Wall clock time and date at job start Tue Mar 31 2020 06:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37819 * 122.63633 * 2 1 4 4 C 1.33730 * 115.06711 * 179.80693 * 3 2 1 5 5 S 1.75854 * 109.74581 * 0.43978 * 4 3 2 6 6 C 1.34864 * 122.63565 * 180.29111 * 2 1 3 7 7 C 1.47722 * 125.27146 * 359.97438 * 6 2 1 8 8 N 1.31037 * 126.45469 * 359.68458 * 7 6 2 9 9 O 1.21284 * 110.04620 * 179.80523 * 8 7 6 10 10 C 1.33682 * 110.08278 * 0.47051 * 9 8 7 11 11 C 1.50697 * 126.40425 * 179.69143 * 10 9 8 12 12 H 1.08997 * 109.47474 * 165.02096 * 11 10 9 13 13 N 1.46895 * 109.47386 * 45.01833 * 11 10 9 14 14 C 1.53002 * 109.47303 * 285.02169 * 11 10 9 15 15 C 1.52992 * 109.47486 * 185.00018 * 14 11 10 16 16 C 1.50707 * 109.47177 * 179.97438 * 15 14 11 17 17 H 1.08000 * 119.99902 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00007 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99764 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00208 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47108 * 89.99468 * 20 18 16 22 22 H 1.48491 * 109.47277 * 209.99650 * 20 18 16 23 23 H 1.48498 * 109.46762 * 329.99675 * 20 18 16 24 24 N 1.30932 * 107.19628 * 359.70673 * 10 9 8 25 25 H 1.09002 * 109.47152 * 269.70873 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.70973 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.70954 * 1 2 3 28 28 H 1.07995 * 122.46833 * 0.02562 * 3 2 1 29 29 H 1.07996 * 125.12501 * 180.18770 * 4 3 2 30 30 H 1.00900 * 111.00301 * 300.00179 * 13 11 10 31 31 H 1.00903 * 110.99947 * 63.95452 * 13 11 10 32 32 H 1.09003 * 109.46747 * 304.99974 * 14 11 10 33 33 H 1.08999 * 109.47134 * 64.99327 * 14 11 10 34 34 H 1.08999 * 109.47551 * 299.99911 * 15 14 11 35 35 H 1.09005 * 109.47334 * 60.00417 * 15 14 11 36 36 H 0.97004 * 119.99670 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2503 1.1606 0.0000 4 6 3.5759 0.9844 0.0041 5 16 3.9469 -0.7345 -0.0044 6 6 2.2343 -1.1357 -0.0058 7 6 1.6787 -2.5044 -0.0122 8 7 0.4093 -2.8295 -0.0075 9 8 0.2892 -4.0363 -0.0190 10 6 1.4931 -4.6175 -0.0223 11 6 1.7712 -6.0985 -0.0291 12 1 2.8138 -6.2713 -0.2960 13 7 0.8989 -6.7561 -1.0113 14 6 1.4986 -6.6752 1.3616 15 6 1.8988 -8.1515 1.3891 16 6 1.6309 -8.7193 2.7592 17 1 1.2169 -8.0898 3.5330 18 6 1.9142 -10.0422 3.0247 19 7 1.6808 -10.5375 4.2205 20 14 2.6309 -11.1308 1.6865 21 1 4.1136 -11.0617 1.7334 22 1 2.1937 -12.5334 1.9023 23 1 2.1553 -10.6625 0.3600 24 7 2.3854 -3.6594 -0.0180 25 1 -0.3633 -0.0052 1.0277 26 1 -0.3633 -0.8874 -0.5183 27 1 -0.3633 0.8926 -0.5093 28 1 1.7957 2.1402 0.0004 29 1 4.3082 1.7782 0.0076 30 1 -0.0737 -6.6106 -0.7857 31 1 1.1045 -6.4390 -1.9469 32 1 2.0805 -6.1271 2.1026 33 1 0.4373 -6.5820 1.5919 34 1 1.3170 -8.6997 0.6482 35 1 2.9602 -8.2446 1.1590 36 1 1.8805 -11.4681 4.4074 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823225192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:09 Heat of formation + Delta-G solvation = 92.813436 kcal Electronic energy + Delta-G solvation = -20224.619741 eV Core-core repulsion = 17031.556427 eV Total energy + Delta-G solvation = -3193.063313 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.55467 -38.74411 -36.91545 -35.73349 -33.14984 -32.28036 -30.75755 -30.54368 -28.43696 -26.90989 -24.39933 -24.10779 -23.05223 -21.68528 -20.22146 -18.64557 -18.22818 -18.07736 -16.91714 -16.65173 -16.07425 -15.78903 -15.13387 -14.37691 -14.33747 -14.00784 -13.93571 -13.37946 -12.86670 -12.72485 -12.55640 -12.52600 -12.46135 -12.01363 -11.86900 -11.73878 -11.24706 -11.13642 -10.95789 -10.90941 -10.53993 -10.03878 -9.81523 -9.63449 -9.16982 -9.01263 -8.81922 -8.64021 -8.48791 -6.00402 -3.98677 0.21446 1.16832 1.18921 1.65042 2.01620 2.64256 2.75863 3.33816 3.36386 3.43835 3.50167 3.98695 4.50392 4.55036 4.56642 4.74270 5.01792 5.05689 5.20525 5.23182 5.34878 5.42895 5.45243 5.59784 5.64505 5.70720 5.81937 6.07806 6.17507 6.24645 6.37171 6.78598 6.97730 7.30753 7.35935 7.51996 7.83001 8.05421 8.55934 9.03924 9.61908 11.13012 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.028381 B = 0.003101 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.346247 B = 9028.548426 C = 9295.225096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.060 4.060 3 C -0.137 4.137 4 C -0.209 4.209 5 S 0.185 5.815 6 C -0.137 4.137 7 C 0.238 3.762 8 N -0.371 5.371 9 O 0.077 5.923 10 C 0.169 3.831 11 C 0.182 3.818 12 H 0.126 0.874 13 N -0.816 5.816 14 C -0.094 4.094 15 C -0.003 4.003 16 C -0.523 4.523 17 H 0.069 0.931 18 C 0.066 3.934 19 N -0.906 5.906 20 Si 0.879 3.121 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.259 1.259 24 N -0.479 5.479 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.171 0.829 30 H 0.352 0.648 31 H 0.342 0.658 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.011 0.989 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.937 22.703 -12.544 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.077 4.077 3 C -0.168 4.168 4 C -0.347 4.347 5 S 0.451 5.549 6 C -0.256 4.256 7 C -0.033 4.033 8 N -0.081 5.081 9 O 0.019 5.981 10 C -0.055 4.055 11 C 0.067 3.933 12 H 0.143 0.857 13 N -0.344 5.344 14 C -0.133 4.133 15 C -0.041 4.041 16 C -0.561 4.561 17 H 0.088 0.912 18 C -0.135 4.135 19 N -0.545 5.545 20 Si 0.707 3.293 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.183 1.183 24 N -0.212 5.212 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.164 0.836 29 H 0.189 0.811 30 H 0.166 0.834 31 H 0.155 0.845 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.030 0.970 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.427 21.713 -12.203 25.025 hybrid contribution -1.160 1.131 -0.646 1.744 sum 1.267 22.844 -12.849 26.240 Atomic orbital electron populations 1.20711 0.89020 1.03505 1.03018 1.19133 0.98011 0.90711 0.99825 1.19899 0.92766 0.99112 1.04989 1.26014 1.00020 1.00117 1.08515 1.84505 1.01798 0.98321 1.70281 1.21144 0.97687 0.90440 1.16323 1.22701 0.85858 0.92971 1.01734 1.74985 1.18852 0.92691 1.21557 1.85255 1.33645 1.13632 1.65592 1.31013 0.79185 1.01575 0.93712 1.20895 1.00094 0.74754 0.97526 0.85653 1.58853 1.09253 1.61543 1.04792 1.21661 1.02014 0.99741 0.89871 1.19485 0.96270 0.90158 0.98169 1.21140 1.42756 0.96027 0.96129 0.91245 1.25012 0.95141 0.97987 0.95333 1.69925 1.49003 1.14687 1.20845 0.86771 0.79550 0.79626 0.83383 1.20451 1.21610 1.18344 1.72096 1.31178 0.96946 1.21004 0.90675 0.90001 0.91217 0.83596 0.81113 0.83409 0.84533 0.91657 0.91691 0.94544 0.97028 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 9.59 36.01 0.35 -0.69 16 2 C -0.06 -0.67 5.83 -105.97 -0.62 -1.29 16 3 C -0.14 -1.20 9.96 -41.32 -0.41 -1.61 16 4 C -0.21 -1.72 11.23 29.15 0.33 -1.40 16 5 S 0.18 2.01 23.31 -107.50 -2.51 -0.50 16 6 C -0.14 -1.82 6.44 -36.91 -0.24 -2.06 16 7 C 0.24 3.65 7.91 -156.04 -1.23 2.42 16 8 N -0.37 -5.64 9.68 30.98 0.30 -5.34 16 9 O 0.08 1.14 11.27 18.01 0.20 1.34 16 10 C 0.17 2.51 7.28 -12.98 -0.09 2.41 16 11 C 0.18 2.68 3.29 -68.87 -0.23 2.45 16 12 H 0.13 1.80 8.14 -51.93 -0.42 1.38 16 13 N -0.82 -10.45 8.67 -5.66 -0.05 -10.50 16 14 C -0.09 -1.74 4.78 -26.73 -0.13 -1.87 16 15 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 16 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 17 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.91 -27.96 13.96 55.43 0.77 -27.18 16 20 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 24 N -0.48 -7.63 11.58 -9.88 -0.11 -7.75 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 0.95 5.98 -51.93 -0.31 0.64 16 27 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 29 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.35 4.16 8.97 -39.29 -0.35 3.81 16 31 H 0.34 3.52 9.06 -39.29 -0.36 3.17 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.04 0.83 6.81 -51.93 -0.35 0.48 16 35 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 323.57 15.07 4.88 4.88 Total: -1.00 -32.32 323.57 -8.31 -40.63 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -4.31 Total: 2.52 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -2.82 Total: -14.99 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.91 Total: -50.77 kcal Atomic # 8 Polarization: 1.14 SS G_CDS: 0.20 Total: 1.34 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.51 Total: -0.50 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.32 -8.31 -40.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823225192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.446 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds