Wall clock time and date at job start Tue Mar 31 2020 06:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33156 * 123.13765 * 2 1 4 4 S 1.75731 * 109.75192 * 180.02562 * 3 2 1 5 5 C 1.70635 * 91.68967 * 359.82115 * 4 3 2 6 6 C 1.34454 * 110.52280 * 0.31373 * 5 4 3 7 7 C 1.48230 * 122.84920 * 179.89583 * 6 5 4 8 8 N 1.30874 * 126.42334 * 179.73010 * 7 6 5 9 9 O 1.21293 * 110.07764 * 179.97438 * 8 7 6 10 10 C 1.33674 * 110.04429 * 0.02562 * 9 8 7 11 11 C 1.50696 * 126.42443 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.47455 * 164.97458 * 11 10 9 13 13 N 1.46899 * 109.47496 * 44.97102 * 11 10 9 14 14 C 1.53002 * 109.46792 * 284.96987 * 11 10 9 15 15 C 1.53007 * 109.46926 * 184.99941 * 14 11 10 16 16 C 1.50700 * 109.46988 * 180.02562 * 15 14 11 17 17 H 1.08009 * 119.99877 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00193 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99551 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00098 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47334 * 89.99933 * 20 18 16 22 22 H 1.48502 * 109.47084 * 209.99801 * 20 18 16 23 23 H 1.48499 * 109.47419 * 329.99636 * 20 18 16 24 24 N 1.30967 * 107.14966 * 359.97438 * 10 9 8 25 25 H 1.08996 * 109.47474 * 269.96696 * 1 2 3 26 26 H 1.09005 * 109.46999 * 29.96291 * 1 2 3 27 27 H 1.09002 * 109.47308 * 149.95799 * 1 2 3 28 28 H 1.08007 * 125.12198 * 0.03506 * 3 2 1 29 29 H 1.08004 * 124.73883 * 180.21822 * 5 4 3 30 30 H 1.00902 * 110.99922 * 176.04291 * 13 11 10 31 31 H 1.00895 * 110.99564 * 300.00151 * 13 11 10 32 32 H 1.08999 * 109.47151 * 304.99957 * 14 11 10 33 33 H 1.09000 * 109.47217 * 65.00415 * 14 11 10 34 34 H 1.08992 * 109.47339 * 300.00382 * 15 14 11 35 35 H 1.08998 * 109.46841 * 60.00753 * 15 14 11 36 36 H 0.97004 * 119.99644 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2348 1.1150 0.0000 4 16 3.9444 0.7082 -0.0007 5 6 3.5985 -0.9627 0.0043 6 6 2.2699 -1.1691 -0.0006 7 6 1.6665 -2.5230 -0.0001 8 7 0.3883 -2.8041 0.0003 9 8 0.2263 -4.0061 0.0001 10 6 1.4096 -4.6279 0.0000 11 6 1.6376 -6.1175 -0.0008 12 1 2.6738 -6.3264 -0.2671 13 7 0.7435 -6.7493 -0.9802 14 6 1.3461 -6.6788 1.3924 15 6 1.6965 -8.1678 1.4259 16 6 1.4088 -8.7208 2.7979 17 1 1.0150 -8.0749 3.5688 18 6 1.6482 -10.0513 3.0692 19 7 2.1281 -10.8376 2.1306 20 14 1.2909 -10.7368 4.7696 21 1 -0.1072 -11.2349 4.8189 22 1 2.2250 -11.8544 5.0591 23 1 1.4710 -9.6663 5.7829 24 7 2.3335 -3.6998 -0.0003 25 1 -0.3634 -0.0006 1.0276 26 1 -0.3633 0.8904 -0.5133 27 1 -0.3634 -0.8896 -0.5145 28 1 1.8348 2.1182 0.0005 29 1 4.3428 -1.7453 0.0091 30 1 0.9219 -7.7403 -1.0462 31 1 -0.2236 -6.5702 -0.7550 32 1 1.9464 -6.1476 2.1310 33 1 0.2886 -6.5491 1.6224 34 1 1.0963 -8.6990 0.6873 35 1 2.7540 -8.2975 1.1960 36 1 2.2963 -11.7737 2.3213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823099474.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:45 Heat of formation + Delta-G solvation = 85.726573 kcal Electronic energy + Delta-G solvation = -20236.355977 eV Core-core repulsion = 17042.985354 eV Total energy + Delta-G solvation = -3193.370623 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.34535 -38.90936 -36.86139 -35.35476 -33.16062 -31.76263 -31.30034 -30.07770 -27.82568 -26.62888 -25.01593 -24.21559 -22.64912 -21.76412 -20.37175 -18.65733 -17.86758 -17.77257 -17.25156 -16.56877 -15.91679 -15.41706 -14.60128 -14.43916 -14.31922 -13.77978 -13.52438 -13.39811 -13.27430 -12.71949 -12.56824 -12.49331 -12.21709 -11.99504 -11.76770 -11.60948 -11.17497 -11.15107 -10.98092 -10.83759 -10.65229 -10.21374 -10.05182 -9.63151 -9.30491 -8.96846 -8.57694 -8.46818 -8.43750 -6.12125 -4.15285 0.53622 1.29995 1.33438 1.66588 1.89762 2.96576 2.98633 3.25849 3.32829 3.36102 3.56753 4.10613 4.37225 4.61904 4.79310 4.95508 5.09470 5.23356 5.24491 5.28658 5.44306 5.52940 5.55841 5.68511 5.76694 5.81910 5.99649 6.17813 6.23799 6.32496 6.40700 6.76162 7.19182 7.43109 7.55308 7.61588 7.84663 8.25954 8.28295 8.90163 9.49957 10.98832 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026289 B = 0.002900 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.839416 B = 9651.888911 C = 9920.440293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.072 4.072 3 C -0.241 4.241 4 S 0.185 5.815 5 C -0.200 4.200 6 C -0.037 4.037 7 C 0.228 3.772 8 N -0.380 5.380 9 O 0.078 5.922 10 C 0.221 3.779 11 C 0.180 3.820 12 H 0.123 0.877 13 N -0.840 5.840 14 C -0.143 4.143 15 C 0.025 3.975 16 C -0.525 4.525 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 N -0.482 5.482 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.169 0.831 29 H 0.177 0.823 30 H 0.366 0.634 31 H 0.344 0.656 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.020 0.980 35 H 0.022 0.978 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 21.388 -6.218 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.084 4.084 3 C -0.376 4.376 4 S 0.451 5.549 5 C -0.340 4.340 6 C -0.053 4.053 7 C -0.044 4.044 8 N -0.089 5.089 9 O 0.021 5.979 10 C 0.000 4.000 11 C 0.066 3.934 12 H 0.141 0.859 13 N -0.373 5.373 14 C -0.183 4.183 15 C -0.012 4.012 16 C -0.563 4.563 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 N -0.215 5.215 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.187 0.813 29 H 0.194 0.806 30 H 0.184 0.816 31 H 0.157 0.843 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.772 23.278 -6.807 24.317 hybrid contribution -1.756 -2.101 1.817 3.286 sum 0.016 21.177 -4.990 21.757 Atomic orbital electron populations 1.20659 0.88842 1.03537 1.02928 1.18886 0.97907 0.90595 1.01030 1.25384 0.96265 1.02409 1.13584 1.83062 1.05735 0.96657 1.69400 1.25166 0.99547 1.02593 1.06679 1.16263 0.91853 0.87886 1.09301 1.23312 0.85985 0.93631 1.01467 1.74889 1.18624 0.93488 1.21940 1.85251 1.34176 1.13059 1.65459 1.29003 0.79146 0.99185 0.92703 1.20245 1.00116 0.78599 0.94435 0.85923 1.58973 1.08541 1.19851 1.49961 1.22543 1.01590 1.01163 0.93015 1.19103 0.97277 0.87086 0.97716 1.21146 1.43577 0.94592 0.96996 0.92626 1.25001 0.94998 0.97118 0.97136 1.69944 1.44473 1.05816 1.32893 0.86568 0.78168 0.78732 0.84419 1.20584 1.21122 1.19858 1.71968 1.30782 0.97282 1.21516 0.90955 0.91499 0.89679 0.81316 0.80583 0.81618 0.84317 0.91980 0.92158 0.96167 0.95977 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 9.55 36.00 0.34 -0.73 16 2 C -0.07 -0.85 5.85 -105.89 -0.62 -1.47 16 3 C -0.24 -2.23 10.98 28.96 0.32 -1.91 16 4 S 0.18 1.61 23.09 -107.50 -2.48 -0.88 16 5 C -0.20 -2.36 10.67 29.40 0.31 -2.05 16 6 C -0.04 -0.52 5.80 -106.62 -0.62 -1.14 16 7 C 0.23 3.71 7.80 -156.07 -1.22 2.49 16 8 N -0.38 -6.19 9.50 31.00 0.29 -5.90 16 9 O 0.08 1.28 11.27 18.02 0.20 1.48 16 10 C 0.22 3.65 7.30 -12.98 -0.09 3.55 16 11 C 0.18 2.89 3.35 -68.87 -0.23 2.66 16 12 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 13 N -0.84 -12.24 9.17 -5.65 -0.05 -12.30 16 14 C -0.14 -2.68 4.78 -26.73 -0.13 -2.81 16 15 C 0.03 0.59 4.74 -27.88 -0.13 0.46 16 16 C -0.52 -14.08 9.11 -34.44 -0.31 -14.40 16 17 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 20 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 N -0.48 -8.23 11.48 -9.86 -0.11 -8.34 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.56 8.13 -51.93 -0.42 0.13 16 27 H 0.08 1.06 5.89 -51.93 -0.31 0.76 16 28 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 29 H 0.18 2.01 8.06 -52.48 -0.42 1.58 16 30 H 0.37 5.38 7.55 -39.29 -0.30 5.09 16 31 H 0.34 4.66 8.97 -39.29 -0.35 4.31 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.02 0.47 6.87 -51.93 -0.36 0.12 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -29.70 324.32 -8.26 -37.96 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.23 Total: 5.68 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -2.48 Total: -13.81 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.87 Total: -51.31 kcal Atomic # 8 Polarization: 1.28 SS G_CDS: 0.20 Total: 1.48 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.48 Total: -0.88 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.70 -8.26 -37.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823099474.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.685 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds