Wall clock time and date at job start Tue Mar 31 2020 07:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46865 * 2 1 4 4 C 1.33155 * 119.99827 * 126.75355 * 3 2 1 5 5 C 1.50702 * 119.99902 * 7.38093 * 4 3 2 6 6 C 1.46902 * 120.00005 * 187.38444 * 4 3 2 7 7 O 1.21645 * 120.00198 * 3.51541 * 6 4 3 8 8 N 1.34777 * 119.99650 * 183.52104 * 6 4 3 9 9 C 1.36859 * 120.00293 * 4.17790 * 8 6 4 10 10 H 1.08003 * 120.00410 * 301.61600 * 9 8 6 11 11 C 1.38998 * 119.99956 * 121.61572 * 9 8 6 12 12 N 1.31370 * 120.00333 * 4.36883 * 11 9 8 13 13 Si 1.86796 * 120.00031 * 184.36630 * 11 9 8 14 14 H 1.48500 * 109.47559 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.47288 * 120.00427 * 13 11 9 16 16 H 1.48506 * 109.47194 * 240.00012 * 13 11 9 17 17 C 1.39714 * 119.99635 * 184.18105 * 8 6 4 18 18 C 1.38992 * 120.06548 * 300.64586 * 17 8 6 19 19 C 1.38066 * 119.92970 * 179.76456 * 18 17 8 20 20 C 1.38427 * 120.06464 * 0.49295 * 19 18 17 21 21 Cl 1.73601 * 119.92884 * 179.74145 * 20 19 18 22 22 C 1.38414 * 120.13692 * 359.76175 * 20 19 18 23 23 C 1.38066 * 120.06787 * 0.02562 * 22 20 19 24 24 H 1.08998 * 109.47113 * 299.99732 * 1 2 3 25 25 H 1.08997 * 109.47507 * 59.99861 * 1 2 3 26 26 H 1.09004 * 109.47174 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47507 * 120.00139 * 2 1 3 28 28 H 1.08998 * 109.47113 * 240.00268 * 2 1 3 29 29 H 1.08001 * 120.00317 * 306.75222 * 3 2 1 30 30 H 1.08997 * 109.47009 * 6.11437 * 5 4 3 31 31 H 1.09004 * 109.46684 * 126.10973 * 5 4 3 32 32 H 1.08998 * 109.47206 * 246.10722 * 5 4 3 33 33 H 0.96996 * 120.00557 * 184.99774 * 12 11 9 34 34 H 1.07999 * 120.03246 * 359.97438 * 18 17 8 35 35 H 1.08000 * 119.96468 * 180.22696 * 19 18 17 36 36 H 1.08002 * 119.96867 * 179.97438 * 22 20 19 37 37 H 1.08003 * 120.03293 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9047 1.8186 0.9239 5 6 3.5166 0.8129 1.8649 6 6 3.2708 3.2376 1.0261 7 8 2.7296 4.0584 0.3097 8 7 4.2063 3.6300 1.9134 9 6 4.8762 2.6979 2.6587 10 1 4.3280 2.0237 3.3001 11 6 6.2623 2.6189 2.5902 12 7 6.9357 3.4932 1.8774 13 14 7.1676 1.2697 3.5117 14 1 6.1872 0.4197 4.2339 15 1 7.9287 0.4360 2.5468 16 1 8.1068 1.8804 4.4866 17 6 4.4921 4.9883 2.0724 18 6 4.9407 5.7367 0.9905 19 6 5.2177 7.0800 1.1496 20 6 5.0586 7.6790 2.3874 21 17 5.4143 9.3666 2.5850 22 6 4.6170 6.9350 3.4678 23 6 4.3343 5.5924 3.3140 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.6846 2.1166 -0.7494 30 1 3.2126 -0.1916 1.5709 31 1 4.6030 0.8906 1.8233 32 1 3.1767 1.0126 2.8812 33 1 7.8948 3.3960 1.7703 34 1 5.0694 5.2688 0.0257 35 1 5.5628 7.6629 0.3085 36 1 4.4943 7.4050 4.4324 37 1 3.9901 5.0123 4.1575 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843610276.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:47 Heat of formation + Delta-G solvation = -0.514927 kcal Electronic energy + Delta-G solvation = -21278.153468 eV Core-core repulsion = 18046.706676 eV Total energy + Delta-G solvation = -3231.446792 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41882 -39.47615 -37.49277 -36.86392 -36.57246 -33.65388 -32.67567 -31.90174 -30.20488 -28.19140 -26.58364 -25.19322 -23.69468 -23.27610 -21.51881 -20.01821 -19.02980 -18.02974 -17.32033 -17.01372 -16.49038 -16.31028 -15.74089 -15.35017 -15.09161 -14.80099 -14.63994 -14.34498 -14.21053 -13.82682 -13.54810 -13.37707 -13.21262 -12.92269 -12.86592 -12.78692 -12.51337 -12.28153 -12.11578 -11.97376 -11.93905 -11.70033 -11.41661 -10.91748 -10.45746 -9.93621 -9.84762 -9.64659 -8.96759 -8.24462 -6.22201 0.28493 0.51742 0.72156 1.22560 1.45162 1.48754 1.60115 2.25541 2.52607 2.81956 2.89924 3.12113 3.97029 3.99683 4.03915 4.20079 4.38845 4.49635 4.50033 4.53724 4.60976 4.70950 4.85300 5.02732 5.06431 5.09508 5.17393 5.18518 5.23158 5.34723 5.39270 5.44366 5.54923 5.72450 5.77341 5.81413 5.97981 6.25449 6.46952 7.06702 7.40110 7.90345 8.74176 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.014433 B = 0.005627 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.480304 B = 4974.886380 C = 6456.412394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C -0.101 4.101 4 C -0.163 4.163 5 C -0.105 4.105 6 C 0.509 3.491 7 O -0.622 6.622 8 N -0.412 5.412 9 C -0.361 4.361 10 H 0.118 0.882 11 C 0.014 3.986 12 N -0.886 5.886 13 Si 0.971 3.029 14 H -0.239 1.239 15 H -0.279 1.279 16 H -0.287 1.287 17 C 0.186 3.814 18 C -0.097 4.097 19 C -0.107 4.107 20 C -0.063 4.063 21 Cl -0.071 7.071 22 C -0.099 4.099 23 C -0.135 4.135 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.269 0.731 34 H 0.092 0.908 35 H 0.139 0.861 36 H 0.155 0.845 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.696 -3.379 2.171 6.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C -0.121 4.121 4 C -0.166 4.166 5 C -0.160 4.160 6 C 0.303 3.697 7 O -0.509 6.509 8 N -0.126 5.126 9 C -0.487 4.487 10 H 0.135 0.865 11 C -0.192 4.192 12 N -0.520 5.520 13 Si 0.794 3.206 14 H -0.161 1.161 15 H -0.204 1.204 16 H -0.213 1.213 17 C 0.094 3.906 18 C -0.118 4.118 19 C -0.126 4.126 20 C -0.090 4.090 21 Cl -0.042 7.042 22 C -0.118 4.118 23 C -0.155 4.155 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.157 0.843 36 H 0.172 0.828 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.715 -2.763 1.862 5.773 hybrid contribution 1.040 0.106 -0.018 1.045 sum -3.675 -2.657 1.843 4.896 Atomic orbital electron populations 1.21683 0.93814 1.02756 1.01719 1.20897 0.96930 0.91504 1.04192 1.23582 0.94064 0.98839 0.95604 1.21402 1.00809 0.92628 1.01728 1.21438 1.02196 0.95421 0.96952 1.19534 0.81077 0.90104 0.78947 1.90615 1.58549 1.56085 1.45675 1.41082 1.33745 1.02916 1.34862 1.20191 0.89541 1.13743 1.25200 0.86478 1.26500 0.98000 0.98422 0.96246 1.70004 1.08791 1.34389 1.38769 0.85198 0.78796 0.78461 0.78142 1.16134 1.20417 1.21300 1.18256 0.93432 0.85368 0.93522 1.20770 0.98813 0.93830 0.98346 1.20882 1.00960 0.93973 0.96815 1.20698 1.07400 0.85571 0.95323 1.98301 1.93749 1.14448 1.97686 1.20960 0.99374 0.92820 0.98621 1.21125 1.02743 0.94543 0.97095 0.93423 0.92794 0.90174 0.89144 0.89389 0.88371 0.90534 0.89826 0.91701 0.92119 0.88984 0.84296 0.82767 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.89 71.98 0.71 -2.19 16 2 C -0.10 -2.36 6.06 29.85 0.18 -2.18 16 3 C -0.10 -3.46 9.07 24.54 0.22 -3.24 16 4 C -0.16 -6.58 5.95 -18.74 -0.11 -6.70 16 5 C -0.10 -3.59 7.71 71.24 0.55 -3.05 16 6 C 0.51 25.43 7.43 86.51 0.64 26.07 16 7 O -0.62 -34.16 15.46 -4.17 -0.06 -34.23 16 8 N -0.41 -20.61 2.52 -462.88 -1.17 -21.78 16 9 C -0.36 -16.95 5.60 84.09 0.47 -16.48 16 10 H 0.12 5.05 4.94 -2.91 -0.01 5.03 16 11 C 0.01 0.66 5.20 84.94 0.44 1.10 16 12 N -0.89 -46.42 12.27 21.67 0.27 -46.16 16 13 Si 0.97 36.98 28.99 68.60 1.99 38.97 16 14 H -0.24 -8.10 7.11 99.48 0.71 -7.40 16 15 H -0.28 -10.62 7.11 99.48 0.71 -9.91 16 16 H -0.29 -11.24 7.11 99.48 0.71 -10.54 16 17 C 0.19 9.19 3.88 38.24 0.15 9.34 16 18 C -0.10 -4.74 8.58 22.41 0.19 -4.55 16 19 C -0.11 -4.41 9.82 22.27 0.22 -4.19 16 20 C -0.06 -2.36 6.32 22.36 0.14 -2.22 16 21 Cl -0.07 -2.16 28.95 -2.72 -0.08 -2.24 16 22 C -0.10 -3.67 9.82 22.27 0.22 -3.45 16 23 C -0.14 -5.82 9.63 22.41 0.22 -5.61 16 24 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.09 2.00 5.31 -2.39 -0.01 1.99 16 28 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.10 3.70 7.53 -2.91 -0.02 3.68 16 30 H 0.08 2.06 5.30 -2.39 -0.01 2.05 16 31 H 0.08 3.24 5.09 -2.38 -0.01 3.22 16 32 H 0.06 2.17 6.56 -2.39 -0.02 2.15 16 33 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 34 H 0.09 4.88 7.99 -2.91 -0.02 4.86 16 35 H 0.14 5.01 8.06 -2.91 -0.02 4.99 16 36 H 0.15 4.61 8.06 -2.91 -0.02 4.59 16 37 H 0.13 5.33 8.06 -2.91 -0.02 5.31 16 Total: -1.00 -61.13 322.29 6.28 -54.85 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 1.09 Total: 27.93 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 4.24 Total: -17.34 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -0.90 Total: -67.93 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.06 Total: -34.23 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 1.99 Total: 38.97 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.08 Total: -2.24 kcal Total: -61.13 6.28 -54.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843610276.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.337 kcal (2) G-P(sol) polarization free energy of solvation -61.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds