Wall clock time and date at job start Tue Mar 31 2020 07:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.46965 * 2 1 4 4 N 1.46500 * 109.47139 * 120.00384 * 2 1 3 5 5 C 1.46498 * 119.99782 * 285.48234 * 4 2 1 6 6 C 1.50693 * 109.47335 * 270.00264 * 5 4 2 7 7 H 1.08011 * 120.00103 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00275 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99838 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00074 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46787 * 90.00118 * 10 8 6 12 12 H 1.48496 * 109.47140 * 209.99790 * 10 8 6 13 13 H 1.48497 * 109.47444 * 330.00426 * 10 8 6 14 14 C 1.34772 * 119.99929 * 105.48566 * 4 2 1 15 15 O 1.21761 * 119.99909 * 172.79129 * 14 4 2 16 16 C 1.46267 * 120.00355 * 352.78970 * 14 4 2 17 17 C 1.33469 * 122.21060 * 225.62690 * 16 14 4 18 18 S 1.75716 * 109.85869 * 179.73774 * 17 16 14 19 19 C 1.75944 * 91.05777 * 0.23831 * 18 17 16 20 20 C 1.36289 * 142.80697 * 180.02562 * 19 18 17 21 21 N 1.33740 * 107.81588 * 180.02562 * 20 19 18 22 22 C 1.30356 * 109.46595 * 359.97438 * 21 20 19 23 23 N 1.35927 * 109.81329 * 0.02562 * 19 18 17 24 24 H 1.08997 * 109.46414 * 299.99883 * 1 2 3 25 25 H 1.09003 * 109.47158 * 59.99886 * 1 2 3 26 26 H 1.08994 * 109.47263 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46553 * 240.00058 * 2 1 3 28 28 H 1.09008 * 109.46964 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47771 * 299.99853 * 3 2 1 30 30 H 1.08997 * 109.47459 * 60.00756 * 3 2 1 31 31 H 1.08999 * 109.47223 * 30.00379 * 5 4 2 32 32 H 1.08997 * 109.47227 * 149.99976 * 5 4 2 33 33 H 0.97007 * 120.00040 * 180.02562 * 9 8 6 34 34 H 1.08005 * 125.07280 * 359.97438 * 17 16 14 35 35 H 1.07998 * 126.08871 * 0.02562 * 20 19 18 36 36 H 1.08003 * 125.57400 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.9433 -0.0336 2.5033 6 6 3.2083 0.7484 2.7460 7 1 3.9901 0.7557 2.0007 8 6 3.3679 1.4547 3.9193 9 7 2.4163 1.4455 4.8269 10 14 4.9365 2.4235 4.2203 11 1 4.7720 3.8053 3.7017 12 1 5.2164 2.4719 5.6778 13 1 6.0679 1.7637 3.5206 14 6 2.5368 -1.9305 1.0939 15 8 3.0616 -2.4526 2.0606 16 6 2.4691 -2.6490 -0.1784 17 6 2.0970 -3.9285 -0.2539 18 16 2.1232 -4.4599 -1.9286 19 6 2.6617 -2.8709 -2.4585 20 6 3.0013 -2.1532 -3.5662 21 7 3.3303 -0.9192 -3.1693 22 6 3.2122 -0.8335 -1.8739 23 7 2.7914 -2.0468 -1.3853 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.0888 0.6429 2.5213 32 1 1.8267 -0.7869 3.2824 33 1 2.5284 1.9427 5.6523 34 1 1.8174 -4.5443 0.5882 35 1 3.0041 -2.5164 -4.5833 36 1 3.4123 0.0471 -1.2816 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746190698.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:43 Heat of formation + Delta-G solvation = 92.941496 kcal Electronic energy + Delta-G solvation = -22078.290067 eV Core-core repulsion = 18885.232307 eV Total energy + Delta-G solvation = -3193.057760 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.06600 -39.47222 -36.63143 -35.97270 -32.98027 -31.18656 -30.48849 -29.82910 -27.91331 -26.74338 -24.77708 -23.13015 -22.10614 -21.91820 -20.89633 -19.30027 -18.00218 -16.90915 -16.58195 -16.07386 -15.42352 -15.09374 -14.81779 -14.50502 -14.45953 -14.06351 -13.60379 -13.33637 -13.20042 -12.64468 -12.29411 -12.04432 -11.96538 -11.73840 -11.53154 -11.28629 -11.09223 -10.98404 -10.77851 -10.61945 -10.47381 -10.22394 -9.91685 -9.70526 -9.53895 -9.35922 -8.51927 -7.93949 -7.48245 -6.13569 -4.17888 0.67970 1.00981 1.44938 1.82388 2.30014 2.84670 3.25166 3.31363 3.33156 3.36840 3.58854 4.35980 4.41760 4.51923 4.66603 5.05092 5.14406 5.21313 5.23434 5.37207 5.40735 5.56055 5.80588 5.88935 5.98661 6.12501 6.20333 6.25934 6.42936 6.78233 6.82939 6.91810 7.22672 7.31080 7.67954 7.80923 8.07097 8.10363 8.55850 8.85229 9.46756 10.94680 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.021707 B = 0.005375 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.592808 B = 5208.472371 C = 5507.834385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.086 3.914 3 C -0.156 4.156 4 N -0.573 5.573 5 C 0.248 3.752 6 C -0.523 4.523 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.896 3.104 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.561 3.439 15 O -0.511 6.511 16 C 0.053 3.947 17 C -0.163 4.163 18 S 0.153 5.847 19 C -0.096 4.096 20 C 0.017 3.983 21 N -0.449 5.449 22 C 0.196 3.804 23 N -0.398 5.398 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.198 0.802 35 H 0.182 0.818 36 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 -7.619 -14.438 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.018 4.018 3 C -0.213 4.213 4 N -0.304 5.304 5 C 0.129 3.871 6 C -0.561 4.561 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.724 3.276 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.342 3.658 15 O -0.387 6.387 16 C -0.060 4.060 17 C -0.302 4.302 18 S 0.412 5.588 19 C -0.321 4.321 20 C -0.141 4.141 21 N -0.164 5.164 22 C -0.083 4.083 23 N -0.080 5.080 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.215 0.785 35 H 0.199 0.801 36 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.878 -8.379 -14.765 17.414 hybrid contribution 0.841 1.209 1.549 2.137 sum -3.037 -7.170 -13.217 15.340 Atomic orbital electron populations 1.22136 0.95418 1.01595 1.02516 1.22242 0.95005 0.95489 0.89098 1.22098 1.01783 0.94506 1.02921 1.48416 1.57591 1.13528 1.10840 1.19370 0.97698 0.92858 0.77128 1.21335 1.02344 1.29286 1.03165 0.92343 1.24902 0.96706 0.96674 0.95623 1.69920 1.32942 1.42023 1.08336 0.86518 0.83471 0.80072 0.77546 1.20530 1.21081 1.19871 1.17010 0.80940 0.82434 0.85401 1.90906 1.42874 1.67511 1.37374 1.19588 1.06343 0.93987 0.86089 1.25578 1.06106 0.96144 1.02387 1.84335 1.73055 1.04843 0.96570 1.24586 1.16886 0.97489 0.93145 1.21786 1.06453 0.88790 0.97075 1.70230 1.18347 1.19179 1.08654 1.25526 1.03778 0.88596 0.90422 1.44523 1.47085 1.11539 1.04859 0.91504 0.91976 0.93240 0.88326 0.91859 0.92422 0.89673 0.94306 0.93888 0.92625 0.78527 0.80097 0.76210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.37 37.16 0.35 -1.97 16 2 C 0.09 1.41 2.24 -67.93 -0.15 1.26 16 3 C -0.16 -2.50 7.29 37.15 0.27 -2.23 16 4 N -0.57 -11.59 2.38 -169.15 -0.40 -11.99 16 5 C 0.25 6.05 4.35 -5.20 -0.02 6.03 16 6 C -0.52 -13.87 7.96 -34.44 -0.27 -14.15 16 7 H 0.06 1.56 7.41 -52.48 -0.39 1.17 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 10 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.56 11.46 7.35 -13.04 -0.10 11.37 16 15 O -0.51 -12.38 16.68 5.13 0.09 -12.30 16 16 C 0.05 0.87 5.89 -83.21 -0.49 0.38 16 17 C -0.16 -2.17 10.84 29.06 0.32 -1.86 16 18 S 0.15 1.67 23.33 -107.50 -2.51 -0.83 16 19 C -0.10 -1.30 7.81 -16.44 -0.13 -1.43 16 20 C 0.02 0.22 11.93 -17.42 -0.21 0.01 16 21 N -0.45 -6.68 11.21 -27.69 -0.31 -6.99 16 22 C 0.20 3.01 10.01 -88.30 -0.88 2.13 16 23 N -0.40 -6.16 2.53 -75.54 -0.19 -6.35 16 24 H 0.07 1.04 7.39 -51.93 -0.38 0.66 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.10 1.54 1.92 -80.58 -0.15 1.38 16 28 H 0.06 1.06 6.71 -51.92 -0.35 0.71 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.57 6.77 -51.93 -0.35 1.22 16 31 H 0.04 0.96 6.81 -51.93 -0.35 0.61 16 32 H 0.04 1.19 7.53 -51.93 -0.39 0.80 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.20 2.24 8.06 -52.48 -0.42 1.82 16 35 H 0.18 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.22 3.30 4.83 -52.48 -0.25 3.05 16 LS Contribution 309.00 15.07 4.66 4.66 Total: -1.00 -30.92 309.00 -8.25 -39.17 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.87 Total: 1.97 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.42 Total: 1.17 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.17 Total: -50.03 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.51 Total: -0.83 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.92 -8.25 -39.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746190698.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.108 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds