Wall clock time and date at job start Tue Mar 31 2020 06:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37819 * 122.63633 * 2 1 4 4 C 1.33723 * 115.06627 * 179.76322 * 3 2 1 5 5 S 1.75862 * 109.75063 * 0.47811 * 4 3 2 6 6 C 1.34864 * 122.63565 * 180.29111 * 2 1 3 7 7 C 1.47724 * 125.27323 * 0.02562 * 6 2 1 8 8 N 1.31042 * 126.45010 * 0.02562 * 7 6 2 9 9 O 1.21287 * 110.04471 * 179.97438 * 8 7 6 10 10 C 1.33686 * 110.08027 * 0.02562 * 9 8 7 11 11 C 1.50702 * 126.40297 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.47093 * 194.97737 * 11 10 9 13 13 N 1.46897 * 109.47123 * 314.97737 * 11 10 9 14 14 C 1.53004 * 109.47106 * 74.97568 * 11 10 9 15 15 C 1.53005 * 109.47040 * 175.00013 * 14 11 10 16 16 C 1.50700 * 109.46800 * 180.02562 * 15 14 11 17 17 H 1.07997 * 120.00161 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99676 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99962 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99822 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46853 * 60.00529 * 20 18 16 22 22 H 1.48497 * 109.46889 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47210 * 300.00473 * 20 18 16 24 24 N 1.30930 * 107.19548 * 359.76414 * 10 9 8 25 25 H 1.09002 * 109.47152 * 269.70873 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.70973 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.70954 * 1 2 3 28 28 H 1.07998 * 122.46613 * 359.97438 * 3 2 1 29 29 H 1.08008 * 125.12535 * 180.21471 * 4 3 2 30 30 H 1.00901 * 111.00373 * 296.04635 * 13 11 10 31 31 H 1.00907 * 111.00037 * 60.00017 * 13 11 10 32 32 H 1.08995 * 109.46816 * 295.00241 * 14 11 10 33 33 H 1.09000 * 109.47039 * 55.00357 * 14 11 10 34 34 H 1.08998 * 109.46981 * 300.00345 * 15 14 11 35 35 H 1.09000 * 109.46924 * 60.00273 * 15 14 11 36 36 H 0.97003 * 119.99927 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2503 1.1606 0.0000 4 6 3.5759 0.9844 0.0050 5 16 3.9470 -0.7346 -0.0037 6 6 2.2343 -1.1357 -0.0058 7 6 1.6788 -2.5045 -0.0133 8 7 0.4093 -2.8294 -0.0159 9 8 0.2891 -4.0363 -0.0228 10 6 1.4931 -4.6174 -0.0246 11 6 1.7712 -6.0986 -0.0320 12 1 2.8137 -6.2738 0.2337 13 7 0.8986 -6.7655 0.9435 14 6 1.4992 -6.6617 -1.4284 15 6 1.8995 -8.1378 -1.4699 16 6 1.6321 -8.6922 -2.8455 17 1 1.2177 -8.0556 -3.6131 18 6 1.9166 -10.0123 -3.1240 19 7 2.4208 -10.7876 -2.1890 20 14 1.5845 -10.6997 -4.8288 21 1 2.3773 -9.9428 -5.8308 22 1 1.9732 -12.1323 -4.8692 23 1 0.1386 -10.5705 -5.1416 24 7 2.3854 -3.6593 -0.0235 25 1 -0.3633 -0.0052 1.0277 26 1 -0.3633 -0.8874 -0.5183 27 1 -0.3633 0.8926 -0.5093 28 1 1.7956 2.1402 -0.0004 29 1 4.3083 1.7783 0.0091 30 1 1.1037 -6.4575 1.8822 31 1 -0.0740 -6.6179 0.7189 32 1 0.4380 -6.5664 -1.6581 33 1 2.0814 -6.1065 -2.1638 34 1 2.9608 -8.2330 -1.2401 35 1 1.3173 -8.6930 -0.7345 36 1 2.6206 -11.7165 -2.3848 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823225194.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:12 Heat of formation + Delta-G solvation = 68.056211 kcal Electronic energy + Delta-G solvation = -20176.566605 eV Core-core repulsion = 16982.429737 eV Total energy + Delta-G solvation = -3194.136867 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.68409 -39.52495 -38.17202 -36.85445 -35.12466 -33.41319 -32.07076 -31.45121 -29.30951 -28.21632 -25.80196 -25.31238 -24.00817 -23.15742 -21.84502 -19.64446 -19.22618 -19.06487 -18.41379 -17.82063 -17.26363 -16.75523 -16.42680 -16.02346 -15.52979 -15.17705 -14.85682 -14.30020 -14.14876 -14.08559 -13.82329 -13.49122 -13.42087 -13.23009 -12.86521 -12.78173 -12.76755 -12.49758 -12.47702 -12.20816 -11.78255 -11.76572 -11.64596 -11.30965 -11.03465 -10.48319 -10.04474 -9.66419 -9.45030 -8.12767 -6.22480 -0.65906 0.08132 0.36711 0.91765 1.10369 1.43462 1.45591 1.53216 1.59366 1.74831 2.30308 2.46117 2.90228 3.20696 3.49554 3.71004 3.90019 3.97552 4.18750 4.27194 4.29734 4.43728 4.58160 4.65386 4.70626 4.80175 4.92143 4.94536 5.02258 5.21423 5.31678 5.42005 5.58540 5.83547 5.97181 5.99467 6.31025 6.45455 6.92287 6.95364 7.45347 8.98281 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026016 B = 0.003003 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.987017 B = 9322.355135 C = 9563.008930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.051 4.051 3 C -0.145 4.145 4 C -0.179 4.179 5 S 0.155 5.845 6 C -0.185 4.185 7 C 0.234 3.766 8 N -0.381 5.381 9 O 0.074 5.926 10 C 0.174 3.826 11 C 0.201 3.799 12 H 0.124 0.876 13 N -0.816 5.816 14 C -0.089 4.089 15 C 0.040 3.960 16 C -0.546 4.546 17 H 0.055 0.945 18 C 0.004 3.996 19 N -0.928 5.928 20 Si 0.957 3.043 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.268 1.268 24 N -0.498 5.498 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.180 0.820 29 H 0.209 0.791 30 H 0.357 0.643 31 H 0.357 0.643 32 H 0.063 0.937 33 H 0.053 0.947 34 H -0.008 1.008 35 H 0.019 0.981 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.991 25.320 7.308 26.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.069 4.069 3 C -0.175 4.175 4 C -0.316 4.316 5 S 0.421 5.579 6 C -0.303 4.303 7 C -0.036 4.036 8 N -0.092 5.092 9 O 0.018 5.982 10 C -0.050 4.050 11 C 0.085 3.915 12 H 0.142 0.858 13 N -0.347 5.347 14 C -0.128 4.128 15 C 0.003 3.997 16 C -0.584 4.584 17 H 0.073 0.927 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.782 3.218 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.193 1.193 24 N -0.231 5.231 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.114 0.886 28 H 0.198 0.802 29 H 0.225 0.775 30 H 0.172 0.828 31 H 0.172 0.828 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.010 0.990 35 H 0.038 0.962 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.534 24.309 7.111 25.333 hybrid contribution -1.585 0.729 -0.598 1.844 sum -1.051 25.037 6.513 25.892 Atomic orbital electron populations 1.20749 0.88497 1.03824 1.03210 1.19533 0.98663 0.91010 0.97717 1.20212 0.92788 0.99568 1.04886 1.26467 1.00671 0.98883 1.05618 1.84577 1.01186 1.01155 1.71005 1.21362 0.98955 0.90050 1.19953 1.23138 0.85785 0.93799 1.00843 1.74975 1.18977 0.92614 1.22635 1.85235 1.33477 1.13727 1.65793 1.30931 0.79252 1.01327 0.93490 1.20477 1.00399 0.74562 0.96035 0.85838 1.58775 1.09327 1.61185 1.05446 1.21558 1.01334 0.97996 0.91922 1.18815 0.95139 0.90238 0.95484 1.21688 1.42167 0.95998 0.98530 0.92663 1.25859 0.95063 0.97607 1.00900 1.70084 1.44895 1.06879 1.34948 0.85622 0.78939 0.77202 0.79996 1.19562 1.20895 1.19304 1.72092 1.31784 0.97565 1.21693 0.90242 0.92148 0.88552 0.80238 0.77461 0.82831 0.82794 0.91809 0.92825 0.98991 0.96228 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 9.59 71.24 0.68 -1.27 16 2 C -0.05 -1.09 5.83 -20.74 -0.12 -1.21 16 3 C -0.15 -2.10 9.96 21.14 0.21 -1.89 16 4 C -0.18 -2.42 11.23 66.79 0.75 -1.67 16 5 S 0.15 3.32 23.32 -56.49 -1.32 2.00 16 6 C -0.18 -4.92 6.44 24.00 0.15 -4.76 16 7 C 0.23 7.44 7.91 136.95 1.08 8.52 16 8 N -0.38 -11.93 9.68 -58.79 -0.57 -12.50 16 9 O 0.07 2.28 11.27 74.46 0.84 3.12 16 10 C 0.17 5.45 7.28 88.35 0.64 6.09 16 11 C 0.20 6.41 3.29 44.17 0.15 6.55 16 12 H 0.12 4.02 8.14 -2.39 -0.02 4.00 16 13 N -0.82 -22.87 8.67 -171.80 -1.49 -24.36 16 14 C -0.09 -3.51 4.78 30.60 0.15 -3.37 16 15 C 0.04 2.05 4.86 29.85 0.15 2.20 16 16 C -0.55 -30.71 9.11 25.60 0.23 -30.48 16 17 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 18 C 0.00 0.22 5.46 84.66 0.46 0.68 16 19 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 20 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 N -0.50 -16.67 11.58 -302.27 -3.50 -20.17 16 25 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.43 5.97 -2.39 -0.01 1.42 16 27 H 0.10 1.25 8.13 -2.38 -0.02 1.23 16 28 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.21 1.21 8.06 -2.91 -0.02 1.18 16 30 H 0.36 8.06 9.06 -89.69 -0.81 7.25 16 31 H 0.36 9.12 8.97 -89.69 -0.80 8.32 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 34 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.02 1.04 7.75 -2.39 -0.02 1.03 16 36 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -68.67 327.16 0.32 -68.35 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -0.49 Total: 13.62 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 4.54 Total: -20.60 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -5.27 Total: -112.81 kcal Atomic # 8 Polarization: 2.28 SS G_CDS: 0.84 Total: 3.12 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.32 Total: 2.00 kcal Total: -68.67 0.32 -68.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823225194.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.402 kcal (2) G-P(sol) polarization free energy of solvation -68.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds