Wall clock time and date at job start Tue Mar 31 2020 07:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00266 * 2 1 4 4 C 1.52999 * 109.46996 * 125.00174 * 3 2 1 5 5 C 1.52996 * 109.47308 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47249 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00184 * 354.96280 * 6 5 4 8 8 N 1.34782 * 119.99869 * 174.96933 * 6 5 4 9 9 C 1.37129 * 119.99818 * 3.95209 * 8 6 5 10 10 H 1.08001 * 120.00587 * 306.62481 * 9 8 6 11 11 C 1.38892 * 119.99876 * 126.62813 * 9 8 6 12 12 N 1.31423 * 119.99501 * 3.08736 * 11 9 8 13 13 Si 1.86797 * 120.00227 * 183.08524 * 11 9 8 14 14 H 1.48503 * 109.46889 * 89.99899 * 13 11 9 15 15 H 1.48492 * 109.47276 * 209.99904 * 13 11 9 16 16 H 1.48503 * 109.47154 * 330.00284 * 13 11 9 17 17 C 1.39811 * 119.99920 * 183.95697 * 8 6 5 18 18 C 1.38967 * 120.06149 * 351.99101 * 17 8 6 19 19 C 1.38071 * 119.92841 * 180.25403 * 18 17 8 20 20 C 1.38416 * 120.06799 * 359.46818 * 19 18 17 21 21 Cl 1.73593 * 119.93606 * 180.29783 * 20 19 18 22 22 C 1.38423 * 120.12988 * 0.27927 * 20 19 18 23 23 C 1.38075 * 120.06293 * 359.97438 * 22 20 19 24 24 H 1.08006 * 119.99790 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.01001 * 179.97438 * 1 2 3 26 26 H 1.08005 * 119.99368 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47036 * 4.99936 * 3 2 1 28 28 H 1.09002 * 109.47200 * 244.99838 * 3 2 1 29 29 H 1.09002 * 109.46934 * 59.99816 * 4 3 2 30 30 H 1.09002 * 109.46872 * 299.99865 * 4 3 2 31 31 H 1.09004 * 109.46828 * 59.99699 * 5 4 3 32 32 H 1.08994 * 109.47283 * 300.00073 * 5 4 3 33 33 H 0.97003 * 119.99581 * 185.00527 * 12 11 9 34 34 H 1.07994 * 120.03649 * 0.02562 * 18 17 8 35 35 H 1.07996 * 119.96304 * 179.74961 * 19 18 17 36 36 H 1.07993 * 119.97134 * 179.97438 * 22 20 19 37 37 H 1.07997 * 120.03207 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.8006 2.6576 1.1813 6 6 4.7571 2.6853 2.3455 7 8 4.7561 1.7803 3.1528 8 7 5.6136 3.7160 2.4896 9 6 5.5600 4.7781 1.6239 10 1 5.6070 4.6092 0.5582 11 6 5.4452 6.0713 2.1176 12 7 5.4491 6.2821 3.4148 13 14 5.2854 7.5107 0.9379 14 1 3.8496 7.7586 0.6511 15 1 5.8840 8.7229 1.5521 16 1 5.9955 7.1949 -0.3275 17 6 6.5567 3.7021 3.5216 18 6 6.5068 2.7135 4.4970 19 6 7.4364 2.7055 5.5178 20 6 8.4239 3.6743 5.5642 21 17 9.5956 3.6564 6.8449 22 6 8.4793 4.6571 4.5910 23 6 7.5493 4.6734 3.5706 24 1 -0.5400 0.9354 0.0004 25 1 -0.5402 -0.9352 -0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4025 -0.9314 29 1 3.7399 0.5063 1.0920 30 1 2.4772 1.2355 2.1130 31 1 3.0960 3.4845 1.2706 32 1 4.3584 2.7547 0.2500 33 1 5.2964 7.1750 3.7615 34 1 5.7395 1.9545 4.4586 35 1 7.3957 1.9399 6.2784 36 1 9.2506 5.4120 4.6299 37 1 7.5932 5.4402 2.8114 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843610288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:53 Heat of formation + Delta-G solvation = -6.966997 kcal Electronic energy + Delta-G solvation = -20802.671909 eV Core-core repulsion = 17570.945333 eV Total energy + Delta-G solvation = -3231.726575 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.55093 -39.26272 -37.47675 -36.76023 -36.56362 -33.76153 -33.27824 -31.59085 -30.49773 -27.92259 -26.97692 -24.02052 -23.35865 -22.30748 -21.11284 -20.58711 -19.39698 -18.06171 -17.51716 -17.23224 -16.66202 -16.34565 -15.84703 -15.51655 -15.06771 -14.97904 -14.59977 -14.25168 -14.19157 -14.06907 -13.63477 -13.43548 -13.16951 -12.87026 -12.74704 -12.45966 -12.42359 -12.33105 -12.17079 -12.03174 -11.70641 -11.62593 -11.52375 -11.01759 -10.47558 -10.15700 -9.98649 -9.68989 -8.70399 -8.15471 -6.39955 0.46154 0.68601 1.36348 1.45188 1.46866 1.49113 1.59615 1.94993 2.26490 2.79632 2.92382 3.23060 3.95542 3.99536 4.13812 4.18207 4.22555 4.40696 4.51575 4.70006 4.76329 4.78281 4.80091 4.85632 4.99955 5.06404 5.13419 5.29175 5.31742 5.38748 5.44216 5.47039 5.61228 5.77820 5.82066 5.88832 5.96743 6.19734 6.51915 6.99713 7.40049 7.78465 8.65959 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.013318 B = 0.004894 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.857198 B = 5719.980372 C = 7617.267575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C -0.089 4.089 4 C -0.090 4.090 5 C -0.108 4.108 6 C 0.478 3.522 7 O -0.584 6.584 8 N -0.402 5.402 9 C -0.375 4.375 10 H 0.108 0.892 11 C 0.017 3.983 12 N -0.879 5.879 13 Si 0.984 3.016 14 H -0.269 1.269 15 H -0.287 1.287 16 H -0.253 1.253 17 C 0.171 3.829 18 C -0.201 4.201 19 C -0.105 4.105 20 C -0.082 4.082 21 Cl -0.083 7.083 22 C -0.109 4.109 23 C -0.094 4.094 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.273 0.727 34 H 0.169 0.831 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.160 -3.988 -5.040 6.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.180 4.180 3 C -0.126 4.126 4 C -0.128 4.128 5 C -0.148 4.148 6 C 0.272 3.728 7 O -0.470 6.470 8 N -0.110 5.110 9 C -0.502 4.502 10 H 0.126 0.874 11 C -0.189 4.189 12 N -0.512 5.512 13 Si 0.807 3.193 14 H -0.194 1.194 15 H -0.212 1.212 16 H -0.177 1.177 17 C 0.073 3.927 18 C -0.221 4.221 19 C -0.124 4.124 20 C -0.110 4.110 21 Cl -0.055 7.055 22 C -0.128 4.128 23 C -0.115 4.115 24 H 0.117 0.883 25 H 0.126 0.874 26 H 0.129 0.871 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.186 0.814 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.081 -4.252 -4.478 6.517 hybrid contribution 0.114 1.063 0.125 1.076 sum -1.967 -3.190 -4.353 5.744 Atomic orbital electron populations 1.24004 0.95808 1.02511 1.01185 1.23062 0.96443 0.98602 0.99881 1.20748 0.97877 0.95801 0.98198 1.21213 0.97483 0.95607 0.98492 1.21411 0.97237 0.99984 0.96148 1.21846 0.81383 0.81440 0.88132 1.90171 1.71136 1.40100 1.45595 1.41452 1.25900 1.18182 1.25445 1.19750 1.55887 0.84282 0.90247 0.87436 1.26399 0.93641 1.01596 0.97295 1.70112 1.43424 1.24053 1.13566 0.85053 0.78989 0.76756 0.78526 1.19413 1.21242 1.17699 1.18614 0.89273 0.94375 0.90407 1.22681 1.02670 1.02053 0.94724 1.20981 0.94216 0.98430 0.98758 1.20732 0.95805 1.00648 0.93793 1.98277 1.58184 1.98473 1.50544 1.20844 0.99817 0.98221 0.93960 1.20673 0.93436 0.98045 0.99378 0.88278 0.87434 0.87077 0.91050 0.89793 0.92300 0.93154 0.88749 0.88013 0.91681 0.81448 0.84485 0.84640 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.76 14.32 67.78 0.97 -2.79 16 2 C -0.16 -3.44 9.52 25.65 0.24 -3.19 16 3 C -0.09 -2.04 5.66 29.85 0.17 -1.87 16 4 C -0.09 -2.67 4.50 30.59 0.14 -2.53 16 5 C -0.11 -3.72 4.52 29.85 0.14 -3.58 16 6 C 0.48 21.47 7.57 87.66 0.66 22.14 16 7 O -0.58 -28.12 12.39 -3.02 -0.04 -28.16 16 8 N -0.40 -19.44 2.70 -458.88 -1.24 -20.68 16 9 C -0.38 -17.30 7.52 84.02 0.63 -16.67 16 10 H 0.11 4.55 7.43 -2.91 -0.02 4.53 16 11 C 0.02 0.77 4.13 84.91 0.35 1.13 16 12 N -0.88 -44.54 10.89 21.65 0.24 -44.31 16 13 Si 0.98 36.14 29.56 68.60 2.03 38.17 16 14 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 15 H -0.29 -10.78 7.11 99.48 0.71 -10.08 16 16 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 17 C 0.17 8.44 5.70 38.22 0.22 8.66 16 18 C -0.20 -9.50 9.04 22.41 0.20 -9.30 16 19 C -0.10 -4.32 9.82 22.27 0.22 -4.10 16 20 C -0.08 -3.25 6.32 22.36 0.14 -3.11 16 21 Cl -0.08 -2.73 28.95 -2.72 -0.08 -2.81 16 22 C -0.11 -4.50 9.82 22.27 0.22 -4.28 16 23 C -0.09 -4.39 7.54 22.40 0.17 -4.22 16 24 H 0.10 1.78 7.84 -2.91 -0.02 1.76 16 25 H 0.11 1.70 8.06 -2.91 -0.02 1.68 16 26 H 0.11 2.22 8.06 -2.91 -0.02 2.20 16 27 H 0.07 1.56 7.79 -2.38 -0.02 1.55 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.05 1.65 8.04 -2.39 -0.02 1.64 16 31 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 32 H 0.10 3.13 7.73 -2.39 -0.02 3.11 16 33 H 0.27 13.29 8.32 -92.71 -0.77 12.52 16 34 H 0.17 8.29 4.56 -59.74 -0.27 8.02 16 35 H 0.14 4.91 8.06 -2.91 -0.02 4.89 16 36 H 0.14 4.89 8.06 -2.91 -0.02 4.86 16 37 H 0.12 5.86 5.91 -2.91 -0.02 5.84 16 Total: -1.00 -55.50 326.07 6.18 -49.31 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.81 Total: 32.19 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 4.47 Total: -23.71 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: -1.00 Total: -64.99 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.04 Total: -28.16 kcal Atomic # 14 Polarization: 36.14 SS G_CDS: 2.03 Total: 38.17 kcal Atomic # 17 Polarization: -2.73 SS G_CDS: -0.08 Total: -2.81 kcal Total: -55.50 6.18 -49.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843610288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.344 kcal (2) G-P(sol) polarization free energy of solvation -55.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds