Wall clock time and date at job start Tue Mar 31 2020 07:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31159 * 1 3 3 Cl 1.73600 * 119.99491 * 2 1 4 4 C 1.50696 * 120.00272 * 179.97438 * 2 1 3 5 5 N 1.46506 * 109.47028 * 115.00028 * 4 2 1 6 6 C 1.34769 * 119.99929 * 179.97438 * 5 4 2 7 7 O 1.21284 * 120.00091 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00156 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47348 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47385 * 53.81101 * 9 8 6 11 11 C 1.50707 * 109.46800 * 293.80633 * 9 8 6 12 12 H 1.07996 * 119.99939 * 324.79144 * 11 9 8 13 13 C 1.37876 * 119.99516 * 144.79724 * 11 9 8 14 14 N 1.31517 * 119.99498 * 181.40280 * 13 11 9 15 15 Si 1.86799 * 120.00347 * 1.40222 * 13 11 9 16 16 H 1.48496 * 109.47059 * 267.09616 * 15 13 11 17 17 H 1.48498 * 109.46945 * 27.10055 * 15 13 11 18 18 H 1.48502 * 109.46861 * 147.09689 * 15 13 11 19 19 C 1.50699 * 109.46966 * 173.80920 * 9 8 6 20 20 C 1.38237 * 120.00135 * 66.64777 * 19 9 8 21 21 C 1.38237 * 120.00124 * 179.80917 * 20 19 9 22 22 C 1.38241 * 119.99834 * 0.39586 * 21 20 19 23 23 C 1.38239 * 119.99727 * 359.85702 * 22 21 20 24 24 C 1.38229 * 120.00171 * 359.95425 * 23 22 21 25 25 H 1.08007 * 119.99862 * 180.02562 * 1 2 3 26 26 H 1.07992 * 120.00880 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47050 * 355.00315 * 4 2 1 28 28 H 1.08996 * 109.47030 * 234.99960 * 4 2 1 29 29 H 0.97005 * 119.99423 * 0.02562 * 5 4 2 30 30 H 1.09004 * 109.46561 * 60.00018 * 8 6 5 31 31 H 1.09003 * 109.46933 * 300.01124 * 8 6 5 32 32 H 0.96996 * 119.99967 * 179.97438 * 14 13 11 33 33 H 1.07999 * 120.00352 * 359.97438 * 20 19 9 34 34 H 1.07995 * 120.00255 * 180.23001 * 21 20 19 35 35 H 1.07995 * 119.99860 * 179.82910 * 22 21 20 36 36 H 1.08003 * 119.99758 * 179.97438 * 23 22 21 37 37 H 1.08004 * 119.99873 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1795 1.5035 0.0000 4 6 2.0651 -1.3050 0.0006 5 7 2.8148 -1.4366 -1.2512 6 6 3.5679 -2.5319 -1.4737 7 8 3.6247 -3.4088 -0.6378 8 6 4.3387 -2.6675 -2.7616 9 6 5.1039 -3.9924 -2.7610 10 1 4.4127 -4.8110 -2.5608 11 6 6.1658 -3.9586 -1.6922 12 1 6.6826 -3.0358 -1.4734 13 6 6.4777 -5.1058 -0.9938 14 7 7.3848 -5.0701 -0.0423 15 14 5.6117 -6.7105 -1.3992 16 1 4.4257 -6.8689 -0.5197 17 1 5.1767 -6.6933 -2.8189 18 1 6.5447 -7.8451 -1.1811 19 6 5.7513 -4.1992 -4.1060 20 6 6.7696 -3.3606 -4.5192 21 6 7.3662 -3.5527 -5.7513 22 6 6.9388 -4.5784 -6.5738 23 6 5.9168 -5.4137 -6.1628 24 6 5.3230 -5.2239 -4.9290 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5401 0.9352 -0.0004 27 1 1.3602 -2.1315 0.0905 28 1 2.7572 -1.3245 0.8424 29 1 2.7697 -0.7349 -1.9195 30 1 5.0432 -1.8406 -2.8521 31 1 3.6462 -2.6485 -3.6032 32 1 7.6040 -5.8771 0.4493 33 1 7.1011 -2.5570 -3.8783 34 1 8.1643 -2.9000 -6.0726 35 1 7.4029 -4.7268 -7.5375 36 1 5.5826 -6.2147 -6.8055 37 1 4.5249 -5.8768 -4.6078 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793532429.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:57 Heat of formation + Delta-G solvation = -27.216817 kcal Electronic energy + Delta-G solvation = -20665.474822 eV Core-core repulsion = 17432.870149 eV Total energy + Delta-G solvation = -3232.604673 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.78989 -39.81954 -37.98858 -36.32262 -35.68509 -33.79419 -33.41339 -31.58371 -30.52513 -28.39155 -26.65265 -24.18177 -23.26110 -21.74557 -21.36704 -20.58676 -18.99258 -18.14646 -17.51822 -17.08629 -16.68885 -16.26399 -16.05427 -15.54371 -15.33072 -15.01412 -14.77693 -14.34954 -14.18527 -14.03226 -13.78569 -13.48497 -13.29654 -13.14501 -12.85849 -12.68200 -12.61386 -12.04966 -11.89297 -11.81967 -11.77033 -11.47735 -11.03945 -10.78353 -10.57912 -10.20968 -9.98905 -9.59303 -9.28056 -8.20360 -6.17685 0.70287 0.74236 0.81259 1.23689 1.33805 1.38247 1.43995 1.90950 2.43074 2.46725 3.10495 3.25980 3.51794 4.09446 4.15809 4.29506 4.32188 4.33829 4.47759 4.50790 4.60455 4.69346 4.71267 4.87499 4.88846 5.10179 5.15509 5.19695 5.21820 5.40099 5.42840 5.51960 5.70545 5.79031 5.84895 6.05062 6.35040 6.38700 6.68714 6.82220 7.46675 7.50563 8.96758 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.004548 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.259841 B = 6154.749948 C = 7080.163039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.108 4.108 3 Cl -0.092 7.092 4 C 0.160 3.840 5 N -0.725 5.725 6 C 0.513 3.487 7 O -0.560 6.560 8 C -0.112 4.112 9 C 0.057 3.943 10 H 0.035 0.965 11 C -0.465 4.465 12 H 0.033 0.967 13 C 0.021 3.979 14 N -0.955 5.955 15 Si 0.921 3.079 16 H -0.289 1.289 17 H -0.222 1.222 18 H -0.298 1.298 19 C -0.063 4.063 20 C -0.119 4.119 21 C -0.127 4.127 22 C -0.140 4.140 23 C -0.125 4.125 24 C -0.150 4.150 25 H 0.143 0.857 26 H 0.134 0.866 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.411 0.589 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.257 0.743 33 H 0.107 0.893 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.657 9.788 -9.879 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.135 4.135 3 Cl -0.064 7.064 4 C 0.036 3.964 5 N -0.380 5.380 6 C 0.301 3.699 7 O -0.436 6.436 8 C -0.152 4.152 9 C 0.038 3.962 10 H 0.053 0.947 11 C -0.503 4.503 12 H 0.051 0.949 13 C -0.175 4.175 14 N -0.597 5.597 15 Si 0.748 3.252 16 H -0.216 1.216 17 H -0.145 1.145 18 H -0.225 1.225 19 C -0.064 4.064 20 C -0.137 4.137 21 C -0.145 4.145 22 C -0.158 4.158 23 C -0.142 4.142 24 C -0.168 4.168 25 H 0.161 0.839 26 H 0.152 0.848 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.248 0.752 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.158 0.842 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.450 9.172 -9.152 18.676 hybrid contribution 0.257 -0.395 0.652 0.804 sum -13.193 8.777 -8.501 17.982 Atomic orbital electron populations 1.24465 0.92621 1.05700 0.93289 1.23191 0.94411 0.86491 1.09407 1.98386 1.78597 1.32265 1.97119 1.20309 0.95031 0.93513 0.87528 1.45916 1.49195 1.22361 1.20555 1.21052 0.78391 0.81158 0.89343 1.90733 1.63019 1.42180 1.47710 1.21601 0.99047 1.00307 0.94287 1.18009 0.93832 0.94346 0.90006 0.94697 1.20826 1.18295 0.95136 1.16033 0.94918 1.25654 0.95221 1.02194 0.94451 1.70040 1.35389 1.29254 1.25013 0.86140 0.78070 0.79779 0.81258 1.21607 1.14455 1.22535 1.20485 0.96261 0.94893 0.94729 1.21010 0.96340 1.00089 0.96245 1.21387 1.00014 0.98980 0.94075 1.21334 0.97948 0.95800 1.00713 1.21338 0.97042 1.00012 0.95854 1.21263 1.01613 0.98640 0.95317 0.83919 0.84755 0.89250 0.92618 0.75230 0.88840 0.87439 0.93397 0.87472 0.84502 0.83660 0.84181 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 14.05 67.62 0.95 -0.61 16 2 C -0.11 -2.06 5.87 25.49 0.15 -1.91 16 3 Cl -0.09 -1.91 28.99 -2.72 -0.08 -1.99 16 4 C 0.16 4.16 5.99 85.63 0.51 4.67 16 5 N -0.73 -20.68 5.55 -466.79 -2.59 -23.27 16 6 C 0.51 19.93 7.58 87.66 0.66 20.59 16 7 O -0.56 -28.15 15.02 -3.04 -0.05 -28.19 16 8 C -0.11 -4.09 4.96 29.85 0.15 -3.94 16 9 C 0.06 2.61 1.17 -12.29 -0.01 2.60 16 10 H 0.03 1.68 4.94 -2.39 -0.01 1.67 16 11 C -0.47 -26.49 6.88 25.60 0.18 -26.31 16 12 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 13 C 0.02 1.27 5.47 84.65 0.46 1.73 16 14 N -0.96 -63.17 13.96 21.45 0.30 -62.87 16 15 Si 0.92 47.97 27.00 68.60 1.85 49.82 16 16 H -0.29 -15.52 7.11 99.48 0.71 -14.81 16 17 H -0.22 -10.20 4.72 99.48 0.47 -9.73 16 18 H -0.30 -15.50 7.11 99.48 0.71 -14.79 16 19 C -0.06 -2.55 4.65 -19.87 -0.09 -2.65 16 20 C -0.12 -4.48 8.93 22.27 0.20 -4.28 16 21 C -0.13 -3.90 10.05 22.27 0.22 -3.68 16 22 C -0.14 -3.87 10.05 22.27 0.22 -3.65 16 23 C -0.12 -3.70 10.05 22.27 0.22 -3.48 16 24 C -0.15 -5.44 8.70 22.27 0.19 -5.25 16 25 H 0.14 1.38 7.84 -2.91 -0.02 1.36 16 26 H 0.13 1.25 8.06 -2.91 -0.02 1.22 16 27 H 0.09 2.23 7.80 -2.39 -0.02 2.21 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.41 9.19 8.46 -92.70 -0.78 8.40 16 30 H 0.09 3.23 8.05 -2.38 -0.02 3.21 16 31 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 32 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 33 H 0.11 4.21 7.87 -2.91 -0.02 4.19 16 34 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 35 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 36 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.11 3.95 7.12 -2.91 -0.02 3.93 16 Total: -1.00 -77.47 330.80 3.51 -73.96 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.06 Total: 18.70 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 4.02 Total: -26.16 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -2.29 Total: -86.15 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.05 Total: -28.19 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 1.85 Total: 49.82 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.08 Total: -1.99 kcal Total: -77.47 3.51 -73.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793532429.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.742 kcal (2) G-P(sol) polarization free energy of solvation -77.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds