Wall clock time and date at job start Tue Mar 31 2020 06:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.33162 * 123.13330 * 2 1 4 4 S 1.75736 * 109.74936 * 180.21016 * 3 2 1 5 5 C 1.70638 * 91.69041 * 359.69548 * 4 3 2 6 6 C 1.34460 * 110.52202 * 0.30376 * 5 4 3 7 7 C 1.48225 * 122.85081 * 179.72823 * 6 5 4 8 8 N 1.30874 * 126.42752 * 180.02562 * 7 6 5 9 9 O 1.21297 * 110.07905 * 179.97438 * 8 7 6 10 10 C 1.33671 * 110.04483 * 359.97438 * 9 8 7 11 11 C 1.50695 * 126.42530 * 180.02562 * 10 9 8 12 12 H 1.08996 * 109.47257 * 194.97495 * 11 10 9 13 13 N 1.46903 * 109.46964 * 314.97522 * 11 10 9 14 14 C 1.53004 * 109.47413 * 74.97488 * 11 10 9 15 15 C 1.52992 * 109.47465 * 175.00197 * 14 11 10 16 16 C 1.50700 * 109.47438 * 180.02562 * 15 14 11 17 17 H 1.07999 * 119.99531 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99928 * 180.02562 * 16 15 14 19 19 N 1.31524 * 119.99933 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00427 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47343 * 90.00111 * 20 18 16 22 22 H 1.48510 * 109.47161 * 210.00464 * 20 18 16 23 23 H 1.48506 * 109.46826 * 329.99912 * 20 18 16 24 24 N 1.30974 * 107.14724 * 359.76804 * 10 9 8 25 25 H 1.08999 * 109.47731 * 90.02445 * 1 2 3 26 26 H 1.09004 * 109.47522 * 210.02452 * 1 2 3 27 27 H 1.09002 * 109.47157 * 330.02065 * 1 2 3 28 28 H 1.08002 * 125.12160 * 359.94052 * 3 2 1 29 29 H 1.07999 * 124.73773 * 180.02562 * 5 4 3 30 30 H 1.00896 * 110.99920 * 60.00362 * 13 11 10 31 31 H 1.00899 * 110.99654 * 183.95566 * 13 11 10 32 32 H 1.09005 * 109.46893 * 295.00431 * 14 11 10 33 33 H 1.09002 * 109.46960 * 54.99737 * 14 11 10 34 34 H 1.09005 * 109.47257 * 300.00012 * 15 14 11 35 35 H 1.09002 * 109.47406 * 59.99814 * 15 14 11 36 36 H 0.96997 * 120.00249 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2348 1.1151 0.0000 4 16 3.9444 0.7083 -0.0061 5 6 3.5986 -0.9626 0.0007 6 6 2.2699 -1.1690 0.0004 7 6 1.6665 -2.5229 -0.0003 8 7 0.3883 -2.8041 -0.0011 9 8 0.2264 -4.0062 -0.0020 10 6 1.4097 -4.6279 -0.0025 11 6 1.6379 -6.1175 -0.0041 12 1 2.6741 -6.3267 0.2614 13 7 0.7441 -6.7508 0.9747 14 6 1.3458 -6.6767 -1.3980 15 6 1.6961 -8.1655 -1.4340 16 6 1.4090 -8.7162 -2.8071 17 1 1.0156 -8.0689 -3.5770 18 6 1.6476 -10.0463 -3.0802 19 7 1.3966 -10.5270 -4.2784 20 14 2.3275 -11.1659 -1.7484 21 1 1.2037 -11.7787 -0.9955 22 1 3.1473 -12.2358 -2.3720 23 1 3.1722 -10.3733 -0.8190 24 7 2.3337 -3.6996 -0.0068 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 1.8346 2.1183 -0.0009 29 1 4.3429 -1.7451 0.0004 30 1 -0.2231 -6.5714 0.7503 31 1 0.9226 -7.7418 1.0391 32 1 0.2881 -6.5466 -1.6274 33 1 1.9457 -6.1443 -2.1361 34 1 2.7538 -8.2956 -1.2047 35 1 1.0962 -8.6979 -0.6959 36 1 1.5648 -11.4627 -4.4707 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823099472.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:41 Heat of formation + Delta-G solvation = 67.805149 kcal Electronic energy + Delta-G solvation = -20287.037656 eV Core-core repulsion = 17092.889901 eV Total energy + Delta-G solvation = -3194.147754 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.60586 -39.77939 -38.35721 -36.60549 -35.04104 -33.18086 -32.16298 -32.08253 -28.71251 -28.45575 -26.10506 -25.77993 -23.76482 -22.94628 -21.82167 -19.73449 -19.19226 -18.94614 -18.56673 -18.30939 -17.44737 -16.40651 -16.24595 -15.89063 -15.25810 -15.15426 -14.95869 -14.60891 -14.49588 -14.12529 -13.96452 -13.55988 -13.45424 -13.36275 -13.06922 -12.83176 -12.78348 -12.63080 -12.18948 -12.00986 -11.91761 -11.81469 -11.65440 -11.43575 -11.29384 -10.75744 -9.87762 -9.77955 -9.28818 -8.28550 -6.34802 -0.41297 0.14576 0.56991 0.82152 0.87835 1.40716 1.43559 1.54442 1.69294 1.90387 2.38316 2.39201 2.94005 3.07340 3.59750 3.71251 3.84475 3.92770 4.12985 4.19705 4.38539 4.44072 4.56167 4.64041 4.65652 4.71743 4.80882 4.90695 4.92302 4.95766 5.32491 5.34476 5.43817 5.46469 5.62989 5.93668 6.25483 6.42079 6.74006 7.02680 7.30139 8.88395 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.028806 B = 0.002986 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.798821 B = 9373.483433 C = 9645.393588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.098 4.098 3 C -0.231 4.231 4 S 0.258 5.742 5 C -0.217 4.217 6 C -0.073 4.073 7 C 0.224 3.776 8 N -0.388 5.388 9 O 0.073 5.927 10 C 0.215 3.785 11 C 0.194 3.806 12 H 0.133 0.867 13 N -0.833 5.833 14 C -0.125 4.125 15 C -0.005 4.005 16 C -0.536 4.536 17 H 0.025 0.975 18 C 0.001 3.999 19 N -0.955 5.955 20 Si 0.955 3.045 21 H -0.262 1.262 22 H -0.292 1.292 23 H -0.235 1.235 24 N -0.495 5.495 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.201 0.799 29 H 0.174 0.826 30 H 0.353 0.647 31 H 0.369 0.631 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.030 0.970 35 H 0.038 0.962 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.038 22.396 13.634 26.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 C -0.367 4.367 4 S 0.526 5.474 5 C -0.357 4.357 6 C -0.089 4.089 7 C -0.047 4.047 8 N -0.098 5.098 9 O 0.018 5.982 10 C -0.007 4.007 11 C 0.080 3.920 12 H 0.150 0.850 13 N -0.367 5.367 14 C -0.165 4.165 15 C -0.042 4.042 16 C -0.574 4.574 17 H 0.043 0.957 18 C -0.196 4.196 19 N -0.595 5.595 20 Si 0.777 3.223 21 H -0.186 1.186 22 H -0.218 1.218 23 H -0.158 1.158 24 N -0.229 5.229 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.218 0.782 29 H 0.191 0.809 30 H 0.167 0.833 31 H 0.187 0.813 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.523 24.326 14.077 28.467 hybrid contribution -1.592 -2.602 -1.201 3.279 sum 2.931 21.723 12.875 25.422 Atomic orbital electron populations 1.20616 0.88690 1.03606 1.02727 1.18985 0.98359 0.90698 1.02950 1.25821 0.96753 1.03108 1.10994 1.82837 1.04490 0.93297 1.66792 1.25379 0.98954 1.05040 1.06351 1.16561 0.92939 0.87429 1.11984 1.23837 0.85879 0.94544 1.00481 1.74914 1.18925 0.93275 1.22690 1.85235 1.34114 1.13270 1.65624 1.28967 0.79364 0.99262 0.93072 1.20009 1.00934 0.78569 0.92502 0.84970 1.58951 1.09032 1.19671 1.49045 1.22166 1.01653 0.97718 0.94997 1.19492 0.97447 0.91983 0.95310 1.21423 1.43237 0.95134 0.97627 0.95680 1.26114 0.95278 1.00098 0.98082 1.70091 1.50591 1.15395 1.23452 0.85592 0.79410 0.78065 0.79184 1.18639 1.21800 1.15822 1.71947 1.31232 0.97811 1.21871 0.91332 0.91914 0.89053 0.78237 0.80863 0.83294 0.81347 0.92007 0.93021 0.95142 0.94430 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 9.55 71.23 0.68 -1.31 16 2 C -0.10 -2.15 5.85 -20.68 -0.12 -2.27 16 3 C -0.23 -3.53 10.98 66.68 0.73 -2.80 16 4 S 0.26 3.65 23.09 -56.49 -1.30 2.35 16 5 C -0.22 -4.77 10.67 66.96 0.71 -4.05 16 6 C -0.07 -1.94 5.80 -21.16 -0.12 -2.06 16 7 C 0.22 7.19 7.80 137.19 1.07 8.26 16 8 N -0.39 -12.56 9.50 -58.91 -0.56 -13.12 16 9 O 0.07 2.35 11.27 74.58 0.84 3.19 16 10 C 0.21 6.76 7.30 88.35 0.64 7.40 16 11 C 0.19 5.59 3.35 44.17 0.15 5.74 16 12 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16 13 N -0.83 -20.55 9.17 -171.80 -1.58 -22.13 16 14 C -0.12 -4.45 4.78 30.59 0.15 -4.30 16 15 C 0.00 -0.20 3.81 29.85 0.11 -0.09 16 16 C -0.54 -29.67 9.66 25.60 0.25 -29.42 16 17 H 0.02 1.56 7.99 -2.91 -0.02 1.54 16 18 C 0.00 0.05 5.47 84.65 0.46 0.51 16 19 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 20 Si 0.96 41.58 27.47 68.60 1.88 43.46 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.24 -9.09 6.54 99.48 0.65 -8.44 16 24 N -0.49 -16.37 11.48 -302.31 -3.47 -19.84 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.56 5.89 -2.39 -0.01 1.54 16 27 H 0.09 1.33 8.13 -2.39 -0.02 1.31 16 28 H 0.20 1.70 8.06 -2.91 -0.02 1.68 16 29 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 30 H 0.35 8.20 8.97 -89.70 -0.80 7.39 16 31 H 0.37 8.40 7.55 -89.69 -0.68 7.72 16 32 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.03 1.23 7.20 -2.38 -0.02 1.21 16 35 H 0.04 1.40 6.30 -2.39 -0.02 1.38 16 36 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -69.14 320.73 0.43 -68.71 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -0.40 Total: 20.61 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 4.72 Total: -24.39 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -5.31 Total: -113.94 kcal Atomic # 8 Polarization: 2.35 SS G_CDS: 0.84 Total: 3.19 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.88 Total: 43.46 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.30 Total: 2.35 kcal Total: -69.14 0.43 -68.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823099472.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.519 kcal (2) G-P(sol) polarization free energy of solvation -69.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds