Wall clock time and date at job start Tue Mar 31 2020 07:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31162 * 1 3 3 Cl 1.73602 * 119.99522 * 2 1 4 4 C 1.50697 * 120.00534 * 179.97438 * 2 1 3 5 5 N 1.46502 * 109.47038 * 114.99768 * 4 2 1 6 6 C 1.34777 * 119.99559 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00046 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99686 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.46990 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.46934 * 305.97546 * 9 8 6 11 11 C 1.50700 * 109.47299 * 65.97885 * 9 8 6 12 12 H 1.08008 * 119.99531 * 26.90748 * 11 9 8 13 13 C 1.37869 * 120.00160 * 206.90965 * 11 9 8 14 14 N 1.31508 * 120.00032 * 353.27812 * 13 11 9 15 15 Si 1.86806 * 120.00073 * 173.54969 * 13 11 9 16 16 H 1.48497 * 109.46895 * 179.72442 * 15 13 11 17 17 H 1.48495 * 109.46957 * 299.72695 * 15 13 11 18 18 H 1.48501 * 109.46761 * 59.72686 * 15 13 11 19 19 C 1.50705 * 109.47056 * 185.97689 * 9 8 6 20 20 C 1.38237 * 120.00118 * 294.44966 * 19 9 8 21 21 C 1.38237 * 119.99818 * 179.78603 * 20 19 9 22 22 C 1.38236 * 120.00003 * 0.44191 * 21 20 19 23 23 C 1.38236 * 119.99991 * 359.81061 * 22 21 20 24 24 C 1.38228 * 119.99825 * 114.71859 * 19 9 8 25 25 H 1.07999 * 119.99419 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00118 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46916 * 355.00254 * 4 2 1 28 28 H 1.08995 * 109.46698 * 234.99988 * 4 2 1 29 29 H 0.97002 * 120.00062 * 0.02562 * 5 4 2 30 30 H 1.09000 * 109.47229 * 60.00363 * 8 6 5 31 31 H 1.09003 * 109.47630 * 300.00294 * 8 6 5 32 32 H 0.97008 * 120.00303 * 354.69126 * 14 13 11 33 33 H 1.08005 * 119.99967 * 359.97438 * 20 19 9 34 34 H 1.07999 * 119.99448 * 180.27078 * 21 20 19 35 35 H 1.07997 * 119.99991 * 179.83259 * 22 21 20 36 36 H 1.07993 * 119.99965 * 180.02562 * 23 22 21 37 37 H 1.07999 * 120.00249 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1795 1.5035 0.0000 4 6 2.0652 -1.3050 0.0006 5 7 2.8149 -1.4366 -1.2512 6 6 3.5680 -2.5319 -1.4736 7 8 3.6248 -3.4088 -0.6377 8 6 4.3396 -2.6670 -2.7610 9 6 5.1047 -3.9920 -2.7604 10 1 5.7178 -4.0571 -1.8617 11 6 4.1256 -5.1374 -2.7848 12 1 3.1472 -5.0022 -3.2218 13 6 4.4788 -6.3577 -2.2491 14 7 5.7107 -6.5633 -1.8373 15 14 3.2094 -7.7216 -2.1153 16 1 3.8382 -8.9259 -1.5157 17 1 2.0861 -7.2697 -1.2556 18 1 2.6949 -8.0534 -3.4682 19 6 5.9896 -4.0617 -3.9783 20 6 5.4266 -4.1139 -5.2398 21 6 6.2384 -4.1734 -6.3571 22 6 7.6131 -4.1898 -6.2125 23 6 8.1760 -4.1428 -4.9509 24 6 7.3642 -4.0790 -3.8338 25 1 -0.5399 -0.9354 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.3604 -2.1315 0.0905 28 1 2.7573 -1.3244 0.8424 29 1 2.7698 -0.7350 -1.9196 30 1 5.0443 -1.8402 -2.8507 31 1 3.6478 -2.6476 -3.6031 32 1 6.3895 -5.8852 -1.9803 33 1 4.3524 -4.1052 -5.3525 34 1 5.7985 -4.2098 -7.3427 35 1 8.2472 -4.2390 -7.0853 36 1 9.2499 -4.1552 -4.8380 37 1 7.8040 -4.0421 -2.8481 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793532425.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:53 Heat of formation + Delta-G solvation = -31.704043 kcal Electronic energy + Delta-G solvation = -20636.987619 eV Core-core repulsion = 17404.188364 eV Total energy + Delta-G solvation = -3232.799254 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.82454 -39.84651 -38.01711 -36.42293 -35.85886 -33.67623 -33.11935 -31.60460 -30.56018 -27.92684 -26.34830 -24.49992 -23.19040 -21.85352 -21.50702 -20.84545 -18.85954 -18.04103 -17.55062 -17.08807 -16.81478 -16.03533 -15.77986 -15.64323 -15.56694 -15.05397 -14.64432 -14.48309 -14.05789 -13.97081 -13.77805 -13.45028 -13.26024 -13.08341 -12.74003 -12.62162 -12.58857 -12.07252 -11.95024 -11.86728 -11.70919 -11.50063 -10.86586 -10.59272 -10.41870 -10.21215 -10.03191 -9.63749 -9.26598 -8.43255 -6.10314 0.68140 0.72706 0.78883 1.19817 1.49154 1.59342 1.75241 1.85973 2.41304 2.63559 3.11327 3.37548 3.48735 4.07045 4.13783 4.26495 4.28672 4.30210 4.44683 4.49106 4.57380 4.65396 4.68859 4.83415 4.87410 5.08227 5.12974 5.17382 5.23952 5.40937 5.43094 5.48098 5.75046 5.82568 5.95537 6.24656 6.31683 6.41274 6.63708 6.78828 7.46049 7.65336 8.96865 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.004636 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.547055 B = 6038.733099 C = 7482.309054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 Cl -0.088 7.088 4 C 0.161 3.839 5 N -0.725 5.725 6 C 0.514 3.486 7 O -0.558 6.558 8 C -0.111 4.111 9 C 0.074 3.926 10 H 0.004 0.996 11 C -0.556 4.556 12 H 0.041 0.959 13 C -0.026 4.026 14 N -0.944 5.944 15 Si 1.097 2.903 16 H -0.290 1.290 17 H -0.284 1.284 18 H -0.267 1.267 19 C -0.056 4.056 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.145 4.145 23 C -0.125 4.125 24 C -0.153 4.153 25 H 0.140 0.860 26 H 0.136 0.864 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.411 0.589 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.260 0.740 33 H 0.115 0.885 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.135 0.865 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.298 15.321 -3.854 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.134 4.134 3 Cl -0.060 7.060 4 C 0.037 3.963 5 N -0.380 5.380 6 C 0.302 3.698 7 O -0.434 6.434 8 C -0.151 4.151 9 C 0.055 3.945 10 H 0.022 0.978 11 C -0.594 4.594 12 H 0.059 0.941 13 C -0.224 4.224 14 N -0.582 5.582 15 Si 0.922 3.078 16 H -0.216 1.216 17 H -0.210 1.210 18 H -0.192 1.192 19 C -0.056 4.056 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.162 4.162 23 C -0.143 4.143 24 C -0.171 4.171 25 H 0.157 0.843 26 H 0.154 0.846 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.247 0.753 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.070 0.930 33 H 0.133 0.867 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.421 13.268 -2.679 15.437 hybrid contribution 0.524 1.695 -0.249 1.792 sum -6.897 14.963 -2.928 16.734 Atomic orbital electron populations 1.24474 0.92809 1.05632 0.93332 1.23160 0.94363 0.86521 1.09352 1.98381 1.78479 1.32026 1.97117 1.20309 0.95130 0.93363 0.87512 1.45926 1.49280 1.22124 1.20669 1.20973 0.79051 0.80693 0.89097 1.90739 1.63902 1.41021 1.47765 1.21571 0.99352 0.99285 0.94876 1.17697 0.93235 0.92899 0.90707 0.97791 1.21788 0.99592 0.97110 1.40945 0.94091 1.26748 1.00315 1.02041 0.93301 1.70817 1.02880 1.37892 1.46652 0.83204 0.73506 0.73816 0.77298 1.21589 1.21012 1.19178 1.20624 0.93797 0.94716 0.96489 1.21014 0.99881 1.01005 0.92077 1.21411 0.94083 1.00024 0.98752 1.21310 0.95285 1.02246 0.97392 1.21297 1.00032 1.00344 0.92666 1.21130 0.94016 1.03526 0.98472 0.84273 0.84618 0.89923 0.91838 0.75287 0.89063 0.88345 0.92966 0.86726 0.83941 0.83579 0.84759 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 14.05 67.62 0.95 -0.71 16 2 C -0.11 -2.02 5.87 25.48 0.15 -1.87 16 3 Cl -0.09 -1.71 28.99 -2.72 -0.08 -1.79 16 4 C 0.16 4.16 5.99 85.63 0.51 4.67 16 5 N -0.72 -21.00 5.55 -466.79 -2.59 -23.59 16 6 C 0.51 20.64 7.58 87.66 0.66 21.31 16 7 O -0.56 -28.85 15.02 -3.04 -0.05 -28.89 16 8 C -0.11 -4.31 4.95 29.85 0.15 -4.16 16 9 C 0.07 3.66 1.23 -12.28 -0.02 3.64 16 10 H 0.00 0.22 6.59 -2.39 -0.02 0.21 16 11 C -0.56 -30.94 6.35 25.60 0.16 -30.78 16 12 H 0.04 2.25 7.82 -2.91 -0.02 2.22 16 13 C -0.03 -1.53 5.45 84.65 0.46 -1.07 16 14 N -0.94 -60.41 13.56 21.44 0.29 -60.12 16 15 Si 1.10 53.72 29.91 68.60 2.05 55.77 16 16 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 17 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 C -0.06 -2.49 4.53 -19.87 -0.09 -2.58 16 20 C -0.12 -4.82 8.90 22.27 0.20 -4.62 16 21 C -0.12 -4.08 10.05 22.27 0.22 -3.86 16 22 C -0.14 -4.48 10.05 22.27 0.22 -4.26 16 23 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 24 C -0.15 -6.52 9.18 22.27 0.20 -6.32 16 25 H 0.14 1.57 7.84 -2.91 -0.02 1.54 16 26 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 27 H 0.08 2.21 7.80 -2.39 -0.02 2.19 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 29 H 0.41 9.42 8.46 -92.71 -0.78 8.63 16 30 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.10 3.44 7.96 -2.39 -0.02 3.42 16 32 H 0.26 16.66 6.24 -92.70 -0.58 16.08 16 33 H 0.11 4.43 7.85 -2.91 -0.02 4.41 16 34 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 35 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 37 H 0.09 4.19 7.95 -2.91 -0.02 4.17 16 Total: -1.00 -75.26 335.59 4.12 -71.14 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.48 Total: 22.25 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 4.02 Total: -34.76 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -2.30 Total: -83.71 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.05 Total: -28.89 kcal Atomic # 14 Polarization: 53.72 SS G_CDS: 2.05 Total: 55.77 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.79 kcal Total: -75.26 4.12 -71.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793532425.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.434 kcal (2) G-P(sol) polarization free energy of solvation -75.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds