Wall clock time and date at job start Tue Mar 31 2020 06:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33156 * 123.13765 * 2 1 4 4 S 1.75731 * 109.75192 * 180.02562 * 3 2 1 5 5 C 1.70635 * 91.68967 * 359.82115 * 4 3 2 6 6 C 1.34454 * 110.52280 * 0.31373 * 5 4 3 7 7 C 1.48230 * 122.84920 * 179.89583 * 6 5 4 8 8 N 1.30874 * 126.42334 * 179.73010 * 7 6 5 9 9 O 1.21293 * 110.07764 * 179.97438 * 8 7 6 10 10 C 1.33674 * 110.04429 * 0.02562 * 9 8 7 11 11 C 1.50696 * 126.42443 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.47455 * 164.97458 * 11 10 9 13 13 N 1.46899 * 109.47496 * 44.97102 * 11 10 9 14 14 C 1.53002 * 109.46792 * 284.96987 * 11 10 9 15 15 C 1.53007 * 109.46926 * 184.99941 * 14 11 10 16 16 C 1.50700 * 109.46988 * 180.02562 * 15 14 11 17 17 H 1.08009 * 119.99877 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00193 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99551 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00098 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47334 * 89.99933 * 20 18 16 22 22 H 1.48502 * 109.47084 * 209.99801 * 20 18 16 23 23 H 1.48499 * 109.47419 * 329.99636 * 20 18 16 24 24 N 1.30967 * 107.14966 * 359.97438 * 10 9 8 25 25 H 1.08996 * 109.47474 * 269.96696 * 1 2 3 26 26 H 1.09005 * 109.46999 * 29.96291 * 1 2 3 27 27 H 1.09002 * 109.47308 * 149.95799 * 1 2 3 28 28 H 1.08007 * 125.12198 * 0.03506 * 3 2 1 29 29 H 1.08004 * 124.73883 * 180.21822 * 5 4 3 30 30 H 1.00902 * 110.99922 * 176.04291 * 13 11 10 31 31 H 1.00895 * 110.99564 * 300.00151 * 13 11 10 32 32 H 1.08999 * 109.47151 * 304.99957 * 14 11 10 33 33 H 1.09000 * 109.47217 * 65.00415 * 14 11 10 34 34 H 1.08992 * 109.47339 * 300.00382 * 15 14 11 35 35 H 1.08998 * 109.46841 * 60.00753 * 15 14 11 36 36 H 0.97004 * 119.99644 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2348 1.1150 0.0000 4 16 3.9444 0.7082 -0.0007 5 6 3.5985 -0.9627 0.0043 6 6 2.2699 -1.1691 -0.0006 7 6 1.6665 -2.5230 -0.0001 8 7 0.3883 -2.8041 0.0003 9 8 0.2263 -4.0061 0.0001 10 6 1.4096 -4.6279 0.0000 11 6 1.6376 -6.1175 -0.0008 12 1 2.6738 -6.3264 -0.2671 13 7 0.7435 -6.7493 -0.9802 14 6 1.3461 -6.6788 1.3924 15 6 1.6965 -8.1678 1.4259 16 6 1.4088 -8.7208 2.7979 17 1 1.0150 -8.0749 3.5688 18 6 1.6482 -10.0513 3.0692 19 7 2.1281 -10.8376 2.1306 20 14 1.2909 -10.7368 4.7696 21 1 -0.1072 -11.2349 4.8189 22 1 2.2250 -11.8544 5.0591 23 1 1.4710 -9.6663 5.7829 24 7 2.3335 -3.6998 -0.0003 25 1 -0.3634 -0.0006 1.0276 26 1 -0.3633 0.8904 -0.5133 27 1 -0.3634 -0.8896 -0.5145 28 1 1.8348 2.1182 0.0005 29 1 4.3428 -1.7453 0.0091 30 1 0.9219 -7.7403 -1.0462 31 1 -0.2236 -6.5702 -0.7550 32 1 1.9464 -6.1476 2.1310 33 1 0.2886 -6.5491 1.6224 34 1 1.0963 -8.6990 0.6873 35 1 2.7540 -8.2975 1.1960 36 1 2.2963 -11.7737 2.3213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823099474.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:45 Heat of formation + Delta-G solvation = 65.874357 kcal Electronic energy + Delta-G solvation = -20237.216834 eV Core-core repulsion = 17042.985354 eV Total energy + Delta-G solvation = -3194.231480 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.59896 -39.77630 -38.30032 -36.59829 -35.09100 -33.08762 -32.15692 -31.75476 -28.67895 -28.22113 -26.10870 -25.88285 -23.81421 -23.09916 -21.85459 -19.69762 -19.13968 -18.72780 -18.53454 -18.21034 -17.36655 -16.47814 -16.37721 -15.84944 -15.20898 -15.08725 -14.98908 -14.53296 -14.22797 -14.06651 -13.88368 -13.48982 -13.43325 -13.33766 -12.99807 -12.83120 -12.79030 -12.64795 -12.50592 -12.15322 -11.85262 -11.82962 -11.60423 -11.38543 -11.20565 -10.55102 -9.86657 -9.77525 -9.28472 -8.21271 -6.30869 -0.41234 0.14610 0.57193 0.82672 0.88241 1.40459 1.41407 1.51607 1.68611 1.90689 2.37870 2.42822 2.94214 3.13047 3.61107 3.74027 3.85017 3.99366 4.15618 4.20739 4.39116 4.47187 4.57483 4.66443 4.72432 4.76477 4.84059 4.92577 4.95849 5.04638 5.33057 5.44814 5.46889 5.65398 5.80518 5.94403 6.21130 6.40985 6.83946 7.02818 7.38091 8.89548 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026289 B = 0.002900 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.839416 B = 9651.888911 C = 9920.440293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.098 4.098 3 C -0.231 4.231 4 S 0.259 5.741 5 C -0.218 4.218 6 C -0.072 4.072 7 C 0.225 3.775 8 N -0.387 5.387 9 O 0.074 5.926 10 C 0.217 3.783 11 C 0.194 3.806 12 H 0.123 0.877 13 N -0.832 5.832 14 C -0.127 4.127 15 C 0.031 3.969 16 C -0.546 4.546 17 H 0.054 0.946 18 C 0.007 3.993 19 N -0.925 5.925 20 Si 0.957 3.043 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.269 1.269 24 N -0.497 5.497 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.201 0.799 29 H 0.173 0.827 30 H 0.367 0.633 31 H 0.352 0.648 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.016 0.984 35 H 0.001 0.999 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.312 23.476 -5.884 24.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 C -0.366 4.366 4 S 0.526 5.474 5 C -0.358 4.358 6 C -0.089 4.089 7 C -0.047 4.047 8 N -0.097 5.097 9 O 0.018 5.982 10 C -0.004 4.004 11 C 0.080 3.920 12 H 0.140 0.860 13 N -0.366 5.366 14 C -0.167 4.167 15 C -0.006 4.006 16 C -0.584 4.584 17 H 0.072 0.928 18 C -0.191 4.191 19 N -0.565 5.565 20 Si 0.782 3.218 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.193 1.193 24 N -0.230 5.230 25 H 0.088 0.912 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.218 0.782 29 H 0.190 0.810 30 H 0.184 0.816 31 H 0.166 0.834 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.019 0.981 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.850 25.371 -6.476 26.250 hybrid contribution -1.699 -2.624 1.683 3.550 sum 0.151 22.747 -4.794 23.247 Atomic orbital electron populations 1.20618 0.88637 1.03589 1.02777 1.18983 0.98385 0.90644 1.02950 1.25821 0.96711 1.03116 1.10970 1.82825 1.04534 0.93215 1.66802 1.25378 0.98976 1.05072 1.06401 1.16565 0.92930 0.87407 1.11952 1.23849 0.85889 0.94516 1.00451 1.74904 1.18867 0.93233 1.22741 1.85235 1.34032 1.13284 1.65656 1.28921 0.79390 0.99103 0.92975 1.19960 1.00439 0.78629 0.92975 0.85973 1.58956 1.08881 1.19756 1.49056 1.22285 1.01553 0.98239 0.94657 1.18962 0.95776 0.89791 0.96110 1.21599 1.43297 0.95005 0.98466 0.92778 1.25819 0.94890 0.97589 1.00843 1.70049 1.45499 1.06129 1.34785 0.85567 0.78221 0.78018 0.79978 1.19777 1.20789 1.19343 1.71959 1.31253 0.97867 1.21952 0.91223 0.89045 0.91963 0.78169 0.80986 0.81558 0.83439 0.92856 0.91688 0.96526 0.98093 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 9.55 71.23 0.68 -1.31 16 2 C -0.10 -2.17 5.85 -20.68 -0.12 -2.29 16 3 C -0.23 -3.56 10.98 66.68 0.73 -2.83 16 4 S 0.26 3.75 23.09 -56.49 -1.30 2.44 16 5 C -0.22 -4.93 10.67 66.95 0.71 -4.21 16 6 C -0.07 -1.96 5.80 -21.16 -0.12 -2.09 16 7 C 0.22 7.38 7.80 137.19 1.07 8.45 16 8 N -0.39 -12.78 9.50 -58.92 -0.56 -13.34 16 9 O 0.07 2.43 11.27 74.56 0.84 3.27 16 10 C 0.22 7.25 7.30 88.35 0.64 7.89 16 11 C 0.19 6.29 3.35 44.17 0.15 6.44 16 12 H 0.12 4.00 8.14 -2.39 -0.02 3.98 16 13 N -0.83 -24.14 9.17 -171.80 -1.58 -25.72 16 14 C -0.13 -4.82 4.78 30.60 0.15 -4.67 16 15 C 0.03 1.46 4.74 29.85 0.14 1.60 16 16 C -0.55 -29.50 9.11 25.60 0.23 -29.27 16 17 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 18 C 0.01 0.40 5.46 84.65 0.46 0.87 16 19 N -0.92 -53.36 13.29 21.45 0.28 -53.07 16 20 Si 0.96 43.04 29.54 68.60 2.03 45.07 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 N -0.50 -17.17 11.48 -302.32 -3.47 -20.64 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.09 1.33 8.13 -2.38 -0.02 1.32 16 27 H 0.06 1.56 5.89 -2.39 -0.01 1.55 16 28 H 0.20 1.71 8.06 -2.91 -0.02 1.69 16 29 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 30 H 0.37 10.78 7.55 -89.69 -0.68 10.10 16 31 H 0.35 9.38 8.97 -89.70 -0.80 8.58 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.02 0.79 6.87 -2.39 -0.02 0.77 16 35 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -63.79 324.32 0.62 -63.17 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -0.35 Total: 20.24 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 4.73 Total: -21.42 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -5.32 Total: -112.77 kcal Atomic # 8 Polarization: 2.43 SS G_CDS: 0.84 Total: 3.27 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.30 Total: 2.44 kcal Total: -63.79 0.62 -63.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823099474.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.045 kcal (2) G-P(sol) polarization free energy of solvation -63.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds