Wall clock time and date at job start Tue Mar 31 2020 07:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39642 * 120.48674 * 181.21851 * 3 2 1 5 5 N 1.31760 * 120.88217 * 180.02562 * 4 3 2 6 6 C 1.31729 * 122.04350 * 359.69377 * 5 4 3 7 7 C 1.39620 * 120.87512 * 0.59714 * 6 5 4 8 8 C 1.47815 * 120.49589 * 179.69794 * 7 6 5 9 9 O 1.21555 * 120.00316 * 179.72480 * 8 7 6 10 10 N 1.34777 * 119.99823 * 359.44329 * 8 7 6 11 11 C 1.39386 * 120.00424 * 175.23497 * 10 8 7 12 12 C 1.38614 * 119.58715 * 185.37356 * 11 10 8 13 13 C 1.40803 * 118.79922 * 180.02562 * 12 11 10 14 14 C 1.41535 * 121.00119 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00136 * 151.71428 * 14 13 12 16 16 C 1.40039 * 120.00191 * 331.72547 * 14 13 12 17 17 N 1.30744 * 119.99328 * 350.20038 * 16 14 13 18 18 Si 1.86793 * 120.00352 * 170.21159 * 16 14 13 19 19 H 1.48497 * 109.47420 * 89.99140 * 18 16 14 20 20 H 1.48495 * 109.47034 * 209.99503 * 18 16 14 21 21 H 1.48507 * 109.46803 * 329.99403 * 18 16 14 22 22 C 1.41177 * 118.00364 * 0.02562 * 13 12 11 23 23 C 1.37591 * 119.02381 * 0.02562 * 22 13 12 24 24 N 1.32090 * 121.10713 * 359.72140 * 23 22 13 25 25 C 1.39672 * 120.48825 * 1.23288 * 3 2 1 26 26 H 4.52738 * 13.92889 * 359.97438 * 4 2 1 27 27 H 1.07994 * 119.55809 * 0.04337 * 4 3 2 28 28 H 1.08001 * 119.56102 * 180.31442 * 6 5 4 29 29 H 0.97011 * 120.00045 * 355.24502 * 10 8 7 30 30 H 1.08005 * 120.60276 * 0.03062 * 12 11 10 31 31 H 0.97006 * 119.99549 * 180.02562 * 17 16 14 32 32 H 1.08002 * 120.49303 * 180.02562 * 22 13 12 33 33 H 1.07997 * 119.44504 * 180.02562 * 23 22 13 34 34 H 1.07995 * 120.92178 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3139 1.2040 0.0256 5 7 4.6315 1.2137 0.0253 6 6 5.3386 0.1025 0.0071 7 6 4.7122 -1.1449 -0.0253 8 6 5.5139 -2.3865 -0.0523 9 8 4.9592 -3.4678 -0.0754 10 7 6.8600 -2.3194 -0.0570 11 6 7.6163 -3.4878 0.0179 12 6 8.9958 -3.4044 0.1253 13 6 9.7436 -4.5951 0.1993 14 6 11.1543 -4.5643 0.3092 15 1 11.6751 -5.3701 0.8050 16 6 11.8750 -3.4888 -0.2247 17 7 11.2737 -2.6136 -0.9875 18 14 13.6951 -3.3049 0.1526 19 1 14.4890 -4.0249 -0.8752 20 1 14.0600 -1.8655 0.1412 21 1 13.9834 -3.8780 1.4919 22 6 9.0441 -5.8207 0.1594 23 6 7.6726 -5.8034 0.0503 24 7 7.0073 -4.6639 -0.0115 25 6 3.3152 -1.2024 -0.0259 26 1 -1.0500 -0.0011 -0.0005 27 1 2.7743 2.1393 0.0462 28 1 6.4172 0.1571 0.0127 29 1 7.3025 -1.4579 -0.1124 30 1 9.4881 -2.4434 0.1518 31 1 11.7730 -1.8687 -1.3577 32 1 9.5776 -6.7582 0.2137 33 1 7.1306 -6.7370 0.0196 34 1 2.7988 -2.1506 -0.0467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807082550.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:10 Heat of formation + Delta-G solvation = 77.894540 kcal Electronic energy + Delta-G solvation = -21089.847797 eV Core-core repulsion = 17760.693601 eV Total energy + Delta-G solvation = -3329.154197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.91763 -40.78313 -39.41439 -36.22555 -35.71648 -35.27091 -33.53693 -32.45834 -31.77662 -30.29109 -27.92202 -26.09045 -25.21638 -23.89934 -23.30635 -21.88428 -20.23250 -19.57310 -18.62220 -17.98021 -17.93258 -17.08347 -16.84850 -16.39857 -16.17175 -16.05539 -15.69413 -15.23600 -15.11466 -14.61164 -14.35870 -14.31435 -14.18926 -13.64203 -13.20087 -12.86571 -12.70862 -12.69134 -12.15850 -11.90846 -11.83497 -11.58889 -11.47043 -11.19556 -10.96944 -10.65715 -9.94291 -9.91646 -9.67189 -8.92586 -8.60530 -6.57877 -0.66170 -0.25560 0.76003 0.98885 1.42861 1.52505 1.56792 1.63600 1.69410 1.96116 2.16008 2.21712 2.79407 2.87865 3.02987 3.23476 3.55691 3.61416 3.66719 3.71642 3.98913 4.17991 4.32461 4.68929 4.76241 4.80079 4.82325 4.89805 5.01243 5.06166 5.23412 5.36191 5.44646 5.57405 5.90464 6.09006 6.39600 6.48147 6.52374 6.63508 6.77333 6.83545 7.11141 7.76512 8.30025 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.024886 B = 0.003379 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.881926 B = 8283.547159 C = 9335.623510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.208 4.208 3 C -0.043 4.043 4 C 0.150 3.850 5 N -0.489 5.489 6 C 0.145 3.855 7 C -0.185 4.185 8 C 0.549 3.451 9 O -0.516 6.516 10 N -0.643 5.643 11 C 0.331 3.669 12 C -0.249 4.249 13 C 0.114 3.886 14 C -0.484 4.484 15 H 0.084 0.916 16 C 0.038 3.962 17 N -0.818 5.818 18 Si 0.989 3.011 19 H -0.264 1.264 20 H -0.264 1.264 21 H -0.259 1.259 22 C -0.292 4.292 23 C 0.112 3.888 24 N -0.578 5.578 25 C -0.006 4.006 26 H 0.267 0.733 27 H 0.198 0.802 28 H 0.182 0.818 29 H 0.423 0.577 30 H 0.129 0.871 31 H 0.292 0.708 32 H 0.118 0.882 33 H 0.152 0.848 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.980 10.411 1.335 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.209 4.209 3 C -0.045 4.045 4 C -0.007 4.007 5 N -0.196 5.196 6 C -0.013 4.013 7 C -0.190 4.190 8 C 0.336 3.664 9 O -0.389 6.389 10 N -0.290 5.290 11 C 0.105 3.895 12 C -0.274 4.274 13 C 0.106 3.894 14 C -0.515 4.515 15 H 0.102 0.898 16 C -0.179 4.179 17 N -0.444 5.444 18 Si 0.809 3.191 19 H -0.189 1.189 20 H -0.188 1.188 21 H -0.183 1.183 22 C -0.315 4.315 23 C -0.041 4.041 24 N -0.297 5.297 25 C -0.032 4.032 26 H 0.283 0.717 27 H 0.215 0.785 28 H 0.198 0.802 29 H 0.262 0.738 30 H 0.146 0.854 31 H 0.103 0.897 32 H 0.136 0.864 33 H 0.169 0.831 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.862 10.677 1.135 16.754 hybrid contribution 1.451 -0.684 -0.033 1.604 sum -11.411 9.992 1.102 15.208 Atomic orbital electron populations 1.25885 0.96392 0.95439 0.95501 1.19763 0.91770 1.04886 1.04503 1.16925 0.89205 0.93870 1.04507 1.23679 0.89316 0.98068 0.89638 1.67831 1.08309 1.30096 1.13396 1.23365 1.01542 0.85955 0.90394 1.20758 0.94766 0.94103 1.09397 1.18559 0.81997 0.89047 0.76833 1.90835 1.70964 1.30488 1.46635 1.43251 1.05800 1.08290 1.71643 1.18357 0.88043 0.86257 0.96838 1.21591 0.90216 1.00578 1.15039 1.18018 0.94338 0.90845 0.86224 1.19849 0.91282 1.06555 1.33803 0.89790 1.26793 1.05822 0.93415 0.91842 1.69774 1.40497 1.11418 1.22707 0.85097 0.75478 0.78721 0.79804 1.18928 1.18842 1.18274 1.22156 0.95311 0.98289 1.15787 1.22232 0.91522 0.95042 0.95345 1.67327 1.40239 0.97327 1.24855 1.21844 0.92142 0.99199 0.90042 0.71737 0.78542 0.80154 0.73782 0.85378 0.89719 0.86385 0.83103 0.83904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 19.25 74.32 1.43 -0.07 16 2 C -0.21 -4.01 13.27 30.02 0.40 -3.61 16 3 C -0.04 -0.96 5.73 -21.35 -0.12 -1.09 16 4 C 0.15 2.97 10.91 85.04 0.93 3.90 16 5 N -0.49 -11.30 10.33 -193.74 -2.00 -13.30 16 6 C 0.14 3.55 10.70 85.04 0.91 4.46 16 7 C -0.18 -5.45 5.88 -20.03 -0.12 -5.56 16 8 C 0.55 21.22 7.74 86.78 0.67 21.89 16 9 O -0.52 -24.18 14.67 -3.89 -0.06 -24.24 16 10 N -0.64 -25.20 5.33 -311.30 -1.66 -26.86 16 11 C 0.33 16.12 7.41 132.78 0.98 17.10 16 12 C -0.25 -12.64 8.59 22.99 0.20 -12.44 16 13 C 0.11 6.02 5.58 -21.12 -0.12 5.90 16 14 C -0.48 -24.72 9.13 23.52 0.21 -24.51 16 15 H 0.08 4.10 7.87 -2.91 -0.02 4.08 16 16 C 0.04 1.77 5.30 85.29 0.45 2.22 16 17 N -0.82 -39.51 10.83 21.84 0.24 -39.27 16 18 Si 0.99 35.60 29.57 68.60 2.03 37.62 16 19 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 20 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 21 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 22 C -0.29 -14.33 9.90 22.84 0.23 -14.10 16 23 C 0.11 5.38 11.15 84.50 0.94 6.33 16 24 N -0.58 -29.72 7.85 -193.58 -1.52 -31.24 16 25 C -0.01 -0.17 9.44 23.00 0.22 0.05 16 26 H 0.27 0.81 7.80 -4.42 -0.03 0.78 16 27 H 0.20 2.47 8.06 -2.91 -0.02 2.44 16 28 H 0.18 3.65 6.42 -2.91 -0.02 3.63 16 29 H 0.42 13.30 6.77 -92.70 -0.63 12.67 16 30 H 0.13 6.42 6.27 -2.91 -0.02 6.40 16 31 H 0.29 12.61 8.29 -92.70 -0.77 11.84 16 32 H 0.12 5.27 8.06 -2.91 -0.02 5.24 16 33 H 0.15 6.19 8.06 -2.91 -0.02 6.17 16 34 H 0.14 4.07 7.73 -2.91 -0.02 4.04 16 Total: -1.00 -69.65 315.20 4.78 -64.87 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.54 Total: 31.95 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 7.21 Total: 0.47 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -4.94 Total: -110.67 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.06 Total: -24.24 kcal Atomic # 14 Polarization: 35.60 SS G_CDS: 2.03 Total: 37.62 kcal Total: -69.65 4.78 -64.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807082550.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.762 kcal (2) G-P(sol) polarization free energy of solvation -69.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds