Wall clock time and date at job start Tue Mar 31 2020 07:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46865 * 2 1 4 4 C 1.33155 * 119.99827 * 126.75355 * 3 2 1 5 5 C 1.50702 * 119.99902 * 7.38093 * 4 3 2 6 6 C 1.46902 * 120.00005 * 187.38444 * 4 3 2 7 7 O 1.21645 * 120.00198 * 3.51541 * 6 4 3 8 8 N 1.34777 * 119.99650 * 183.52104 * 6 4 3 9 9 C 1.36859 * 120.00293 * 4.17790 * 8 6 4 10 10 H 1.08003 * 120.00410 * 301.61600 * 9 8 6 11 11 C 1.38998 * 119.99956 * 121.61572 * 9 8 6 12 12 N 1.31370 * 120.00333 * 4.36883 * 11 9 8 13 13 Si 1.86796 * 120.00031 * 184.36630 * 11 9 8 14 14 H 1.48500 * 109.47559 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.47288 * 120.00427 * 13 11 9 16 16 H 1.48506 * 109.47194 * 240.00012 * 13 11 9 17 17 C 1.39714 * 119.99635 * 184.18105 * 8 6 4 18 18 C 1.38992 * 120.06548 * 300.64586 * 17 8 6 19 19 C 1.38066 * 119.92970 * 179.76456 * 18 17 8 20 20 C 1.38427 * 120.06464 * 0.49295 * 19 18 17 21 21 Cl 1.73601 * 119.92884 * 179.74145 * 20 19 18 22 22 C 1.38414 * 120.13692 * 359.76175 * 20 19 18 23 23 C 1.38066 * 120.06787 * 0.02562 * 22 20 19 24 24 H 1.08998 * 109.47113 * 299.99732 * 1 2 3 25 25 H 1.08997 * 109.47507 * 59.99861 * 1 2 3 26 26 H 1.09004 * 109.47174 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47507 * 120.00139 * 2 1 3 28 28 H 1.08998 * 109.47113 * 240.00268 * 2 1 3 29 29 H 1.08001 * 120.00317 * 306.75222 * 3 2 1 30 30 H 1.08997 * 109.47009 * 6.11437 * 5 4 3 31 31 H 1.09004 * 109.46684 * 126.10973 * 5 4 3 32 32 H 1.08998 * 109.47206 * 246.10722 * 5 4 3 33 33 H 0.96996 * 120.00557 * 184.99774 * 12 11 9 34 34 H 1.07999 * 120.03246 * 359.97438 * 18 17 8 35 35 H 1.08000 * 119.96468 * 180.22696 * 19 18 17 36 36 H 1.08002 * 119.96867 * 179.97438 * 22 20 19 37 37 H 1.08003 * 120.03293 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9047 1.8186 0.9239 5 6 3.5166 0.8129 1.8649 6 6 3.2708 3.2376 1.0261 7 8 2.7296 4.0584 0.3097 8 7 4.2063 3.6300 1.9134 9 6 4.8762 2.6979 2.6587 10 1 4.3280 2.0237 3.3001 11 6 6.2623 2.6189 2.5902 12 7 6.9357 3.4932 1.8774 13 14 7.1676 1.2697 3.5117 14 1 6.1872 0.4197 4.2339 15 1 7.9287 0.4360 2.5468 16 1 8.1068 1.8804 4.4866 17 6 4.4921 4.9883 2.0724 18 6 4.9407 5.7367 0.9905 19 6 5.2177 7.0800 1.1496 20 6 5.0586 7.6790 2.3874 21 17 5.4143 9.3666 2.5850 22 6 4.6170 6.9350 3.4678 23 6 4.3343 5.5924 3.3140 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.6846 2.1166 -0.7494 30 1 3.2126 -0.1916 1.5709 31 1 4.6030 0.8906 1.8233 32 1 3.1767 1.0126 2.8812 33 1 7.8948 3.3960 1.7703 34 1 5.0694 5.2688 0.0257 35 1 5.5628 7.6629 0.3085 36 1 4.4943 7.4050 4.4324 37 1 3.9901 5.0123 4.1575 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843610276.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:47 Heat of formation + Delta-G solvation = 11.800372 kcal Electronic energy + Delta-G solvation = -21277.619437 eV Core-core repulsion = 18046.706676 eV Total energy + Delta-G solvation = -3230.912761 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.69652 -37.84580 -36.01021 -35.38720 -34.88907 -31.85851 -31.40857 -30.25639 -28.60718 -26.66496 -24.95529 -23.76456 -22.07608 -21.78238 -19.88864 -18.35722 -17.47872 -16.39120 -15.64598 -15.31567 -14.90686 -14.68845 -14.16776 -13.93623 -13.51158 -13.49482 -13.15943 -12.72581 -12.67247 -12.28615 -12.03042 -11.92451 -11.73916 -11.53912 -11.36640 -11.30576 -10.96786 -10.92350 -10.75965 -10.49375 -10.45898 -10.19032 -10.09373 -9.13853 -8.71201 -8.31964 -8.19571 -8.09935 -7.22855 -6.48008 -4.40715 1.91555 2.17797 2.27812 2.75022 3.02365 3.11173 3.13644 3.91078 4.23839 4.47611 4.59065 4.87144 5.27453 5.32169 5.52784 5.58046 5.59501 5.76551 5.82310 5.94307 6.07141 6.17830 6.23102 6.24108 6.33222 6.37587 6.48734 6.57463 6.73195 6.85792 6.89274 7.01201 7.16221 7.29796 7.38069 7.45918 7.48196 8.02113 8.24227 8.85574 9.18275 9.67827 10.50828 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.014433 B = 0.005627 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.480304 B = 4974.886380 C = 6456.412394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.129 4.129 4 C -0.125 4.125 5 C -0.116 4.116 6 C 0.527 3.473 7 O -0.583 6.583 8 N -0.404 5.404 9 C -0.362 4.362 10 H 0.104 0.896 11 C 0.056 3.944 12 N -0.846 5.846 13 Si 0.909 3.091 14 H -0.262 1.262 15 H -0.276 1.276 16 H -0.278 1.278 17 C 0.217 3.783 18 C -0.074 4.074 19 C -0.107 4.107 20 C -0.063 4.063 21 Cl -0.103 7.103 22 C -0.108 4.108 23 C -0.123 4.123 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.116 0.884 30 H 0.042 0.958 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.273 0.727 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.106 -2.214 0.926 4.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.139 4.139 3 C -0.149 4.149 4 C -0.128 4.128 5 C -0.171 4.171 6 C 0.320 3.680 7 O -0.467 6.467 8 N -0.118 5.118 9 C -0.488 4.488 10 H 0.121 0.879 11 C -0.154 4.154 12 N -0.478 5.478 13 Si 0.734 3.266 14 H -0.186 1.186 15 H -0.202 1.202 16 H -0.204 1.204 17 C 0.124 3.876 18 C -0.094 4.094 19 C -0.126 4.126 20 C -0.089 4.089 21 Cl -0.075 7.075 22 C -0.127 4.127 23 C -0.143 4.143 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.060 0.940 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.114 -1.591 0.596 4.451 hybrid contribution 0.936 -0.384 0.448 1.106 sum -3.179 -1.975 1.044 3.885 Atomic orbital electron populations 1.21688 0.95439 1.01035 1.02028 1.20792 0.95685 0.94619 1.02755 1.23241 0.96697 0.96814 0.98126 1.21348 0.98261 0.94165 0.99033 1.21608 1.03798 0.94384 0.97346 1.18763 0.81370 0.88448 0.79427 1.90671 1.57184 1.54683 1.44210 1.40841 1.33786 1.02392 1.34802 1.19833 0.89369 1.13952 1.25669 0.87865 1.25717 0.97355 0.96640 0.95646 1.69847 1.08915 1.32449 1.36597 0.86151 0.79970 0.80876 0.79586 1.18573 1.20169 1.20392 1.17909 0.92259 0.85001 0.92423 1.20883 0.96738 0.92394 0.99408 1.20694 1.01669 0.94886 0.95381 1.20605 1.08558 0.83859 0.95908 1.98291 1.94040 1.17308 1.97821 1.20614 1.01177 0.93708 0.97227 1.20944 1.02236 0.93321 0.97769 0.92653 0.92817 0.92918 0.90251 0.91427 0.86644 0.93965 0.87690 0.91775 0.91637 0.86104 0.86198 0.86128 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.89 37.16 0.37 -1.31 16 2 C -0.10 -1.36 6.06 -27.88 -0.17 -1.53 16 3 C -0.13 -2.25 9.07 -36.08 -0.33 -2.57 16 4 C -0.13 -2.51 5.95 -102.89 -0.61 -3.12 16 5 C -0.12 -2.06 7.71 36.01 0.28 -1.78 16 6 C 0.53 12.61 7.43 -12.75 -0.09 12.51 16 7 O -0.58 -15.13 15.46 5.24 0.08 -15.05 16 8 N -0.40 -9.72 2.52 -60.28 -0.15 -9.87 16 9 C -0.36 -8.38 5.60 -15.03 -0.08 -8.47 16 10 H 0.10 2.24 4.94 -52.48 -0.26 1.98 16 11 C 0.06 1.33 5.20 -17.47 -0.09 1.24 16 12 N -0.85 -21.44 12.27 55.50 0.68 -20.75 16 13 Si 0.91 18.11 28.99 -169.99 -4.93 13.18 16 14 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 15 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 16 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 17 C 0.22 5.14 3.88 -83.71 -0.33 4.81 16 18 C -0.07 -1.72 8.58 -39.37 -0.34 -2.05 16 19 C -0.11 -2.17 9.82 -39.57 -0.39 -2.56 16 20 C -0.06 -1.20 6.32 -39.45 -0.25 -1.45 16 21 Cl -0.10 -1.69 28.95 -51.86 -1.50 -3.19 16 22 C -0.11 -2.07 9.82 -39.58 -0.39 -2.46 16 23 C -0.12 -2.62 9.63 -39.37 -0.38 -3.00 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 1.03 5.31 -51.93 -0.28 0.75 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.12 2.13 7.53 -52.49 -0.40 1.74 16 30 H 0.04 0.63 5.30 -51.93 -0.28 0.35 16 31 H 0.10 2.07 5.09 -51.93 -0.26 1.80 16 32 H 0.06 1.12 6.56 -51.93 -0.34 0.78 16 33 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 34 H 0.12 2.94 7.99 -52.49 -0.42 2.53 16 35 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 37 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 LS Contribution 322.29 15.07 4.86 4.86 Total: -1.00 -26.97 322.29 -8.09 -35.06 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.32 Total: 7.53 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -2.80 Total: -11.75 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.53 Total: -30.63 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.08 Total: -15.05 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -4.93 Total: 13.18 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -1.50 Total: -3.19 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.97 -8.09 -35.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843610276.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.858 kcal (2) G-P(sol) polarization free energy of solvation -26.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds