Wall clock time and date at job start Tue Mar 31 2020 06:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.33162 * 123.13330 * 2 1 4 4 S 1.75736 * 109.74936 * 180.21016 * 3 2 1 5 5 C 1.70638 * 91.69041 * 359.69548 * 4 3 2 6 6 C 1.34460 * 110.52202 * 0.30376 * 5 4 3 7 7 C 1.48225 * 122.85081 * 179.72823 * 6 5 4 8 8 N 1.30874 * 126.42752 * 180.02562 * 7 6 5 9 9 O 1.21297 * 110.07905 * 179.97438 * 8 7 6 10 10 C 1.33671 * 110.04483 * 359.97438 * 9 8 7 11 11 C 1.50695 * 126.42530 * 180.02562 * 10 9 8 12 12 H 1.08996 * 109.47257 * 194.97495 * 11 10 9 13 13 N 1.46903 * 109.46964 * 314.97522 * 11 10 9 14 14 C 1.53004 * 109.47413 * 74.97488 * 11 10 9 15 15 C 1.52992 * 109.47465 * 175.00197 * 14 11 10 16 16 C 1.50700 * 109.47438 * 180.02562 * 15 14 11 17 17 H 1.07999 * 119.99531 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99928 * 180.02562 * 16 15 14 19 19 N 1.31524 * 119.99933 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00427 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47343 * 90.00111 * 20 18 16 22 22 H 1.48510 * 109.47161 * 210.00464 * 20 18 16 23 23 H 1.48506 * 109.46826 * 329.99912 * 20 18 16 24 24 N 1.30974 * 107.14724 * 359.76804 * 10 9 8 25 25 H 1.08999 * 109.47731 * 90.02445 * 1 2 3 26 26 H 1.09004 * 109.47522 * 210.02452 * 1 2 3 27 27 H 1.09002 * 109.47157 * 330.02065 * 1 2 3 28 28 H 1.08002 * 125.12160 * 359.94052 * 3 2 1 29 29 H 1.07999 * 124.73773 * 180.02562 * 5 4 3 30 30 H 1.00896 * 110.99920 * 60.00362 * 13 11 10 31 31 H 1.00899 * 110.99654 * 183.95566 * 13 11 10 32 32 H 1.09005 * 109.46893 * 295.00431 * 14 11 10 33 33 H 1.09002 * 109.46960 * 54.99737 * 14 11 10 34 34 H 1.09005 * 109.47257 * 300.00012 * 15 14 11 35 35 H 1.09002 * 109.47406 * 59.99814 * 15 14 11 36 36 H 0.96997 * 120.00249 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2348 1.1151 0.0000 4 16 3.9444 0.7083 -0.0061 5 6 3.5986 -0.9626 0.0007 6 6 2.2699 -1.1690 0.0004 7 6 1.6665 -2.5229 -0.0003 8 7 0.3883 -2.8041 -0.0011 9 8 0.2264 -4.0062 -0.0020 10 6 1.4097 -4.6279 -0.0025 11 6 1.6379 -6.1175 -0.0041 12 1 2.6741 -6.3267 0.2614 13 7 0.7441 -6.7508 0.9747 14 6 1.3458 -6.6767 -1.3980 15 6 1.6961 -8.1655 -1.4340 16 6 1.4090 -8.7162 -2.8071 17 1 1.0156 -8.0689 -3.5770 18 6 1.6476 -10.0463 -3.0802 19 7 1.3966 -10.5270 -4.2784 20 14 2.3275 -11.1659 -1.7484 21 1 1.2037 -11.7787 -0.9955 22 1 3.1473 -12.2358 -2.3720 23 1 3.1722 -10.3733 -0.8190 24 7 2.3337 -3.6996 -0.0068 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 1.8346 2.1183 -0.0009 29 1 4.3429 -1.7451 0.0004 30 1 -0.2231 -6.5714 0.7503 31 1 0.9226 -7.7418 1.0391 32 1 0.2881 -6.5466 -1.6274 33 1 1.9457 -6.1443 -2.1361 34 1 2.7538 -8.2956 -1.2047 35 1 1.0962 -8.6979 -0.6959 36 1 1.5648 -11.4627 -4.4707 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823099472.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:42 Heat of formation + Delta-G solvation = 89.831183 kcal Electronic energy + Delta-G solvation = -20286.082535 eV Core-core repulsion = 17092.889901 eV Total energy + Delta-G solvation = -3193.192634 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.40309 -38.93483 -37.01689 -35.41726 -33.12158 -31.84949 -31.32492 -30.48416 -27.85606 -26.97281 -25.05782 -24.20955 -22.67261 -21.65270 -20.33437 -18.71579 -17.92935 -17.81079 -17.32526 -16.82959 -16.20232 -15.45625 -14.66812 -14.34317 -14.28634 -13.87811 -13.69516 -13.40766 -13.28268 -12.76483 -12.70612 -12.59424 -12.52026 -12.12389 -11.85799 -11.67821 -11.37939 -11.20015 -11.05060 -10.88067 -10.40599 -10.19676 -10.01739 -9.88693 -9.36582 -8.99216 -8.70726 -8.63789 -8.48451 -6.14444 -4.14790 0.50858 1.25085 1.31247 1.64456 1.85138 2.89943 2.93978 3.22814 3.31783 3.32458 3.50484 4.05130 4.34875 4.57971 4.73332 4.84310 5.03847 5.18054 5.20389 5.26604 5.29880 5.43652 5.52008 5.63530 5.70863 5.79269 5.94175 6.09233 6.16298 6.20832 6.28799 6.54209 7.00382 7.03122 7.17160 7.43853 7.64385 8.22690 8.40674 8.89254 9.46024 10.98709 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.028806 B = 0.002986 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.798821 B = 9373.483433 C = 9645.393588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.072 4.072 3 C -0.241 4.241 4 S 0.186 5.814 5 C -0.200 4.200 6 C -0.038 4.038 7 C 0.229 3.771 8 N -0.378 5.378 9 O 0.080 5.920 10 C 0.219 3.781 11 C 0.178 3.822 12 H 0.123 0.877 13 N -0.840 5.840 14 C -0.135 4.135 15 C -0.009 4.009 16 C -0.525 4.525 17 H 0.072 0.928 18 C 0.068 3.932 19 N -0.900 5.900 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.264 1.264 24 N -0.481 5.481 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.170 0.830 29 H 0.177 0.823 30 H 0.347 0.653 31 H 0.363 0.637 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.022 0.978 35 H 0.014 0.986 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.891 20.994 11.227 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.084 4.084 3 C -0.376 4.376 4 S 0.452 5.548 5 C -0.340 4.340 6 C -0.054 4.054 7 C -0.043 4.043 8 N -0.087 5.087 9 O 0.022 5.978 10 C -0.002 4.002 11 C 0.064 3.936 12 H 0.141 0.859 13 N -0.373 5.373 14 C -0.175 4.175 15 C -0.047 4.047 16 C -0.563 4.563 17 H 0.090 0.910 18 C -0.134 4.134 19 N -0.538 5.538 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.189 1.189 24 N -0.214 5.214 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.187 0.813 29 H 0.194 0.806 30 H 0.160 0.840 31 H 0.179 0.821 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.032 0.968 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.392 22.906 11.650 25.922 hybrid contribution -1.268 -2.337 -0.364 2.683 sum 2.124 20.570 11.286 23.558 Atomic orbital electron populations 1.20661 0.88824 1.03530 1.02968 1.18886 0.97914 0.90585 1.01029 1.25390 0.96257 1.02426 1.13530 1.83073 1.05737 0.96613 1.69326 1.25164 0.99524 1.02623 1.06682 1.16259 0.91859 0.87860 1.09390 1.23309 0.85944 0.93623 1.01419 1.74900 1.18616 0.93402 1.21807 1.85255 1.34085 1.13090 1.65395 1.28867 0.79275 0.99034 0.93064 1.20248 1.00071 0.78960 0.94307 0.85906 1.58959 1.08816 1.19337 1.50213 1.22356 1.02287 0.99677 0.93206 1.19567 0.96676 0.90072 0.98339 1.21024 1.44087 0.95379 0.95839 0.90990 1.25040 0.94858 0.98092 0.95414 1.69910 1.48484 1.14814 1.20583 0.86773 0.79581 0.80619 0.82283 1.20158 1.21290 1.18860 1.71961 1.30765 0.97307 1.21371 0.90910 0.89710 0.91475 0.81293 0.80603 0.84009 0.82068 0.91538 0.91319 0.96008 0.96832 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 9.55 36.00 0.34 -0.72 16 2 C -0.07 -0.83 5.85 -105.89 -0.62 -1.45 16 3 C -0.24 -2.18 10.98 28.96 0.32 -1.87 16 4 S 0.19 1.58 23.09 -107.50 -2.48 -0.91 16 5 C -0.20 -2.30 10.67 29.40 0.31 -1.99 16 6 C -0.04 -0.51 5.80 -106.62 -0.62 -1.13 16 7 C 0.23 3.63 7.80 -156.07 -1.22 2.41 16 8 N -0.38 -6.02 9.50 31.00 0.29 -5.72 16 9 O 0.08 1.26 11.27 18.03 0.20 1.46 16 10 C 0.22 3.46 7.30 -12.98 -0.09 3.37 16 11 C 0.18 2.67 3.35 -68.86 -0.23 2.44 16 12 H 0.12 1.81 8.14 -51.93 -0.42 1.39 16 13 N -0.84 -11.21 9.17 -5.65 -0.05 -11.26 16 14 C -0.14 -2.42 4.78 -26.73 -0.13 -2.54 16 15 C -0.01 -0.19 3.81 -27.89 -0.11 -0.30 16 16 C -0.53 -14.23 9.66 -34.44 -0.33 -14.57 16 17 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 18 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 19 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 20 Si 0.88 20.55 27.47 -169.99 -4.67 15.88 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 24 N -0.48 -7.93 11.48 -9.85 -0.11 -8.04 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 1.04 5.89 -51.93 -0.31 0.73 16 27 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 28 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 29 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 30 H 0.35 4.31 8.97 -39.29 -0.35 3.96 16 31 H 0.36 4.67 7.55 -39.29 -0.30 4.37 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 35 H 0.01 0.27 6.30 -51.93 -0.33 -0.06 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 320.73 15.07 4.83 4.83 Total: -1.00 -30.79 320.73 -7.88 -38.67 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -4.20 Total: 5.87 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -2.47 Total: -14.54 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.90 Total: -51.28 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.20 Total: 1.46 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.48 Total: -0.91 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.79 -7.88 -38.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823099472.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.503 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds