Wall clock time and date at job start Tue Mar 31 2020 07:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31159 * 1 3 3 Cl 1.73600 * 119.99491 * 2 1 4 4 C 1.50696 * 120.00272 * 179.97438 * 2 1 3 5 5 N 1.46506 * 109.47028 * 115.00028 * 4 2 1 6 6 C 1.34769 * 119.99929 * 179.97438 * 5 4 2 7 7 O 1.21284 * 120.00091 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00156 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47348 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47385 * 53.81101 * 9 8 6 11 11 C 1.50707 * 109.46800 * 293.80633 * 9 8 6 12 12 H 1.07996 * 119.99939 * 324.79144 * 11 9 8 13 13 C 1.37876 * 119.99516 * 144.79724 * 11 9 8 14 14 N 1.31517 * 119.99498 * 181.40280 * 13 11 9 15 15 Si 1.86799 * 120.00347 * 1.40222 * 13 11 9 16 16 H 1.48496 * 109.47059 * 267.09616 * 15 13 11 17 17 H 1.48498 * 109.46945 * 27.10055 * 15 13 11 18 18 H 1.48502 * 109.46861 * 147.09689 * 15 13 11 19 19 C 1.50699 * 109.46966 * 173.80920 * 9 8 6 20 20 C 1.38237 * 120.00135 * 66.64777 * 19 9 8 21 21 C 1.38237 * 120.00124 * 179.80917 * 20 19 9 22 22 C 1.38241 * 119.99834 * 0.39586 * 21 20 19 23 23 C 1.38239 * 119.99727 * 359.85702 * 22 21 20 24 24 C 1.38229 * 120.00171 * 359.95425 * 23 22 21 25 25 H 1.08007 * 119.99862 * 180.02562 * 1 2 3 26 26 H 1.07992 * 120.00880 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47050 * 355.00315 * 4 2 1 28 28 H 1.08996 * 109.47030 * 234.99960 * 4 2 1 29 29 H 0.97005 * 119.99423 * 0.02562 * 5 4 2 30 30 H 1.09004 * 109.46561 * 60.00018 * 8 6 5 31 31 H 1.09003 * 109.46933 * 300.01124 * 8 6 5 32 32 H 0.96996 * 119.99967 * 179.97438 * 14 13 11 33 33 H 1.07999 * 120.00352 * 359.97438 * 20 19 9 34 34 H 1.07995 * 120.00255 * 180.23001 * 21 20 19 35 35 H 1.07995 * 119.99860 * 179.82910 * 22 21 20 36 36 H 1.08003 * 119.99758 * 179.97438 * 23 22 21 37 37 H 1.08004 * 119.99873 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1795 1.5035 0.0000 4 6 2.0651 -1.3050 0.0006 5 7 2.8148 -1.4366 -1.2512 6 6 3.5679 -2.5319 -1.4737 7 8 3.6247 -3.4088 -0.6378 8 6 4.3387 -2.6675 -2.7616 9 6 5.1039 -3.9924 -2.7610 10 1 4.4127 -4.8110 -2.5608 11 6 6.1658 -3.9586 -1.6922 12 1 6.6826 -3.0358 -1.4734 13 6 6.4777 -5.1058 -0.9938 14 7 7.3848 -5.0701 -0.0423 15 14 5.6117 -6.7105 -1.3992 16 1 4.4257 -6.8689 -0.5197 17 1 5.1767 -6.6933 -2.8189 18 1 6.5447 -7.8451 -1.1811 19 6 5.7513 -4.1992 -4.1060 20 6 6.7696 -3.3606 -4.5192 21 6 7.3662 -3.5527 -5.7513 22 6 6.9388 -4.5784 -6.5738 23 6 5.9168 -5.4137 -6.1628 24 6 5.3230 -5.2239 -4.9290 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5401 0.9352 -0.0004 27 1 1.3602 -2.1315 0.0905 28 1 2.7572 -1.3245 0.8424 29 1 2.7697 -0.7349 -1.9195 30 1 5.0432 -1.8406 -2.8521 31 1 3.6462 -2.6485 -3.6032 32 1 7.6040 -5.8771 0.4493 33 1 7.1011 -2.5570 -3.8783 34 1 8.1643 -2.9000 -6.0726 35 1 7.4029 -4.7268 -7.5375 36 1 5.5826 -6.2147 -6.8055 37 1 4.5249 -5.8768 -4.6078 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793532429.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:57 Heat of formation + Delta-G solvation = -5.624024 kcal Electronic energy + Delta-G solvation = -20664.538488 eV Core-core repulsion = 17432.870149 eV Total energy + Delta-G solvation = -3231.668340 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.28421 -38.40870 -37.08399 -35.12723 -34.00861 -32.46317 -31.62065 -30.19905 -29.12529 -26.86581 -25.12576 -22.56781 -21.84677 -20.52005 -20.19225 -19.10418 -16.92510 -16.81361 -16.28829 -15.76065 -15.38220 -14.66349 -14.52078 -14.10872 -13.98586 -13.79998 -13.05610 -12.89047 -12.72126 -12.54640 -12.34111 -12.28158 -11.94594 -11.83626 -11.64517 -11.03189 -10.98188 -10.74086 -10.52181 -10.34832 -9.87539 -9.60705 -9.56705 -9.15310 -8.93652 -8.68672 -8.41027 -8.19172 -7.80597 -5.96265 -3.93834 1.55066 2.02440 2.10674 2.15538 3.43249 3.44520 3.49050 3.51473 3.71573 4.39459 4.53266 4.59903 5.26509 5.30918 5.36802 5.51981 5.52766 5.57056 5.69716 5.79726 5.84495 5.94385 5.99222 6.03927 6.10447 6.25929 6.33796 6.61877 6.69810 6.76132 6.84377 7.02519 7.15245 7.27971 7.58746 7.74045 7.84065 7.96950 8.54731 8.95274 9.02899 9.68452 11.16745 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.004548 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.259841 B = 6154.749948 C = 7080.163039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.084 4.084 3 Cl -0.082 7.082 4 C 0.159 3.841 5 N -0.745 5.745 6 C 0.516 3.484 7 O -0.500 6.500 8 C -0.116 4.116 9 C 0.056 3.944 10 H 0.050 0.950 11 C -0.489 4.489 12 H 0.071 0.929 13 C 0.085 3.915 14 N -0.899 5.899 15 Si 0.870 3.130 16 H -0.277 1.277 17 H -0.255 1.255 18 H -0.295 1.295 19 C -0.040 4.040 20 C -0.100 4.100 21 C -0.128 4.128 22 C -0.149 4.149 23 C -0.128 4.128 24 C -0.135 4.135 25 H 0.126 0.874 26 H 0.114 0.886 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.396 0.604 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.261 0.739 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.844 9.414 -6.497 16.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 Cl -0.054 7.054 4 C 0.035 3.965 5 N -0.401 5.401 6 C 0.303 3.697 7 O -0.371 6.371 8 C -0.156 4.156 9 C 0.037 3.963 10 H 0.068 0.932 11 C -0.526 4.526 12 H 0.089 0.911 13 C -0.117 4.117 14 N -0.537 5.537 15 Si 0.698 3.302 16 H -0.203 1.203 17 H -0.180 1.180 18 H -0.222 1.222 19 C -0.040 4.040 20 C -0.118 4.118 21 C -0.146 4.146 22 C -0.167 4.167 23 C -0.146 4.146 24 C -0.153 4.153 25 H 0.144 0.856 26 H 0.132 0.868 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.229 0.771 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.598 8.734 -5.711 15.602 hybrid contribution -0.233 -0.438 -0.302 0.581 sum -11.831 8.296 -6.014 15.651 Atomic orbital electron populations 1.24126 0.93691 1.03946 0.98125 1.23539 0.94098 0.88124 1.05294 1.98390 1.78109 1.32062 1.96831 1.20310 0.95451 0.91331 0.89371 1.46134 1.50747 1.23548 1.19705 1.20864 0.78332 0.80839 0.89698 1.90753 1.60624 1.39800 1.45940 1.21667 0.98484 1.02291 0.93166 1.18131 0.95290 0.92676 0.90198 0.93212 1.20600 1.18941 0.97331 1.15687 0.91104 1.24887 0.94113 0.98696 0.94000 1.69888 1.32464 1.28693 1.22623 0.86957 0.79812 0.83537 0.79903 1.20265 1.17957 1.22168 1.20758 0.95080 0.93122 0.95085 1.20987 0.95852 1.00035 0.94935 1.21059 0.99947 0.98399 0.95221 1.20864 0.98961 0.97289 0.99627 1.20961 0.97590 0.99376 0.96653 1.21145 1.00943 0.99075 0.94147 0.85618 0.86782 0.89796 0.89964 0.77055 0.89636 0.91289 0.92896 0.86171 0.87202 0.87460 0.87425 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 14.05 28.97 0.41 -0.86 16 2 C -0.08 -0.86 5.87 -36.07 -0.21 -1.07 16 3 Cl -0.08 -0.89 28.99 -51.86 -1.50 -2.40 16 4 C 0.16 2.08 5.99 -5.19 -0.03 2.05 16 5 N -0.75 -10.77 5.55 -61.47 -0.34 -11.11 16 6 C 0.52 9.89 7.58 -10.99 -0.08 9.81 16 7 O -0.50 -12.08 15.02 5.55 0.08 -12.00 16 8 C -0.12 -2.12 4.96 -27.88 -0.14 -2.26 16 9 C 0.06 1.27 1.17 -92.92 -0.11 1.17 16 10 H 0.05 1.20 4.94 -51.93 -0.26 0.94 16 11 C -0.49 -13.35 6.88 -34.44 -0.24 -13.58 16 12 H 0.07 2.10 8.06 -52.49 -0.42 1.67 16 13 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 14 N -0.90 -28.17 13.96 55.43 0.77 -27.39 16 15 Si 0.87 22.57 27.00 -169.99 -4.59 17.98 16 16 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 17 H -0.26 -6.09 4.72 56.52 0.27 -5.82 16 18 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 19 C -0.04 -0.83 4.65 -104.62 -0.49 -1.31 16 20 C -0.10 -1.94 8.93 -39.58 -0.35 -2.29 16 21 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 22 C -0.15 -2.42 10.05 -39.58 -0.40 -2.82 16 23 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 24 C -0.13 -2.62 8.70 -39.59 -0.34 -2.96 16 25 H 0.13 0.84 7.84 -52.48 -0.41 0.43 16 26 H 0.11 0.75 8.06 -52.49 -0.42 0.33 16 27 H 0.08 1.06 7.80 -51.93 -0.40 0.66 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.40 4.69 8.46 -40.82 -0.35 4.34 16 30 H 0.09 1.48 8.05 -51.93 -0.42 1.06 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 33 H 0.12 2.32 7.87 -52.49 -0.41 1.91 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 37 H 0.11 2.11 7.12 -52.48 -0.37 1.73 16 LS Contribution 330.80 15.07 4.99 4.99 Total: -1.00 -33.31 330.80 -8.32 -41.63 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.85 Total: 5.18 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -2.88 Total: -16.88 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.43 Total: -38.50 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.08 Total: -12.00 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.59 Total: 17.98 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.31 -8.32 -41.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793532429.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.009 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds