 269.97766 * 1 2 3 26 26 H 1.09002 * 109.46695 * 29.97790 * 1 2 3 27 27 H 1.09001 * 109.46944 * 149.97663 * 1 2 3 28 28 H 1.07997 * 125.15692 * 0.03946 * 3 2 1 29 29 H 1.09002 * 109.47152 * 174.71980 * 8 7 6 30 30 H 1.09001 * 109.46980 * 54.72080 * 8 7 6 31 31 H 1.00902 * 111.00582 * 303.95889 * 9 8 7 32 32 H 1.09007 * 109.47280 * 59.99720 * 12 10 9 33 33 H 1.08997 * 109.47489 * 179.97438 * 12 10 9 34 34 H 1.09007 * 109.47004 * 300.00081 * 12 10 9 35 35 H 0.97006 * 119.99890 * 179.97438 * 16 15 13 36 36 H 1.08001 * 120.59196 * 180.27324 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.1137 0.0000 4 16 3.9136 0.7485 -0.0007 5 6 3.5685 -0.9819 -0.0002 6 7 4.4095 -2.0130 0.0047 7 6 3.9808 -3.2659 -0.0001 8 6 4.9665 -4.4059 0.0003 9 7 5.7291 -4.3941 -1.2552 10 6 6.7026 -5.4938 -1.2902 11 1 7.0933 -5.6651 -0.2871 12 6 6.0175 -6.7654 -1.7947 13 6 7.8355 -5.1324 -2.2158 14 1 7.8329 -4.1809 -2.7267 15 6 8.8754 -6.0166 -2.4105 16 7 8.8782 -7.1755 -1.7887 17 14 10.2801 -5.5685 -3.5573 18 1 10.0412 -4.2188 -4.1288 19 1 11.5567 -5.5655 -2.7987 20 1 10.3594 -6.5647 -4.6558 21 6 2.6255 -3.5193 0.0005 22 6 1.7390 -2.4400 0.0007 23 8 0.5338 -2.6353 0.0017 24 7 2.2276 -1.1671 -0.0001 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.7701 2.1067 0.0006 29 1 4.4298 -5.3503 0.0905 30 1 5.6502 -4.2947 0.8418 31 1 5.1127 -4.4310 -2.0532 32 1 5.6267 -6.5941 -2.7977 33 1 6.7398 -7.5813 -1.8211 34 1 5.1980 -7.0267 -1.1251 35 1 9.6097 -7.7978 -1.9260 36 1 2.2560 -4.5341 0.0012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602869304.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:38 Heat of formation + Delta-G solvation = 23.645374 kcal Electronic energy + Delta-G solvation = -20587.634812 eV Core-core repulsion = 17391.572146 eV Total energy + Delta-G solvation = -3196.062666 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.55646 -39.23922 -39.00172 -37.49870 -34.73021 -33.38397 -32.25590 -30.51762 -29.54484 -27.34206 -27.07428 -25.74730 -23.72055 -22.19055 -22.10286 -19.73675 -19.60347 -18.50772 -17.94031 -17.89106 -16.87665 -16.63539 -15.80277 -15.68556 -15.31302 -15.02248 -14.84706 -14.82581 -14.45283 -14.36454 -13.98159 -13.80085 -13.61645 -13.41236 -12.85227 -12.77203 -12.59668 -12.38724 -12.27605 -12.14837 -11.91934 -11.33298 -11.24985 -11.12189 -10.95052 -10.46804 -10.41728 -9.02527 -8.72429 -8.07879 -6.18186 -1.03078 -0.50546 0.21347 0.43594 0.73101 1.10876 1.43905 1.45853 1.58220 2.28137 2.47182 2.88480 3.07728 3.20962 3.47435 3.85436 3.89194 4.15235 4.22766 4.27107 4.50256 4.55668 4.59075 4.64312 4.74076 4.85159 4.91723 5.01183 5.09110 5.14245 5.38229 5.40883 5.71624 5.81779 6.26382 6.44106 6.48866 6.59910 6.74341 6.94442 7.51166 8.97883 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.024658 B = 0.003588 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.252533 B = 7802.924938 C = 8660.208033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.056 3.944 3 C -0.209 4.209 4 S 0.262 5.738 5 C 0.275 3.725 6 N -0.516 5.516 7 C 0.234 3.766 8 C 0.110 3.890 9 N -0.674 5.674 10 C 0.217 3.783 11 H 0.011 0.989 12 C -0.159 4.159 13 C -0.513 4.513 14 H 0.053 0.947 15 C 0.010 3.990 16 N -0.922 5.922 17 Si 0.960 3.040 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.327 4.327 22 C 0.522 3.478 23 O -0.557 6.557 24 N -0.458 5.458 25 H 0.088 0.912 26 H 0.121 0.879 27 H 0.069 0.931 28 H 0.249 0.751 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.330 0.670 32 H 0.031 0.969 33 H 0.064 0.936 34 H 0.030 0.970 35 H 0.261 0.739 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.251 19.114 4.933 24.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.051 4.051 3 C -0.345 4.345 4 S 0.515 5.485 5 C -0.090 4.090 6 N -0.244 5.244 7 C 0.102 3.898 8 C -0.020 4.020 9 N -0.304 5.304 10 C 0.109 3.891 11 H 0.029 0.971 12 C -0.218 4.218 13 C -0.551 4.551 14 H 0.071 0.929 15 C -0.188 4.188 16 N -0.562 5.562 17 Si 0.786 3.214 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.206 1.206 21 C -0.357 4.357 22 C 0.327 3.673 23 O -0.439 6.439 24 N -0.168 5.168 25 H 0.106 0.894 26 H 0.140 0.860 27 H 0.087 0.913 28 H 0.265 0.735 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.147 0.853 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -13.436 20.135 5.193 24.757 hybrid contribution -1.552 -2.263 -0.623 2.814 sum -14.988 17.873 4.569 23.769 Atomic orbital electron populations 1.20960 0.84405 1.05689 1.04774 1.20051 0.98297 0.83192 1.03588 1.25572 0.95350 1.03499 1.10056 1.85329 1.03306 0.83932 1.75939 1.27032 0.81402 1.04525 0.96048 1.68074 1.33020 0.98259 1.25007 1.21440 0.92530 0.91075 0.84726 1.20850 0.93577 0.92030 0.95526 1.60611 1.18259 1.49431 1.02099 1.18988 0.89331 0.85329 0.95422 0.97129 1.22269 0.98857 1.02420 0.98272 1.21441 1.05344 1.02151 1.26198 0.92890 1.25681 1.00529 0.94936 0.97696 1.70008 1.33011 1.08939 1.44250 0.85475 0.79056 0.78208 0.78667 1.19447 1.20697 1.20642 1.22659 0.92360 1.00343 1.20320 1.17282 0.89781 0.81103 0.79172 1.90881 1.15528 1.83519 1.53961 1.45218 1.07587 1.09660 1.54313 0.89350 0.86027 0.91258 0.73480 0.92120 0.89663 0.85298 0.95029 0.91726 0.95092 0.92994 0.81533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 9.40 71.24 0.67 -0.77 16 2 C 0.06 1.00 6.60 41.80 0.28 1.27 16 3 C -0.21 -2.15 10.79 67.90 0.73 -1.41 16 4 S 0.26 4.16 23.37 -56.49 -1.32 2.84 16 5 C 0.27 7.39 8.32 179.40 1.49 8.89 16 6 N -0.52 -17.24 10.36 -182.42 -1.89 -19.13 16 7 C 0.23 7.86 6.33 42.38 0.27 8.13 16 8 C 0.11 3.98 5.89 85.56 0.50 4.48 16 9 N -0.67 -28.99 6.22 -499.46 -3.11 -32.10 16 10 C 0.22 10.96 2.57 44.17 0.11 11.07 16 11 H 0.01 0.59 7.80 -2.39 -0.02 0.58 16 12 C -0.16 -7.55 8.94 71.98 0.64 -6.90 16 13 C -0.51 -28.68 8.84 25.60 0.23 -28.46 16 14 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 15 C 0.01 0.54 5.30 84.65 0.45 0.99 16 16 N -0.92 -52.99 11.32 21.45 0.24 -52.74 16 17 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 C -0.33 -10.42 9.67 22.53 0.22 -10.20 16 22 C 0.52 16.69 7.50 84.34 0.63 17.32 16 23 O -0.56 -19.50 14.79 -5.64 -0.08 -19.59 16 24 N -0.46 -12.09 2.82 -467.53 -1.32 -13.41 16 25 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.12 0.77 8.10 -2.39 -0.02 0.75 16 27 H 0.07 1.51 5.92 -2.39 -0.01 1.50 16 28 H 0.25 -0.02 8.06 -2.91 -0.02 -0.04 16 29 H 0.06 2.02 7.21 -2.39 -0.02 2.00 16 30 H 0.09 3.18 8.05 -2.39 -0.02 3.16 16 31 H 0.33 13.69 8.47 -89.69 -0.76 12.93 16 32 H 0.03 1.44 8.13 -2.38 -0.02 1.42 16 33 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 34 H 0.03 1.27 7.45 -2.38 -0.02 1.26 16 35 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 36 H 0.17 4.90 7.98 -2.91 -0.02 4.87 16 Total: -1.00 -70.52 317.41 1.14 -69.38 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.36 Total: 14.06 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 6.23 Total: 4.41 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -6.07 Total: -117.38 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.08 Total: -19.59 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.32 Total: 2.84 kcal Total: -70.52 1.14 -69.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869304.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.027 kcal (2) G-P(sol) polarization free energy of solvation -70.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds