Wall clock time and date at job start Tue Mar 31 2020 07:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47102 * 159.05986 * 3 2 1 5 5 C 1.36935 * 119.99973 * 264.38601 * 4 3 2 6 6 H 1.08001 * 120.00478 * 198.54254 * 5 4 3 7 7 C 1.38810 * 120.00066 * 18.54521 * 5 4 3 8 8 N 1.31624 * 120.00249 * 11.34098 * 7 5 4 9 9 Si 1.86798 * 120.00211 * 191.33838 * 7 5 4 10 10 H 1.48498 * 109.47363 * 84.97994 * 9 7 5 11 11 H 1.48502 * 109.47643 * 204.97903 * 9 7 5 12 12 H 1.48506 * 109.47212 * 324.97856 * 9 7 5 13 13 C 1.46501 * 120.00059 * 84.38417 * 4 3 2 14 14 C 1.53002 * 109.46930 * 270.00317 * 13 4 3 15 15 C 1.53001 * 109.46738 * 180.02562 * 14 13 4 16 16 O 1.42901 * 109.46819 * 179.97438 * 15 14 13 17 17 C 1.35926 * 116.99747 * 179.97438 * 16 15 14 18 18 C 1.38718 * 120.04519 * 0.27809 * 17 16 15 19 19 C 1.38139 * 119.95728 * 180.23100 * 18 17 16 20 20 C 1.38365 * 120.04435 * 359.49367 * 19 18 17 21 21 Cl 1.73603 * 119.96016 * 180.27639 * 20 19 18 22 22 C 1.38362 * 120.08304 * 0.25241 * 20 19 18 23 23 C 1.38148 * 120.04252 * 0.02562 * 22 20 19 24 24 H 4.40647 * 5.51402 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.47709 * 39.05851 * 3 2 1 26 26 H 1.08999 * 109.47390 * 279.06035 * 3 2 1 27 27 H 0.96996 * 120.00432 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.46785 * 150.00643 * 13 4 3 29 29 H 1.08994 * 109.46817 * 30.00172 * 13 4 3 30 30 H 1.08991 * 109.47153 * 59.99811 * 14 13 4 31 31 H 1.09007 * 109.46940 * 299.99678 * 14 13 4 32 32 H 1.08998 * 109.47458 * 60.00357 * 15 14 13 33 33 H 1.08998 * 109.47325 * 299.99656 * 15 14 13 34 34 H 1.07998 * 120.02102 * 359.97438 * 18 17 16 35 35 H 1.08002 * 119.97730 * 179.76901 * 19 18 17 36 36 H 1.08002 * 119.97880 * 180.02562 * 22 20 19 37 37 H 1.07996 * 120.01571 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2909 -0.4936 5 6 3.4713 1.4360 -1.8128 6 1 4.0982 2.2591 -2.1225 7 6 3.0076 0.5252 -2.7521 8 7 2.0719 -0.3403 -2.4236 9 14 3.7114 0.5279 -4.4824 10 1 4.9522 -0.2874 -4.5134 11 1 2.7168 -0.0487 -5.4224 12 1 4.0248 1.9219 -4.8872 13 6 3.2603 2.4258 0.4240 14 6 1.9507 3.2167 0.4406 15 6 2.0832 4.4024 1.3985 16 8 0.8602 5.1415 1.4136 17 6 0.8096 6.2344 2.2202 18 6 1.9162 6.5910 2.9768 19 6 1.8612 7.6993 3.7995 20 6 0.7068 8.4595 3.8614 21 17 0.6425 9.8560 4.8907 22 6 -0.3963 8.1084 3.1035 23 6 -0.3471 6.9975 2.2838 24 1 -1.0503 -0.0003 0.0003 25 1 3.0098 -0.7972 -0.6475 26 1 3.0094 -0.1610 1.0148 27 1 1.7477 -0.9765 -3.0801 28 1 4.0716 3.0733 0.0912 29 1 3.4762 2.0593 1.4275 30 1 1.1395 2.5693 0.7732 31 1 1.7349 3.5833 -0.5630 32 1 2.8943 5.0498 1.0654 33 1 2.2993 4.0364 2.4022 34 1 2.8189 6.0002 2.9258 35 1 2.7214 7.9751 4.3916 36 1 -1.2964 8.7033 3.1528 37 1 -1.2082 6.7241 1.6922 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799201359.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:11 Heat of formation + Delta-G solvation = 56.807463 kcal Electronic energy + Delta-G solvation = -19964.255799 eV Core-core repulsion = 16735.294692 eV Total energy + Delta-G solvation = -3228.961107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.22094 -37.88196 -36.53234 -36.19160 -32.84618 -31.53551 -31.36614 -30.42562 -29.34912 -26.25591 -25.62027 -23.38587 -22.54655 -21.57357 -20.40351 -18.33789 -17.49242 -16.71876 -16.43647 -16.07538 -15.97578 -15.00412 -14.75201 -14.05076 -13.92219 -13.74128 -13.48213 -13.24935 -13.14725 -12.65274 -12.42731 -11.85464 -11.63258 -11.57385 -11.33626 -11.15920 -11.05953 -10.84309 -10.69061 -10.64468 -10.27601 -10.17672 -9.88750 -9.32717 -9.00023 -8.81814 -8.37405 -8.23487 -7.04430 -5.80033 -3.28246 1.02679 1.06873 1.98436 3.21067 3.35066 3.40953 3.42250 3.44565 4.17543 4.39646 4.50952 4.54124 4.61092 4.94202 5.11593 5.21984 5.23167 5.30928 5.36706 5.48745 5.68855 5.79008 5.82076 5.88097 5.96482 6.03524 6.11149 6.17954 6.32727 6.43389 6.69850 6.74475 6.99200 7.32157 7.40495 7.48113 7.68650 8.26999 9.09082 9.20053 9.72232 10.17453 11.22135 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.028427 B = 0.002685 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.737226 B =10427.700581 C =10741.350226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 C -0.088 4.088 3 C 0.264 3.736 4 N -0.586 5.586 5 C -0.261 4.261 6 H 0.076 0.924 7 C 0.001 3.999 8 N -0.898 5.898 9 Si 0.909 3.091 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.281 1.281 13 C 0.154 3.846 14 C -0.141 4.141 15 C 0.060 3.940 16 O -0.308 6.308 17 C 0.146 3.854 18 C -0.201 4.201 19 C -0.068 4.068 20 C -0.082 4.082 21 Cl -0.080 7.080 22 C -0.070 4.070 23 C -0.146 4.146 24 H 0.189 0.811 25 H 0.109 0.891 26 H 0.032 0.968 27 H 0.255 0.745 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.317 13.964 12.782 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.329 4.329 2 C -0.091 4.091 3 C 0.139 3.861 4 N -0.305 5.305 5 C -0.390 4.390 6 H 0.093 0.907 7 C -0.197 4.197 8 N -0.542 5.542 9 Si 0.739 3.261 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.206 1.206 13 C 0.027 3.973 14 C -0.181 4.181 15 C -0.015 4.015 16 O -0.221 6.221 17 C 0.099 3.901 18 C -0.220 4.220 19 C -0.087 4.087 20 C -0.109 4.109 21 Cl -0.051 7.051 22 C -0.089 4.089 23 C -0.165 4.165 24 H 0.206 0.794 25 H 0.127 0.873 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.468 13.850 12.595 18.778 hybrid contribution -0.052 0.204 -0.946 0.969 sum -1.520 14.054 11.649 18.317 Atomic orbital electron populations 1.24185 0.95358 1.04751 1.08642 1.24338 0.95288 0.96148 0.93356 1.18002 0.82749 0.89915 0.95405 1.44150 1.74647 1.05155 1.06564 1.19268 1.24900 1.11874 0.82951 0.90663 1.25015 0.97071 0.99537 0.98119 1.70015 1.28115 1.22266 1.33791 0.86205 0.78126 0.77707 0.84045 1.21330 1.21757 1.20623 1.20789 0.93550 0.89484 0.93503 1.22454 1.02771 0.94154 0.98744 1.23121 0.84117 0.93470 1.00787 1.86212 1.39078 1.36621 1.60147 1.19232 0.93818 0.87316 0.89693 1.21299 0.99403 1.00276 1.01010 1.20822 0.96674 0.93564 0.97642 1.20727 0.96891 0.93126 1.00133 1.98350 1.98664 1.41165 1.66949 1.20828 0.97466 0.96125 0.94491 1.20444 0.97755 0.95743 1.02590 0.79414 0.87308 0.95031 0.93401 0.93135 0.93963 0.91165 0.90925 0.92196 0.92320 0.84326 0.84853 0.84503 0.84228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.07 19.25 29.55 0.57 -6.51 16 2 C -0.09 -2.12 10.58 -37.13 -0.39 -2.52 16 3 C 0.26 6.14 5.45 -6.83 -0.04 6.11 16 4 N -0.59 -13.77 2.50 -176.58 -0.44 -14.21 16 5 C -0.26 -6.76 9.72 -15.06 -0.15 -6.90 16 6 H 0.08 1.90 7.84 -52.49 -0.41 1.49 16 7 C 0.00 0.02 5.12 -17.43 -0.09 -0.06 16 8 N -0.90 -24.95 8.96 55.49 0.50 -24.45 16 9 Si 0.91 21.19 29.57 -169.99 -5.03 16.17 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 13 C 0.15 2.90 5.70 -4.04 -0.02 2.88 16 14 C -0.14 -2.56 5.77 -26.73 -0.15 -2.72 16 15 C 0.06 0.86 4.74 37.16 0.18 1.04 16 16 O -0.31 -4.73 10.14 -19.51 -0.20 -4.93 16 17 C 0.15 1.92 6.69 -39.23 -0.26 1.66 16 18 C -0.20 -2.27 9.04 -39.44 -0.36 -2.63 16 19 C -0.07 -0.70 9.82 -39.57 -0.39 -1.09 16 20 C -0.08 -0.86 6.32 -39.49 -0.25 -1.11 16 21 Cl -0.08 -0.76 28.95 -51.86 -1.50 -2.27 16 22 C -0.07 -0.72 9.82 -39.57 -0.39 -1.11 16 23 C -0.15 -1.70 9.99 -39.44 -0.39 -2.09 16 24 H 0.19 3.65 7.80 -54.08 -0.42 3.23 16 25 H 0.11 2.78 6.19 -51.93 -0.32 2.46 16 26 H 0.03 0.64 7.97 -51.93 -0.41 0.23 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 29 H 0.04 0.70 7.95 -51.93 -0.41 0.29 16 30 H 0.07 1.42 7.21 -51.93 -0.37 1.05 16 31 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.06 0.77 7.65 -51.93 -0.40 0.37 16 33 H 0.06 0.74 7.67 -51.93 -0.40 0.34 16 34 H 0.14 1.37 6.30 -52.49 -0.33 1.04 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -28.91 334.68 -8.49 -37.40 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.73 Total: 2.30 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -2.14 Total: -15.06 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.06 Total: -38.66 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.20 Total: -4.93 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.17 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.91 -8.49 -37.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201359.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.204 kcal (2) G-P(sol) polarization free energy of solvation -28.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds