Wall clock time and date at job start Tue Mar 31 2020 07:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.46965 * 2 1 4 4 N 1.46500 * 109.47139 * 120.00384 * 2 1 3 5 5 C 1.46498 * 119.99782 * 285.48234 * 4 2 1 6 6 C 1.50693 * 109.47335 * 270.00264 * 5 4 2 7 7 H 1.08011 * 120.00103 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00275 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99838 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00074 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46787 * 90.00118 * 10 8 6 12 12 H 1.48496 * 109.47140 * 209.99790 * 10 8 6 13 13 H 1.48497 * 109.47444 * 330.00426 * 10 8 6 14 14 C 1.34772 * 119.99929 * 105.48566 * 4 2 1 15 15 O 1.21761 * 119.99909 * 172.79129 * 14 4 2 16 16 C 1.46267 * 120.00355 * 352.78970 * 14 4 2 17 17 C 1.33469 * 122.21060 * 225.62690 * 16 14 4 18 18 S 1.75716 * 109.85869 * 179.73774 * 17 16 14 19 19 C 1.75944 * 91.05777 * 0.23831 * 18 17 16 20 20 C 1.36289 * 142.80697 * 180.02562 * 19 18 17 21 21 N 1.33740 * 107.81588 * 180.02562 * 20 19 18 22 22 C 1.30356 * 109.46595 * 359.97438 * 21 20 19 23 23 N 1.35927 * 109.81329 * 0.02562 * 19 18 17 24 24 H 1.08997 * 109.46414 * 299.99883 * 1 2 3 25 25 H 1.09003 * 109.47158 * 59.99886 * 1 2 3 26 26 H 1.08994 * 109.47263 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46553 * 240.00058 * 2 1 3 28 28 H 1.09008 * 109.46964 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47771 * 299.99853 * 3 2 1 30 30 H 1.08997 * 109.47459 * 60.00756 * 3 2 1 31 31 H 1.08999 * 109.47223 * 30.00379 * 5 4 2 32 32 H 1.08997 * 109.47227 * 149.99976 * 5 4 2 33 33 H 0.97007 * 120.00040 * 180.02562 * 9 8 6 34 34 H 1.08005 * 125.07280 * 359.97438 * 17 16 14 35 35 H 1.07998 * 126.08871 * 0.02562 * 20 19 18 36 36 H 1.08003 * 125.57400 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.9433 -0.0336 2.5033 6 6 3.2083 0.7484 2.7460 7 1 3.9901 0.7557 2.0007 8 6 3.3679 1.4547 3.9193 9 7 2.4163 1.4455 4.8269 10 14 4.9365 2.4235 4.2203 11 1 4.7720 3.8053 3.7017 12 1 5.2164 2.4719 5.6778 13 1 6.0679 1.7637 3.5206 14 6 2.5368 -1.9305 1.0939 15 8 3.0616 -2.4526 2.0606 16 6 2.4691 -2.6490 -0.1784 17 6 2.0970 -3.9285 -0.2539 18 16 2.1232 -4.4599 -1.9286 19 6 2.6617 -2.8709 -2.4585 20 6 3.0013 -2.1532 -3.5662 21 7 3.3303 -0.9192 -3.1693 22 6 3.2122 -0.8335 -1.8739 23 7 2.7914 -2.0468 -1.3853 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.0888 0.6429 2.5213 32 1 1.8267 -0.7869 3.2824 33 1 2.5284 1.9427 5.6523 34 1 1.8174 -4.5443 0.5882 35 1 3.0041 -2.5164 -4.5833 36 1 3.4123 0.0471 -1.2816 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746190698.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:42 Heat of formation + Delta-G solvation = 74.310568 kcal Electronic energy + Delta-G solvation = -22079.097965 eV Core-core repulsion = 18885.232307 eV Total energy + Delta-G solvation = -3193.865658 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.17003 -40.99628 -38.06638 -37.28247 -34.99603 -32.76555 -31.63011 -30.97159 -29.67592 -28.05063 -26.33284 -24.63248 -23.45749 -23.19299 -22.13252 -20.49922 -19.43268 -18.67423 -18.06981 -17.41198 -16.98847 -16.36836 -16.22947 -15.95874 -15.92438 -15.34267 -14.88759 -14.67016 -14.40979 -14.30040 -13.87570 -13.50601 -13.43251 -13.08162 -12.95200 -12.82160 -12.58397 -12.56294 -12.41910 -12.19503 -11.91084 -11.64165 -11.55131 -11.23003 -10.95545 -10.64279 -10.53573 -9.64997 -8.46333 -8.23296 -6.35184 -0.46028 0.02323 0.37999 0.66055 1.12186 1.35906 1.38213 1.47792 1.73946 1.91347 2.07211 2.38829 3.06698 3.16433 3.39900 3.58277 3.85268 3.97552 4.09928 4.22445 4.26922 4.43495 4.64011 4.71634 4.73052 4.84405 4.88577 4.98889 5.08833 5.27446 5.30719 5.39868 5.51577 5.70925 5.77083 6.02399 6.45092 6.62213 6.69509 6.99429 7.33955 8.84133 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.021707 B = 0.005375 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.592808 B = 5208.472371 C = 5507.834385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 C -0.150 4.150 4 N -0.576 5.576 5 C 0.267 3.733 6 C -0.528 4.528 7 H 0.052 0.948 8 C 0.014 3.986 9 N -0.926 5.926 10 Si 0.959 3.041 11 H -0.264 1.264 12 H -0.283 1.283 13 H -0.276 1.276 14 C 0.559 3.441 15 O -0.565 6.565 16 C 0.013 3.987 17 C -0.145 4.145 18 S 0.250 5.750 19 C -0.117 4.117 20 C 0.020 3.980 21 N -0.458 5.458 22 C 0.170 3.830 23 N -0.400 5.400 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.051 0.949 27 H 0.118 0.882 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.032 0.968 32 H 0.001 0.999 33 H 0.266 0.734 34 H 0.214 0.786 35 H 0.217 0.783 36 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.156 -8.669 -17.251 19.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.022 4.022 3 C -0.207 4.207 4 N -0.306 5.306 5 C 0.146 3.854 6 C -0.566 4.566 7 H 0.070 0.930 8 C -0.186 4.186 9 N -0.566 5.566 10 Si 0.784 3.216 11 H -0.189 1.189 12 H -0.208 1.208 13 H -0.201 1.201 14 C 0.343 3.657 15 O -0.444 6.444 16 C -0.100 4.100 17 C -0.285 4.285 18 S 0.510 5.490 19 C -0.341 4.341 20 C -0.138 4.138 21 N -0.173 5.173 22 C -0.108 4.108 23 N -0.082 5.082 24 H 0.069 0.931 25 H 0.109 0.891 26 H 0.071 0.929 27 H 0.135 0.865 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.019 0.981 33 H 0.075 0.925 34 H 0.231 0.769 35 H 0.233 0.767 36 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -4.003 -9.418 -17.636 20.390 hybrid contribution 0.828 1.371 2.306 2.807 sum -3.175 -8.047 -15.330 17.603 Atomic orbital electron populations 1.22093 0.93864 1.01988 1.03120 1.22560 0.96251 0.95345 0.87999 1.22035 1.01025 0.94479 1.03157 1.48380 1.57688 1.14000 1.10509 1.18802 0.96718 0.91322 0.78546 1.21534 1.02763 1.29249 1.03088 0.92987 1.25703 0.99688 0.97721 0.95451 1.70028 1.34729 1.42991 1.08808 0.85547 0.79500 0.79260 0.77331 1.18874 1.20815 1.20136 1.17494 0.79522 0.82129 0.86555 1.90855 1.45061 1.68668 1.39836 1.18946 1.11374 0.94825 0.84851 1.26072 1.02052 0.95070 1.05316 1.84107 1.70500 1.01809 0.92616 1.25155 1.17235 0.98931 0.92793 1.22410 1.05111 0.87884 0.98404 1.70232 1.18382 1.20379 1.08273 1.25468 1.05674 0.88876 0.90814 1.44453 1.47026 1.11873 1.04850 0.93115 0.89060 0.92946 0.86488 0.93044 0.88934 0.92494 0.95019 0.98057 0.92454 0.76931 0.76657 0.76836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.36 9.37 71.98 0.67 -3.69 16 2 C 0.08 2.68 2.24 44.99 0.10 2.78 16 3 C -0.15 -4.86 7.29 71.98 0.52 -4.33 16 4 N -0.58 -24.29 2.38 -807.27 -1.92 -26.21 16 5 C 0.27 13.80 4.35 85.63 0.37 14.18 16 6 C -0.53 -29.21 7.96 25.60 0.20 -29.01 16 7 H 0.05 2.88 7.41 -2.91 -0.02 2.86 16 8 C 0.01 0.76 5.46 84.65 0.46 1.23 16 9 N -0.93 -54.43 13.29 21.45 0.28 -54.14 16 10 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 11 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 C 0.56 23.64 7.35 86.33 0.63 24.28 16 15 O -0.56 -28.76 16.68 -4.54 -0.08 -28.84 16 16 C 0.01 0.43 5.89 39.07 0.23 0.66 16 17 C -0.15 -3.54 10.84 66.74 0.72 -2.82 16 18 S 0.25 4.41 23.33 -56.49 -1.32 3.09 16 19 C -0.12 -2.80 7.81 83.60 0.65 -2.15 16 20 C 0.02 0.45 11.93 83.95 1.00 1.45 16 21 N -0.46 -12.69 11.21 -241.53 -2.71 -15.40 16 22 C 0.17 5.07 10.01 179.54 1.80 6.87 16 23 N -0.40 -11.82 2.53 -392.91 -0.99 -12.81 16 24 H 0.05 1.60 7.39 -2.39 -0.02 1.58 16 25 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.12 3.58 1.92 -29.30 -0.06 3.52 16 28 H 0.05 1.77 6.71 -2.38 -0.02 1.75 16 29 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.06 2.16 6.77 -2.39 -0.02 2.15 16 31 H 0.03 1.67 6.81 -2.39 -0.02 1.65 16 32 H 0.00 0.08 7.53 -2.39 -0.02 0.06 16 33 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 34 H 0.21 4.37 8.06 -2.91 -0.02 4.35 16 35 H 0.22 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.22 6.47 4.83 -2.91 -0.01 6.46 16 Total: -1.00 -70.04 309.00 3.74 -66.30 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.07 Total: 12.18 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 7.38 Total: 9.45 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -5.34 Total: -108.57 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.08 Total: -28.84 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.32 Total: 3.09 kcal Total: -70.04 3.74 -66.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746190698.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.611 kcal (2) G-P(sol) polarization free energy of solvation -70.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds