Wall clock time and date at job start Tue Mar 31 2020 07:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47102 * 159.05986 * 3 2 1 5 5 C 1.36935 * 119.99973 * 264.38601 * 4 3 2 6 6 H 1.08001 * 120.00478 * 198.54254 * 5 4 3 7 7 C 1.38810 * 120.00066 * 18.54521 * 5 4 3 8 8 N 1.31624 * 120.00249 * 11.34098 * 7 5 4 9 9 Si 1.86798 * 120.00211 * 191.33838 * 7 5 4 10 10 H 1.48498 * 109.47363 * 84.97994 * 9 7 5 11 11 H 1.48502 * 109.47643 * 204.97903 * 9 7 5 12 12 H 1.48506 * 109.47212 * 324.97856 * 9 7 5 13 13 C 1.46501 * 120.00059 * 84.38417 * 4 3 2 14 14 C 1.53002 * 109.46930 * 270.00317 * 13 4 3 15 15 C 1.53001 * 109.46738 * 180.02562 * 14 13 4 16 16 O 1.42901 * 109.46819 * 179.97438 * 15 14 13 17 17 C 1.35926 * 116.99747 * 179.97438 * 16 15 14 18 18 C 1.38718 * 120.04519 * 0.27809 * 17 16 15 19 19 C 1.38139 * 119.95728 * 180.23100 * 18 17 16 20 20 C 1.38365 * 120.04435 * 359.49367 * 19 18 17 21 21 Cl 1.73603 * 119.96016 * 180.27639 * 20 19 18 22 22 C 1.38362 * 120.08304 * 0.25241 * 20 19 18 23 23 C 1.38148 * 120.04252 * 0.02562 * 22 20 19 24 24 H 4.40647 * 5.51402 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.47709 * 39.05851 * 3 2 1 26 26 H 1.08999 * 109.47390 * 279.06035 * 3 2 1 27 27 H 0.96996 * 120.00432 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.46785 * 150.00643 * 13 4 3 29 29 H 1.08994 * 109.46817 * 30.00172 * 13 4 3 30 30 H 1.08991 * 109.47153 * 59.99811 * 14 13 4 31 31 H 1.09007 * 109.46940 * 299.99678 * 14 13 4 32 32 H 1.08998 * 109.47458 * 60.00357 * 15 14 13 33 33 H 1.08998 * 109.47325 * 299.99656 * 15 14 13 34 34 H 1.07998 * 120.02102 * 359.97438 * 18 17 16 35 35 H 1.08002 * 119.97730 * 179.76901 * 19 18 17 36 36 H 1.08002 * 119.97880 * 180.02562 * 22 20 19 37 37 H 1.07996 * 120.01571 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2909 -0.4936 5 6 3.4713 1.4360 -1.8128 6 1 4.0982 2.2591 -2.1225 7 6 3.0076 0.5252 -2.7521 8 7 2.0719 -0.3403 -2.4236 9 14 3.7114 0.5279 -4.4824 10 1 4.9522 -0.2874 -4.5134 11 1 2.7168 -0.0487 -5.4224 12 1 4.0248 1.9219 -4.8872 13 6 3.2603 2.4258 0.4240 14 6 1.9507 3.2167 0.4406 15 6 2.0832 4.4024 1.3985 16 8 0.8602 5.1415 1.4136 17 6 0.8096 6.2344 2.2202 18 6 1.9162 6.5910 2.9768 19 6 1.8612 7.6993 3.7995 20 6 0.7068 8.4595 3.8614 21 17 0.6425 9.8560 4.8907 22 6 -0.3963 8.1084 3.1035 23 6 -0.3471 6.9975 2.2838 24 1 -1.0503 -0.0003 0.0003 25 1 3.0098 -0.7972 -0.6475 26 1 3.0094 -0.1610 1.0148 27 1 1.7477 -0.9765 -3.0801 28 1 4.0716 3.0733 0.0912 29 1 3.4762 2.0593 1.4275 30 1 1.1395 2.5693 0.7732 31 1 1.7349 3.5833 -0.5630 32 1 2.8943 5.0498 1.0654 33 1 2.2993 4.0364 2.4022 34 1 2.8189 6.0002 2.9258 35 1 2.7214 7.9751 4.3916 36 1 -1.2964 8.7033 3.1528 37 1 -1.2082 6.7241 1.6922 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799201359.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:11 Heat of formation + Delta-G solvation = 43.339294 kcal Electronic energy + Delta-G solvation = -19964.839823 eV Core-core repulsion = 16735.294692 eV Total energy + Delta-G solvation = -3229.545131 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.16552 -38.87425 -38.08433 -37.13608 -34.41576 -33.39484 -32.31638 -31.89757 -30.39771 -28.02074 -27.16457 -24.59725 -23.61497 -22.76520 -21.88469 -19.38849 -19.25167 -18.28614 -17.52547 -17.17904 -17.05773 -16.79067 -15.61867 -15.58880 -15.47540 -14.88430 -14.65103 -14.53705 -14.46927 -13.96052 -13.44669 -13.24904 -13.12753 -12.99516 -12.71820 -12.58714 -12.55474 -12.21353 -12.09334 -12.02932 -11.72678 -11.63756 -11.38606 -10.89122 -10.65122 -10.22883 -10.13947 -9.13676 -8.92876 -7.79496 -5.27725 0.19377 0.22092 1.18741 1.49344 1.50063 1.57397 2.16888 2.37799 2.54179 2.59912 2.62345 3.34204 3.70302 3.79007 3.86191 4.01226 4.08576 4.12429 4.23201 4.35912 4.44348 4.49834 4.57706 4.71788 4.84366 4.91618 4.95487 5.01769 5.21274 5.24224 5.26048 5.44259 5.45976 5.58889 5.65268 5.73343 6.32769 6.40598 7.13533 7.37777 7.84676 8.25401 9.20465 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.028427 B = 0.002685 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.737226 B =10427.700581 C =10741.350226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.117 4.117 3 C 0.264 3.736 4 N -0.602 5.602 5 C -0.262 4.262 6 H 0.079 0.921 7 C -0.052 4.052 8 N -0.922 5.922 9 Si 0.967 3.033 10 H -0.282 1.282 11 H -0.303 1.303 12 H -0.274 1.274 13 C 0.151 3.849 14 C -0.126 4.126 15 C 0.070 3.930 16 O -0.334 6.334 17 C 0.120 3.880 18 C -0.201 4.201 19 C -0.069 4.069 20 C -0.087 4.087 21 Cl -0.071 7.071 22 C -0.069 4.069 23 C -0.156 4.156 24 H 0.215 0.785 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.245 0.755 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.638 15.654 14.176 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.330 4.330 2 C -0.120 4.120 3 C 0.139 3.861 4 N -0.321 5.321 5 C -0.392 4.392 6 H 0.097 0.903 7 C -0.247 4.247 8 N -0.568 5.568 9 Si 0.796 3.204 10 H -0.209 1.209 11 H -0.230 1.230 12 H -0.199 1.199 13 C 0.025 3.975 14 C -0.167 4.167 15 C -0.005 4.005 16 O -0.248 6.248 17 C 0.074 3.926 18 C -0.220 4.220 19 C -0.087 4.087 20 C -0.113 4.113 21 Cl -0.042 7.042 22 C -0.087 4.087 23 C -0.175 4.175 24 H 0.232 0.768 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.171 0.829 35 H 0.173 0.827 36 H 0.175 0.825 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.774 15.575 14.018 20.969 hybrid contribution -0.292 -0.204 -1.269 1.318 sum -1.066 15.371 12.749 19.999 Atomic orbital electron populations 1.24935 0.96374 1.03879 1.07826 1.24741 0.96101 0.97005 0.94147 1.17942 0.82597 0.89287 0.96248 1.44334 1.74710 1.06653 1.06440 1.19571 1.24122 1.11292 0.84234 0.90343 1.25673 0.97867 0.99906 1.01249 1.70206 1.29540 1.22987 1.34106 0.85288 0.77125 0.77715 0.80249 1.20890 1.22989 1.19918 1.20967 0.93987 0.88522 0.93988 1.22128 1.01442 0.95306 0.97810 1.22925 0.84448 0.92399 1.00753 1.86134 1.39458 1.37811 1.61405 1.19473 0.95159 0.87300 0.90627 1.21471 0.99303 1.00655 1.00579 1.21084 0.97334 0.92978 0.97352 1.20922 0.97059 0.93349 0.99994 1.98357 1.98649 1.40599 1.66591 1.21045 0.98283 0.95676 0.93734 1.20619 0.97697 0.96153 1.03060 0.76767 0.90117 0.91990 0.94495 0.91816 0.91156 0.93649 0.94371 0.90407 0.90081 0.82905 0.82724 0.82495 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.17 19.25 74.32 1.43 -12.74 16 2 C -0.12 -5.66 10.58 31.12 0.33 -5.33 16 3 C 0.26 12.32 5.45 84.57 0.46 12.78 16 4 N -0.60 -28.09 2.50 -712.57 -1.78 -29.87 16 5 C -0.26 -13.60 9.72 84.03 0.82 -12.78 16 6 H 0.08 3.92 7.84 -2.91 -0.02 3.90 16 7 C -0.05 -2.78 5.12 84.86 0.43 -2.35 16 8 N -0.92 -52.38 8.96 21.65 0.19 -52.19 16 9 Si 0.97 44.10 29.57 68.60 2.03 46.12 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 C 0.15 5.47 5.70 86.38 0.49 5.97 16 14 C -0.13 -4.56 5.77 30.60 0.18 -4.39 16 15 C 0.07 1.88 4.74 71.98 0.34 2.22 16 16 O -0.33 -10.06 10.14 -92.71 -0.94 -11.00 16 17 C 0.12 3.01 6.69 22.50 0.15 3.16 16 18 C -0.20 -4.10 9.04 22.36 0.20 -3.90 16 19 C -0.07 -1.24 9.82 22.28 0.22 -1.02 16 20 C -0.09 -1.61 6.32 22.33 0.14 -1.47 16 21 Cl -0.07 -1.19 28.95 -2.72 -0.08 -1.26 16 22 C -0.07 -1.28 9.82 22.28 0.22 -1.06 16 23 C -0.16 -3.47 9.99 22.36 0.22 -3.25 16 24 H 0.22 8.14 7.80 -4.40 -0.03 8.10 16 25 H 0.08 4.22 6.19 -2.39 -0.01 4.21 16 26 H 0.06 2.45 7.97 -2.39 -0.02 2.43 16 27 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 28 H 0.06 2.13 8.03 -2.39 -0.02 2.11 16 29 H 0.07 2.15 7.95 -2.39 -0.02 2.13 16 30 H 0.04 1.84 7.21 -2.39 -0.02 1.83 16 31 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.08 1.81 7.65 -2.39 -0.02 1.79 16 33 H 0.08 1.82 7.67 -2.39 -0.02 1.80 16 34 H 0.15 2.57 6.30 -2.91 -0.02 2.55 16 35 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -62.55 334.68 6.11 -56.43 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 1.06 Total: 15.92 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 5.64 Total: -24.15 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -1.59 Total: -82.06 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.94 Total: -11.00 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.26 kcal Total: -62.55 6.11 -56.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201359.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.772 kcal (2) G-P(sol) polarization free energy of solvation -62.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds