Wall clock time and date at job start Tue Mar 31 2020 06:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37819 * 122.63633 * 2 1 4 4 C 1.33730 * 115.06711 * 179.80693 * 3 2 1 5 5 S 1.75854 * 109.74581 * 0.43978 * 4 3 2 6 6 C 1.34864 * 122.63565 * 180.29111 * 2 1 3 7 7 C 1.47722 * 125.27146 * 359.97438 * 6 2 1 8 8 N 1.31037 * 126.45469 * 359.68458 * 7 6 2 9 9 O 1.21284 * 110.04620 * 179.80523 * 8 7 6 10 10 C 1.33682 * 110.08278 * 0.47051 * 9 8 7 11 11 C 1.50697 * 126.40425 * 179.69143 * 10 9 8 12 12 H 1.08997 * 109.47474 * 165.02096 * 11 10 9 13 13 N 1.46895 * 109.47386 * 45.01833 * 11 10 9 14 14 C 1.53002 * 109.47303 * 285.02169 * 11 10 9 15 15 C 1.52992 * 109.47486 * 185.00018 * 14 11 10 16 16 C 1.50707 * 109.47177 * 179.97438 * 15 14 11 17 17 H 1.08000 * 119.99902 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00007 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99764 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00208 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47108 * 89.99468 * 20 18 16 22 22 H 1.48491 * 109.47277 * 209.99650 * 20 18 16 23 23 H 1.48498 * 109.46762 * 329.99675 * 20 18 16 24 24 N 1.30932 * 107.19628 * 359.70673 * 10 9 8 25 25 H 1.09002 * 109.47152 * 269.70873 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.70973 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.70954 * 1 2 3 28 28 H 1.07995 * 122.46833 * 0.02562 * 3 2 1 29 29 H 1.07996 * 125.12501 * 180.18770 * 4 3 2 30 30 H 1.00900 * 111.00301 * 300.00179 * 13 11 10 31 31 H 1.00903 * 110.99947 * 63.95452 * 13 11 10 32 32 H 1.09003 * 109.46747 * 304.99974 * 14 11 10 33 33 H 1.08999 * 109.47134 * 64.99327 * 14 11 10 34 34 H 1.08999 * 109.47551 * 299.99911 * 15 14 11 35 35 H 1.09005 * 109.47334 * 60.00417 * 15 14 11 36 36 H 0.97004 * 119.99670 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2503 1.1606 0.0000 4 6 3.5759 0.9844 0.0041 5 16 3.9469 -0.7345 -0.0044 6 6 2.2343 -1.1357 -0.0058 7 6 1.6787 -2.5044 -0.0122 8 7 0.4093 -2.8295 -0.0075 9 8 0.2892 -4.0363 -0.0190 10 6 1.4931 -4.6175 -0.0223 11 6 1.7712 -6.0985 -0.0291 12 1 2.8138 -6.2713 -0.2960 13 7 0.8989 -6.7561 -1.0113 14 6 1.4986 -6.6752 1.3616 15 6 1.8988 -8.1515 1.3891 16 6 1.6309 -8.7193 2.7592 17 1 1.2169 -8.0898 3.5330 18 6 1.9142 -10.0422 3.0247 19 7 1.6808 -10.5375 4.2205 20 14 2.6309 -11.1308 1.6865 21 1 4.1136 -11.0617 1.7334 22 1 2.1937 -12.5334 1.9023 23 1 2.1553 -10.6625 0.3600 24 7 2.3854 -3.6594 -0.0180 25 1 -0.3633 -0.0052 1.0277 26 1 -0.3633 -0.8874 -0.5183 27 1 -0.3633 0.8926 -0.5093 28 1 1.7957 2.1402 0.0004 29 1 4.3082 1.7782 0.0076 30 1 -0.0737 -6.6106 -0.7857 31 1 1.1045 -6.4390 -1.9469 32 1 2.0805 -6.1271 2.1026 33 1 0.4373 -6.5820 1.5919 34 1 1.3170 -8.6997 0.6482 35 1 2.9602 -8.2446 1.1590 36 1 1.8805 -11.4681 4.4074 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823225192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:08 Heat of formation + Delta-G solvation = 69.469637 kcal Electronic energy + Delta-G solvation = -20225.632004 eV Core-core repulsion = 17031.556427 eV Total energy + Delta-G solvation = -3194.075577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.69445 -39.52962 -38.21517 -36.86318 -35.08102 -33.47106 -32.39139 -31.46099 -29.31920 -28.49877 -25.70665 -25.30906 -23.97272 -22.98326 -21.79559 -19.68767 -19.25899 -19.07255 -18.78160 -17.85438 -17.26377 -16.79724 -16.31432 -15.93289 -15.49951 -15.19140 -14.87529 -14.69618 -14.26718 -14.10286 -13.90907 -13.49469 -13.44740 -13.23690 -12.90536 -12.80608 -12.76855 -12.60516 -12.25106 -12.01935 -11.79708 -11.76153 -11.59569 -11.34794 -11.16506 -10.69925 -10.09495 -9.66848 -9.45210 -8.23145 -6.26967 -0.66357 0.08083 0.36279 0.91060 1.09748 1.44046 1.46264 1.59338 1.60173 1.74888 2.29790 2.44065 2.89671 3.13773 3.48185 3.69721 3.89559 3.92760 4.16610 4.25323 4.28654 4.42246 4.57522 4.64306 4.68733 4.73491 4.84184 4.94057 5.01307 5.11035 5.31223 5.41111 5.49259 5.66073 5.74009 5.93896 6.33489 6.44254 6.81812 6.92055 7.37590 8.93863 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.028381 B = 0.003101 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.346247 B = 9028.548426 C = 9295.225096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.052 4.052 3 C -0.146 4.146 4 C -0.180 4.180 5 S 0.158 5.842 6 C -0.185 4.185 7 C 0.234 3.766 8 N -0.382 5.382 9 O 0.074 5.926 10 C 0.171 3.829 11 C 0.199 3.801 12 H 0.134 0.866 13 N -0.816 5.816 14 C -0.087 4.087 15 C 0.003 3.997 16 C -0.532 4.532 17 H 0.027 0.973 18 C 0.001 3.999 19 N -0.957 5.957 20 Si 0.953 3.047 21 H -0.270 1.270 22 H -0.290 1.290 23 H -0.235 1.235 24 N -0.496 5.496 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.180 0.820 29 H 0.208 0.792 30 H 0.358 0.642 31 H 0.359 0.641 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.020 0.980 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.699 24.495 -14.848 28.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.070 4.070 3 C -0.175 4.175 4 C -0.317 4.317 5 S 0.424 5.576 6 C -0.304 4.304 7 C -0.036 4.036 8 N -0.092 5.092 9 O 0.017 5.983 10 C -0.053 4.053 11 C 0.084 3.916 12 H 0.152 0.848 13 N -0.347 5.347 14 C -0.126 4.126 15 C -0.034 4.034 16 C -0.571 4.571 17 H 0.045 0.955 18 C -0.195 4.195 19 N -0.598 5.598 20 Si 0.776 3.224 21 H -0.195 1.195 22 H -0.216 1.216 23 H -0.158 1.158 24 N -0.230 5.230 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.197 0.803 29 H 0.225 0.775 30 H 0.173 0.827 31 H 0.174 0.826 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.038 0.962 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.172 23.518 -14.533 27.828 hybrid contribution -1.433 0.745 0.154 1.622 sum 1.739 24.263 -14.380 28.258 Atomic orbital electron populations 1.20748 0.88553 1.03943 1.03058 1.19528 0.98637 0.91054 0.97769 1.20212 0.92815 0.99568 1.04910 1.26466 1.00651 0.98953 1.05619 1.84537 1.01083 1.01071 1.70960 1.21370 0.99004 0.90084 1.19920 1.23128 0.85778 0.93819 1.00887 1.74983 1.19043 0.92673 1.22551 1.85233 1.33563 1.13708 1.65749 1.30960 0.79228 1.01471 0.93592 1.20533 1.00942 0.74516 0.95612 0.84806 1.58827 1.09451 1.61055 1.05405 1.21417 1.01452 0.97385 0.92307 1.19366 0.96772 0.92423 0.94863 1.21552 1.41832 0.95890 0.97779 0.95497 1.26044 0.95706 0.99823 0.97931 1.70092 1.50926 1.15298 1.23498 0.85617 0.78934 0.77057 0.80819 1.19478 1.21574 1.15797 1.72085 1.31744 0.97507 1.21616 0.90698 0.91904 0.88422 0.80304 0.77480 0.82740 0.82587 0.92991 0.92094 0.93831 0.96172 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 9.59 71.24 0.68 -1.26 16 2 C -0.05 -1.09 5.83 -20.74 -0.12 -1.21 16 3 C -0.15 -2.08 9.96 21.15 0.21 -1.87 16 4 C -0.18 -2.38 11.23 66.80 0.75 -1.63 16 5 S 0.16 3.27 23.31 -56.49 -1.32 1.96 16 6 C -0.19 -4.83 6.44 24.00 0.15 -4.68 16 7 C 0.23 7.22 7.91 136.95 1.08 8.31 16 8 N -0.38 -11.70 9.68 -58.80 -0.57 -12.26 16 9 O 0.07 2.20 11.27 74.50 0.84 3.04 16 10 C 0.17 5.04 7.28 88.35 0.64 5.69 16 11 C 0.20 5.64 3.29 44.17 0.15 5.78 16 12 H 0.13 3.61 8.14 -2.39 -0.02 3.59 16 13 N -0.82 -19.37 8.67 -171.81 -1.49 -20.86 16 14 C -0.09 -3.20 4.78 30.59 0.15 -3.06 16 15 C 0.00 0.15 3.93 29.85 0.12 0.26 16 16 C -0.53 -30.55 9.66 25.60 0.25 -30.31 16 17 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 18 C 0.00 0.06 5.47 84.65 0.46 0.52 16 19 N -0.96 -60.75 13.96 21.45 0.30 -60.46 16 20 Si 0.95 44.06 27.47 68.60 1.88 45.94 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 24 N -0.50 -15.83 11.58 -302.29 -3.50 -19.33 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.44 5.98 -2.39 -0.01 1.42 16 27 H 0.10 1.23 8.13 -2.38 -0.02 1.21 16 28 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 29 H 0.21 1.15 8.06 -2.91 -0.02 1.13 16 30 H 0.36 7.91 8.97 -89.69 -0.80 7.11 16 31 H 0.36 6.59 9.06 -89.69 -0.81 5.77 16 32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.04 1.90 6.81 -2.39 -0.02 1.88 16 35 H 0.02 0.87 7.57 -2.38 -0.02 0.85 16 36 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -72.16 323.57 0.13 -72.03 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -0.54 Total: 13.40 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 4.52 Total: -23.45 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -5.26 Total: -112.91 kcal Atomic # 8 Polarization: 2.20 SS G_CDS: 0.84 Total: 3.04 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.94 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.32 Total: 1.96 kcal Total: -72.16 0.13 -72.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823225192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.497 kcal (2) G-P(sol) polarization free energy of solvation -72.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds