Wall clock time and date at job start Tue Mar 31 2020 07:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00266 * 2 1 4 4 C 1.52999 * 109.46996 * 125.00174 * 3 2 1 5 5 C 1.52996 * 109.47308 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47249 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00184 * 354.96280 * 6 5 4 8 8 N 1.34782 * 119.99869 * 174.96933 * 6 5 4 9 9 C 1.37129 * 119.99818 * 3.95209 * 8 6 5 10 10 H 1.08001 * 120.00587 * 306.62481 * 9 8 6 11 11 C 1.38892 * 119.99876 * 126.62813 * 9 8 6 12 12 N 1.31423 * 119.99501 * 3.08736 * 11 9 8 13 13 Si 1.86797 * 120.00227 * 183.08524 * 11 9 8 14 14 H 1.48503 * 109.46889 * 89.99899 * 13 11 9 15 15 H 1.48492 * 109.47276 * 209.99904 * 13 11 9 16 16 H 1.48503 * 109.47154 * 330.00284 * 13 11 9 17 17 C 1.39811 * 119.99920 * 183.95697 * 8 6 5 18 18 C 1.38967 * 120.06149 * 351.99101 * 17 8 6 19 19 C 1.38071 * 119.92841 * 180.25403 * 18 17 8 20 20 C 1.38416 * 120.06799 * 359.46818 * 19 18 17 21 21 Cl 1.73593 * 119.93606 * 180.29783 * 20 19 18 22 22 C 1.38423 * 120.12988 * 0.27927 * 20 19 18 23 23 C 1.38075 * 120.06293 * 359.97438 * 22 20 19 24 24 H 1.08006 * 119.99790 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.01001 * 179.97438 * 1 2 3 26 26 H 1.08005 * 119.99368 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47036 * 4.99936 * 3 2 1 28 28 H 1.09002 * 109.47200 * 244.99838 * 3 2 1 29 29 H 1.09002 * 109.46934 * 59.99816 * 4 3 2 30 30 H 1.09002 * 109.46872 * 299.99865 * 4 3 2 31 31 H 1.09004 * 109.46828 * 59.99699 * 5 4 3 32 32 H 1.08994 * 109.47283 * 300.00073 * 5 4 3 33 33 H 0.97003 * 119.99581 * 185.00527 * 12 11 9 34 34 H 1.07994 * 120.03649 * 0.02562 * 18 17 8 35 35 H 1.07996 * 119.96304 * 179.74961 * 19 18 17 36 36 H 1.07993 * 119.97134 * 179.97438 * 22 20 19 37 37 H 1.07997 * 120.03207 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.8006 2.6576 1.1813 6 6 4.7571 2.6853 2.3455 7 8 4.7561 1.7803 3.1528 8 7 5.6136 3.7160 2.4896 9 6 5.5600 4.7781 1.6239 10 1 5.6070 4.6092 0.5582 11 6 5.4452 6.0713 2.1176 12 7 5.4491 6.2821 3.4148 13 14 5.2854 7.5107 0.9379 14 1 3.8496 7.7586 0.6511 15 1 5.8840 8.7229 1.5521 16 1 5.9955 7.1949 -0.3275 17 6 6.5567 3.7021 3.5216 18 6 6.5068 2.7135 4.4970 19 6 7.4364 2.7055 5.5178 20 6 8.4239 3.6743 5.5642 21 17 9.5956 3.6564 6.8449 22 6 8.4793 4.6571 4.5910 23 6 7.5493 4.6734 3.5706 24 1 -0.5400 0.9354 0.0004 25 1 -0.5402 -0.9352 -0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4025 -0.9314 29 1 3.7399 0.5063 1.0920 30 1 2.4772 1.2355 2.1130 31 1 3.0960 3.4845 1.2706 32 1 4.3584 2.7547 0.2500 33 1 5.2964 7.1750 3.7615 34 1 5.7395 1.9545 4.4586 35 1 7.3957 1.9399 6.2784 36 1 9.2506 5.4120 4.6299 37 1 7.5932 5.4402 2.8114 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843610288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:54 Heat of formation + Delta-G solvation = 3.294278 kcal Electronic energy + Delta-G solvation = -20802.226946 eV Core-core repulsion = 17570.945333 eV Total energy + Delta-G solvation = -3231.281613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.84480 -37.61346 -36.00894 -35.56823 -34.88005 -32.09805 -31.98481 -29.88515 -28.90459 -26.63159 -25.23704 -22.53726 -21.71024 -20.81384 -19.81824 -19.31186 -17.72061 -16.40428 -15.84388 -15.67729 -15.26979 -14.88494 -14.43483 -13.98437 -13.55793 -13.51831 -13.15104 -12.92547 -12.57276 -12.46529 -12.10522 -11.94039 -11.70640 -11.36854 -11.20144 -11.18746 -11.08875 -10.77535 -10.67600 -10.59755 -10.47032 -10.30466 -10.04674 -9.29590 -9.27374 -8.76670 -8.27628 -7.97318 -6.95077 -6.40648 -4.59461 2.16451 2.31673 2.41548 2.96044 2.98750 3.07060 3.09826 3.62784 3.89219 4.39559 4.66277 4.93419 4.99015 5.15654 5.43646 5.45807 5.65897 5.75071 5.80802 5.86392 5.94866 6.03418 6.14732 6.25572 6.45868 6.51125 6.54708 6.62151 6.70821 6.74230 6.83250 6.98095 7.13085 7.18936 7.34382 7.52548 7.59063 7.95593 8.28929 8.75749 9.13395 9.51924 10.40583 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.013318 B = 0.004894 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.857198 B = 5719.980372 C = 7617.267575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.097 4.097 4 C -0.100 4.100 5 C -0.118 4.118 6 C 0.493 3.507 7 O -0.564 6.564 8 N -0.387 5.387 9 C -0.369 4.369 10 H 0.096 0.904 11 C 0.054 3.946 12 N -0.842 5.842 13 Si 0.918 3.082 14 H -0.273 1.273 15 H -0.280 1.280 16 H -0.265 1.265 17 C 0.197 3.803 18 C -0.182 4.182 19 C -0.106 4.106 20 C -0.081 4.081 21 Cl -0.114 7.114 22 C -0.110 4.110 23 C -0.082 4.082 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.276 0.724 34 H 0.180 0.820 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.125 -4.169 -4.195 6.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.162 4.162 3 C -0.134 4.134 4 C -0.138 4.138 5 C -0.157 4.157 6 C 0.286 3.714 7 O -0.448 6.448 8 N -0.094 5.094 9 C -0.496 4.496 10 H 0.113 0.887 11 C -0.156 4.156 12 N -0.474 5.474 13 Si 0.743 3.257 14 H -0.198 1.198 15 H -0.205 1.205 16 H -0.190 1.190 17 C 0.099 3.901 18 C -0.202 4.202 19 C -0.126 4.126 20 C -0.108 4.108 21 Cl -0.086 7.086 22 C -0.130 4.130 23 C -0.103 4.103 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.197 0.803 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.048 -4.417 -3.619 6.066 hybrid contribution 0.044 1.175 -0.238 1.200 sum -2.004 -3.241 -3.857 5.422 Atomic orbital electron populations 1.23800 0.96022 1.01529 1.02934 1.23033 0.95985 0.98821 0.98322 1.20827 0.98363 0.94995 0.99210 1.21308 0.97456 0.97169 0.97839 1.21384 0.98059 0.98718 0.97575 1.20994 0.81123 0.82144 0.87131 1.90194 1.70510 1.39556 1.44548 1.41143 1.25477 1.17551 1.25276 1.19383 1.56354 0.84120 0.89707 0.88669 1.25647 0.94363 0.99443 0.96163 1.69975 1.41877 1.23829 1.11671 0.86054 0.79037 0.80332 0.80238 1.19797 1.20484 1.18972 1.18280 0.88505 0.93644 0.89654 1.22682 1.01824 1.01960 0.93707 1.20756 0.94856 0.97909 0.99081 1.20671 0.95516 1.01387 0.93276 1.98270 1.59586 1.98565 1.52180 1.20605 1.00003 0.97764 0.94598 1.20703 0.92690 0.98234 0.98670 0.88708 0.88904 0.87555 0.91490 0.91006 0.91688 0.91388 0.88888 0.89642 0.91319 0.80349 0.86712 0.86764 0.84906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.15 14.32 29.02 0.42 -1.74 16 2 C -0.14 -1.63 9.52 -36.03 -0.34 -1.97 16 3 C -0.10 -1.18 5.66 -27.88 -0.16 -1.33 16 4 C -0.10 -1.49 4.50 -26.73 -0.12 -1.62 16 5 C -0.12 -2.03 4.52 -27.89 -0.13 -2.16 16 6 C 0.49 10.85 7.57 -10.98 -0.08 10.77 16 7 O -0.56 -13.13 12.39 5.56 0.07 -13.07 16 8 N -0.39 -9.18 2.70 -58.97 -0.16 -9.34 16 9 C -0.37 -8.49 7.52 -14.94 -0.11 -8.60 16 10 H 0.10 2.05 7.43 -52.49 -0.39 1.66 16 11 C 0.05 1.24 4.13 -17.48 -0.07 1.17 16 12 N -0.84 -21.03 10.89 55.49 0.60 -20.42 16 13 Si 0.92 17.83 29.56 -169.99 -5.02 12.81 16 14 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 15 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 16 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 17 C 0.20 4.75 5.70 -83.68 -0.48 4.28 16 18 C -0.18 -4.20 9.04 -39.37 -0.36 -4.56 16 19 C -0.11 -2.22 9.82 -39.58 -0.39 -2.61 16 20 C -0.08 -1.65 6.32 -39.45 -0.25 -1.90 16 21 Cl -0.11 -2.00 28.95 -51.86 -1.50 -3.50 16 22 C -0.11 -2.30 9.82 -39.57 -0.39 -2.69 16 23 C -0.08 -1.88 7.54 -39.38 -0.30 -2.18 16 24 H 0.09 0.95 7.84 -52.48 -0.41 0.54 16 25 H 0.09 0.84 8.06 -52.49 -0.42 0.42 16 26 H 0.11 1.13 8.06 -52.48 -0.42 0.70 16 27 H 0.07 0.79 7.79 -51.93 -0.40 0.39 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.10 8.04 -51.93 -0.42 0.69 16 31 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.09 1.36 7.73 -51.93 -0.40 0.96 16 33 H 0.28 6.60 8.32 -40.82 -0.34 6.26 16 34 H 0.18 4.26 4.56 -56.08 -0.26 4.00 16 35 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.13 3.14 5.91 -52.49 -0.31 2.83 16 LS Contribution 326.07 15.07 4.91 4.91 Total: -1.00 -25.84 326.07 -8.54 -34.38 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -4.69 Total: 9.37 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -2.76 Total: -15.14 kcal Atomic # 7 Polarization: -30.21 SS G_CDS: 0.44 Total: -29.77 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.07 Total: -13.07 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.02 Total: 12.81 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -1.50 Total: -3.50 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -25.84 -8.54 -34.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843610288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.675 kcal (2) G-P(sol) polarization free energy of solvation -25.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds