Wall clock time and date at job start Tue Mar 31 2020 07:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47535 * 20.42115 * 3 2 1 5 5 C 1.36932 * 119.99636 * 264.22992 * 4 3 2 6 6 H 1.08006 * 119.99950 * 196.86617 * 5 4 3 7 7 C 1.38815 * 120.00544 * 16.86434 * 5 4 3 8 8 N 1.31618 * 119.99684 * 22.15086 * 7 5 4 9 9 Si 1.86793 * 120.00232 * 202.15138 * 7 5 4 10 10 H 1.48497 * 109.47133 * 89.99744 * 9 7 5 11 11 H 1.48500 * 109.47136 * 209.99815 * 9 7 5 12 12 H 1.48500 * 109.47091 * 329.99857 * 9 7 5 13 13 C 1.46501 * 120.00248 * 84.22136 * 4 3 2 14 14 C 1.53000 * 109.47365 * 270.00766 * 13 4 3 15 15 C 1.52994 * 109.47014 * 180.02562 * 14 13 4 16 16 O 1.42897 * 109.47351 * 179.97438 * 15 14 13 17 17 C 1.35903 * 117.00364 * 179.97438 * 16 15 14 18 18 C 1.38760 * 120.04806 * 359.72535 * 17 16 15 19 19 C 1.38125 * 119.96839 * 179.74564 * 18 17 16 20 20 C 1.38268 * 120.07114 * 0.55340 * 19 18 17 21 21 C 1.38369 * 120.09650 * 359.69503 * 20 19 18 22 22 Cl 1.73593 * 119.98795 * 180.02562 * 21 20 19 23 23 C 1.38284 * 120.02566 * 0.03138 * 21 20 19 24 24 H 4.40643 * 5.51415 * 180.02562 * 4 1 2 25 25 H 1.08996 * 109.47074 * 260.41528 * 3 2 1 26 26 H 1.09004 * 109.47034 * 140.41575 * 3 2 1 27 27 H 0.97003 * 120.00031 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47185 * 150.00140 * 13 4 3 29 29 H 1.09000 * 109.46812 * 30.00716 * 13 4 3 30 30 H 1.09001 * 109.47480 * 59.99554 * 14 13 4 31 31 H 1.09000 * 109.46688 * 300.00090 * 14 13 4 32 32 H 1.09001 * 109.47397 * 59.99460 * 15 14 13 33 33 H 1.09000 * 109.47430 * 299.99591 * 15 14 13 34 34 H 1.08002 * 120.01369 * 0.02562 * 18 17 16 35 35 H 1.08004 * 119.96740 * 180.24860 * 19 18 17 36 36 H 1.07995 * 119.95731 * 179.72455 * 20 19 18 37 37 H 1.08009 * 120.02904 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2935 -0.4819 5 6 3.4761 -2.2726 0.4125 6 1 4.0814 -3.1083 0.0936 7 6 3.0439 -2.1913 1.7292 8 7 1.9900 -1.4633 2.0320 9 14 3.9582 -3.1147 3.0710 10 1 5.0266 -2.2474 3.6290 11 1 3.0088 -3.4872 4.1505 12 1 4.5658 -4.3437 2.5003 13 6 3.2589 -1.5402 -1.9207 14 6 1.9492 -2.1256 -2.4525 15 6 2.0789 -2.3837 -3.9549 16 8 0.8559 -2.9310 -4.4516 17 6 0.8029 -3.2196 -5.7785 18 6 1.9038 -2.9755 -6.5872 19 6 1.8500 -3.2743 -7.9346 20 6 0.6963 -3.8058 -8.4809 21 6 -0.4049 -4.0456 -7.6781 22 17 -1.8516 -4.7136 -8.3668 23 6 -0.3535 -3.7532 -6.3275 24 1 -1.0498 -0.0003 -0.0003 25 1 3.0092 0.1719 1.0133 26 1 3.0089 0.7929 -0.6549 27 1 1.6882 -1.4061 2.9521 28 1 4.0711 -2.2447 -2.0999 29 1 3.4721 -0.6020 -2.4331 30 1 1.1370 -1.4211 -2.2733 31 1 1.7360 -3.0637 -1.9400 32 1 2.8910 -3.0885 -4.1337 33 1 2.2922 -1.4459 -4.4677 34 1 2.8039 -2.5563 -6.1622 35 1 2.7082 -3.0880 -8.5632 36 1 0.6547 -4.0346 -9.5355 37 1 -1.2129 -3.9408 -5.7008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799200553.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:08 Heat of formation + Delta-G solvation = 56.598205 kcal Electronic energy + Delta-G solvation = -19996.456616 eV Core-core repulsion = 16767.486434 eV Total energy + Delta-G solvation = -3228.970181 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.21228 -37.87672 -36.57339 -36.25114 -32.85632 -31.56697 -31.14069 -30.41309 -29.56275 -26.27078 -25.61097 -23.27170 -22.67679 -21.53145 -20.39499 -18.38980 -17.50064 -16.56548 -16.21864 -16.06795 -15.97336 -15.16874 -14.91755 -14.07907 -14.03132 -13.79366 -13.48643 -13.24988 -13.14527 -12.61428 -12.06708 -11.90339 -11.65636 -11.57786 -11.37628 -11.19834 -11.16478 -10.87879 -10.76874 -10.67421 -10.27728 -10.17524 -9.87635 -9.05763 -8.91780 -8.79779 -8.43865 -8.37051 -7.07236 -5.82602 -3.23970 0.93066 1.17753 1.84253 3.27037 3.36163 3.43259 3.44281 3.45317 4.16347 4.38087 4.51615 4.56098 4.83814 4.88141 5.05308 5.19591 5.22741 5.25911 5.32452 5.47894 5.62168 5.80575 5.85889 5.95921 5.96901 6.08837 6.14730 6.16525 6.32850 6.42150 6.65782 6.75218 7.00090 7.20266 7.41303 7.42355 7.72028 8.24316 9.06574 9.18555 9.72858 10.18355 11.20933 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.002807 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.407554 B = 9972.376377 C =10112.950130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.096 4.096 3 C 0.266 3.734 4 N -0.583 5.583 5 C -0.268 4.268 6 H 0.076 0.924 7 C 0.004 3.996 8 N -0.887 5.887 9 Si 0.902 3.098 10 H -0.287 1.287 11 H -0.293 1.293 12 H -0.280 1.280 13 C 0.155 3.845 14 C -0.141 4.141 15 C 0.062 3.938 16 O -0.308 6.308 17 C 0.153 3.847 18 C -0.208 4.208 19 C -0.067 4.067 20 C -0.158 4.158 21 C 0.004 3.996 22 Cl -0.069 7.069 23 C -0.152 4.152 24 H 0.189 0.811 25 H 0.097 0.903 26 H 0.037 0.963 27 H 0.255 0.745 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 -1.637 -19.176 19.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.099 4.099 3 C 0.141 3.859 4 N -0.303 5.303 5 C -0.397 4.397 6 H 0.094 0.906 7 C -0.195 4.195 8 N -0.529 5.529 9 Si 0.731 3.269 10 H -0.214 1.214 11 H -0.219 1.219 12 H -0.205 1.205 13 C 0.027 3.973 14 C -0.182 4.182 15 C -0.014 4.014 16 O -0.220 6.220 17 C 0.106 3.894 18 C -0.226 4.226 19 C -0.085 4.085 20 C -0.177 4.177 21 C -0.022 4.022 22 Cl -0.040 7.040 23 C -0.171 4.171 24 H 0.206 0.794 25 H 0.115 0.885 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.294 -1.703 -18.878 18.998 hybrid contribution -0.098 -0.700 0.734 1.019 sum -1.392 -2.403 -18.144 18.355 Atomic orbital electron populations 1.24178 0.95350 1.05302 1.07104 1.24281 0.95282 0.95703 0.94628 1.17854 0.82873 0.85576 0.99609 1.44217 1.74419 1.11849 0.99790 1.19235 1.26421 1.04276 0.89757 0.90578 1.24928 0.96370 0.99709 0.98538 1.70137 1.21340 1.43361 1.18104 0.86302 0.79274 0.79349 0.81930 1.21381 1.21913 1.20516 1.20783 0.93589 0.97493 0.85419 1.22463 1.02754 1.03427 0.89519 1.23120 0.84042 0.97035 0.97173 1.86200 1.39177 1.77274 1.19393 1.18910 0.93238 0.93166 0.84047 1.21454 0.99277 1.06989 0.94929 1.20886 0.97247 0.95992 0.94399 1.20897 0.92449 1.04246 1.00151 1.20554 0.88686 1.00139 0.92856 1.98371 1.37063 1.83946 1.84581 1.20256 0.98492 1.04880 0.93500 0.79359 0.88485 0.94502 0.93466 0.93080 0.93951 0.91164 0.90880 0.92194 0.92334 0.84615 0.84883 0.85039 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.84 19.25 29.55 0.57 -6.27 16 2 C -0.10 -2.30 10.54 -37.12 -0.39 -2.69 16 3 C 0.27 6.14 5.45 -6.83 -0.04 6.10 16 4 N -0.58 -13.70 2.50 -176.57 -0.44 -14.14 16 5 C -0.27 -6.97 9.66 -15.06 -0.15 -7.12 16 6 H 0.08 1.94 7.90 -52.48 -0.41 1.53 16 7 C 0.00 0.11 4.85 -17.43 -0.08 0.02 16 8 N -0.89 -24.79 9.50 55.49 0.53 -24.27 16 9 Si 0.90 21.13 29.61 -169.99 -5.03 16.09 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.15 2.91 5.70 -4.04 -0.02 2.88 16 14 C -0.14 -2.59 5.76 -26.73 -0.15 -2.75 16 15 C 0.06 0.89 4.74 37.15 0.18 1.06 16 16 O -0.31 -4.84 10.14 -19.43 -0.20 -5.04 16 17 C 0.15 2.07 6.69 -39.22 -0.26 1.81 16 18 C -0.21 -2.32 9.04 -39.43 -0.36 -2.68 16 19 C -0.07 -0.63 10.04 -39.61 -0.40 -1.03 16 20 C -0.16 -1.55 9.83 -39.52 -0.39 -1.94 16 21 C 0.00 0.05 6.32 -39.52 -0.25 -0.20 16 22 Cl -0.07 -0.70 28.95 -51.86 -1.50 -2.21 16 23 C -0.15 -1.93 9.77 -39.40 -0.38 -2.32 16 24 H 0.19 3.67 7.80 -54.10 -0.42 3.24 16 25 H 0.10 2.45 6.42 -51.93 -0.33 2.11 16 26 H 0.04 0.73 7.98 -51.93 -0.41 0.32 16 27 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.05 0.91 8.02 -51.93 -0.42 0.49 16 29 H 0.04 0.70 7.95 -51.93 -0.41 0.29 16 30 H 0.07 1.43 7.20 -51.93 -0.37 1.06 16 31 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 32 H 0.06 0.77 7.67 -51.93 -0.40 0.37 16 33 H 0.06 0.74 7.65 -51.93 -0.40 0.34 16 34 H 0.14 1.32 6.30 -52.49 -0.33 0.99 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -29.20 335.17 -8.47 -37.66 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -4.74 Total: 1.94 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -2.13 Total: -15.10 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.08 Total: -38.40 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.20 Total: -5.04 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.09 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.20 -8.47 -37.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799200553.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.262 kcal (2) G-P(sol) polarization free energy of solvation -29.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds