Wall clock time and date at job start Tue Mar 31 2020 06:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30702 * 122.11391 * 2 1 4 4 C 1.30559 * 115.91082 * 180.02562 * 3 2 1 5 5 C 1.47256 * 125.54164 * 180.02562 * 4 3 2 6 6 O 1.21619 * 119.99765 * 353.06403 * 5 4 3 7 7 N 1.34773 * 119.99642 * 172.78617 * 5 4 3 8 8 C 1.46492 * 120.00433 * 354.80213 * 7 5 4 9 9 C 1.50710 * 109.46694 * 84.43259 * 8 7 5 10 10 H 1.07997 * 120.00122 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99934 * 179.97438 * 9 8 7 12 12 N 1.31523 * 120.00037 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00151 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46892 * 60.00288 * 13 11 9 15 15 H 1.48494 * 109.47427 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47224 * 300.00952 * 13 11 9 17 17 C 1.46507 * 119.99678 * 174.80813 * 7 5 4 18 18 C 1.53003 * 109.46874 * 87.44429 * 17 7 5 19 19 C 1.47207 * 109.46489 * 179.97438 * 18 17 7 20 20 N 9.12455 * 142.23321 * 12.34549 * 2 1 3 21 21 S 1.76091 * 108.91219 * 0.26675 * 4 3 2 22 22 C 1.34240 * 122.10423 * 180.02562 * 2 1 3 23 23 C 1.50699 * 125.45728 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.47267 * 89.97169 * 1 2 3 25 25 H 1.08998 * 109.47000 * 209.97563 * 1 2 3 26 26 H 1.08997 * 109.46822 * 329.97495 * 1 2 3 27 27 H 1.08994 * 109.47582 * 204.43173 * 8 7 5 28 28 H 1.09000 * 109.47521 * 324.43975 * 8 7 5 29 29 H 0.96998 * 119.99986 * 179.97438 * 12 11 9 30 30 H 1.08999 * 109.46836 * 207.44258 * 17 7 5 31 31 H 1.09003 * 109.47020 * 327.44525 * 17 7 5 32 32 H 1.08999 * 109.47249 * 299.99576 * 18 17 7 33 33 H 1.09003 * 109.47218 * 60.00218 * 18 17 7 34 34 H 1.08996 * 109.46771 * 89.99574 * 23 22 2 35 35 H 1.09002 * 109.46946 * 210.00262 * 23 22 2 36 36 H 1.08999 * 109.46743 * 329.99757 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2018 1.1070 0.0000 4 6 3.4997 0.9660 -0.0005 5 6 4.4802 2.0647 -0.0001 6 8 4.1049 3.2146 -0.1264 7 7 5.7929 1.7963 0.1459 8 6 6.2347 0.4263 0.4178 9 6 6.3601 -0.3280 -0.8809 10 1 6.1338 0.1640 -1.8153 11 6 6.7649 -1.6461 -0.8762 12 7 7.0409 -2.2452 0.2617 13 14 6.9197 -2.5813 -2.4857 14 1 7.9127 -1.9043 -3.3580 15 1 7.3677 -3.9700 -2.2102 16 1 5.6014 -2.6131 -3.1686 17 6 6.7780 2.8748 0.0327 18 6 6.9664 3.5387 1.3982 19 6 7.9567 4.6219 1.2846 20 7 8.7200 5.4591 1.1948 21 16 3.8871 -0.7518 -0.0088 22 6 2.2204 -1.1371 -0.0005 23 6 1.6452 -2.5300 -0.0006 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8897 0.5142 27 1 7.2020 0.4493 0.9195 28 1 5.5052 -0.0705 1.0574 29 1 7.3253 -3.1725 0.2650 30 1 7.7291 2.4640 -0.3060 31 1 6.4254 3.6150 -0.6856 32 1 6.0153 3.9495 1.7369 33 1 7.3190 2.7985 2.1166 34 1 1.5061 -2.8655 -1.0282 35 1 2.3293 -3.2056 0.5129 36 1 0.6842 -2.5262 0.5137 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618390199.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:51 Heat of formation + Delta-G solvation = 13.224716 kcal Electronic energy + Delta-G solvation = -21108.988532 eV Core-core repulsion = 17912.473992 eV Total energy + Delta-G solvation = -3196.514539 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.12280 -40.20311 -37.88905 -36.89573 -34.90520 -33.99888 -32.62630 -30.52128 -29.19679 -27.66573 -25.72927 -25.16914 -24.19118 -20.97807 -19.31882 -19.00612 -18.75303 -18.37529 -17.77461 -16.91461 -16.42216 -16.24619 -15.88504 -15.50184 -15.19964 -14.59505 -14.44964 -14.29907 -14.04070 -13.77666 -13.66389 -13.64959 -13.59146 -13.46449 -13.17782 -12.94004 -12.76076 -12.69698 -12.64126 -12.18638 -11.85654 -11.78282 -11.33335 -10.98668 -10.74735 -10.25545 -9.97885 -9.59636 -9.26662 -8.24929 -6.29991 -0.42384 0.72828 1.26390 1.46422 1.48888 1.51837 1.54541 1.65447 1.79455 2.03593 2.36044 2.43340 3.09398 3.11229 3.46577 4.00385 4.11029 4.17134 4.22840 4.33487 4.54304 4.65910 4.73150 4.74369 4.85511 4.87203 4.99997 5.02099 5.09852 5.13397 5.16573 5.56354 5.59610 5.72334 5.90370 6.30334 6.55801 6.69803 6.92412 7.17871 7.30865 8.77831 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.011710 B = 0.007292 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.536622 B = 3838.862289 C = 5781.129206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.009 3.991 3 N -0.442 5.442 4 C -0.091 4.091 5 C 0.596 3.404 6 O -0.564 6.564 7 N -0.586 5.586 8 C 0.226 3.774 9 C -0.541 4.541 10 H 0.060 0.940 11 C 0.059 3.941 12 N -0.883 5.883 13 Si 0.923 3.077 14 H -0.274 1.274 15 H -0.277 1.277 16 H -0.271 1.271 17 C 0.128 3.872 18 C -0.033 4.033 19 C 0.246 3.754 20 N -0.488 5.488 21 S 0.372 5.628 22 C -0.325 4.325 23 C -0.071 4.071 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.276 0.724 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.138 0.862 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 -3.967 1.936 7.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 N -0.161 5.161 4 C -0.361 4.361 5 C 0.382 3.618 6 O -0.444 6.444 7 N -0.316 5.316 8 C 0.104 3.896 9 C -0.586 4.586 10 H 0.078 0.922 11 C -0.148 4.148 12 N -0.519 5.519 13 Si 0.749 3.251 14 H -0.199 1.199 15 H -0.201 1.201 16 H -0.196 1.196 17 C 0.004 3.996 18 C -0.074 4.074 19 C -0.071 4.071 20 N -0.167 5.167 21 S 0.637 5.363 22 C -0.448 4.448 23 C -0.129 4.129 24 H 0.093 0.907 25 H 0.113 0.887 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.155 0.845 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.314 -2.335 1.857 5.245 hybrid contribution -0.958 -0.696 -0.941 1.512 sum -5.272 -3.030 0.916 6.149 Atomic orbital electron populations 1.20370 0.86089 1.03521 1.02952 1.20451 0.99535 0.85970 1.07061 1.66424 1.04356 1.32476 1.12797 1.27011 0.94067 0.98368 1.16691 1.16920 0.82143 0.86106 0.76632 1.90706 1.79968 1.21458 1.52293 1.47872 1.04034 1.11008 1.68734 1.19677 0.97309 0.76127 0.96488 1.21546 1.46373 0.97025 0.93673 0.92209 1.25255 0.93506 0.97615 0.98376 1.69921 1.42462 1.13335 1.26147 0.86105 0.79145 0.78485 0.81376 1.19885 1.20136 1.19568 1.21331 0.93119 0.89291 0.95899 1.19723 0.95129 0.91953 1.00642 1.29159 0.92858 0.93315 0.91736 1.81235 1.12677 1.12703 1.10037 1.86944 0.94794 0.98344 1.56172 1.27498 1.06460 1.02408 1.08425 1.20297 1.01523 0.87765 1.03333 0.90718 0.88747 0.91666 0.91757 0.94205 0.91453 0.87596 0.90437 0.86668 0.84464 0.90039 0.91005 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.81 10.02 71.24 0.71 -1.10 16 2 C 0.01 0.33 6.68 41.81 0.28 0.61 16 3 N -0.44 -18.56 10.57 -178.24 -1.88 -20.45 16 4 C -0.09 -3.83 7.18 87.25 0.63 -3.20 16 5 C 0.60 24.73 7.60 86.61 0.66 25.39 16 6 O -0.56 -25.62 16.75 -4.09 -0.07 -25.69 16 7 N -0.59 -21.00 2.47 -830.23 -2.05 -23.05 16 8 C 0.23 8.66 4.72 85.64 0.40 9.06 16 9 C -0.54 -22.91 6.51 25.60 0.17 -22.74 16 10 H 0.06 2.67 7.81 -2.91 -0.02 2.65 16 11 C 0.06 2.53 4.82 84.65 0.41 2.94 16 12 N -0.88 -38.82 13.29 21.45 0.28 -38.53 16 13 Si 0.92 35.32 29.54 68.60 2.03 37.35 16 14 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 15 H -0.28 -10.35 7.11 99.48 0.71 -9.65 16 16 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 17 C 0.13 3.67 5.27 86.38 0.46 4.13 16 18 C -0.03 -0.77 6.02 28.79 0.17 -0.60 16 19 C 0.25 6.51 15.44 89.44 1.38 7.89 16 20 N -0.49 -15.47 18.54 20.01 0.37 -15.10 16 21 S 0.37 14.19 15.61 -56.49 -0.88 13.30 16 22 C -0.32 -10.75 6.36 24.77 0.16 -10.59 16 23 C -0.07 -1.69 10.04 71.24 0.72 -0.97 16 24 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.09 1.85 6.60 -2.39 -0.02 1.83 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 2.40 8.03 -2.39 -0.02 2.38 16 28 H 0.04 1.62 5.04 -18.18 -0.09 1.53 16 29 H 0.28 11.67 8.31 -92.71 -0.77 10.90 16 30 H 0.11 2.81 8.05 -2.39 -0.02 2.79 16 31 H 0.08 2.36 7.58 -2.39 -0.02 2.34 16 32 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.14 2.57 8.14 -2.39 -0.02 2.56 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.09 1.76 6.65 -2.39 -0.02 1.75 16 Total: -1.00 -57.29 325.65 4.96 -52.33 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.03 Total: 9.02 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 6.14 Total: 10.82 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -3.28 Total: -97.13 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.07 Total: -25.69 kcal Atomic # 14 Polarization: 35.32 SS G_CDS: 2.03 Total: 37.35 kcal Atomic # 16 Polarization: 14.19 SS G_CDS: -0.88 Total: 13.30 kcal Total: -57.29 4.96 -52.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618390199.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.552 kcal (2) G-P(sol) polarization free energy of solvation -57.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds