Wall clock time and date at job start Tue Mar 31 2020 07:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33149 * 120.00112 * 2 1 4 4 C 1.50700 * 119.99934 * 179.72453 * 3 2 1 5 5 C 1.52998 * 109.46776 * 95.74740 * 4 3 2 6 6 C 1.46901 * 120.00170 * 359.73008 * 3 2 1 7 7 O 1.21653 * 119.99992 * 1.60890 * 6 3 2 8 8 N 1.34771 * 120.00093 * 181.60540 * 6 3 2 9 9 C 1.36861 * 120.00189 * 354.31784 * 8 6 3 10 10 H 1.07998 * 120.00024 * 57.86931 * 9 8 6 11 11 C 1.38993 * 120.00656 * 237.87012 * 9 8 6 12 12 N 1.31376 * 119.99712 * 5.97775 * 11 9 8 13 13 Si 1.86800 * 120.00591 * 185.98127 * 11 9 8 14 14 H 1.48496 * 109.47450 * 89.99699 * 13 11 9 15 15 H 1.48500 * 109.47337 * 210.00033 * 13 11 9 16 16 H 1.48498 * 109.46945 * 329.99667 * 13 11 9 17 17 C 1.39715 * 120.00346 * 174.32132 * 8 6 3 18 18 C 1.38980 * 120.06662 * 246.40603 * 17 8 6 19 19 C 1.38073 * 119.93227 * 179.73900 * 18 17 8 20 20 C 1.38421 * 120.06487 * 0.50954 * 19 18 17 21 21 Cl 1.73599 * 119.93205 * 179.74399 * 20 19 18 22 22 C 1.38429 * 120.13541 * 359.76345 * 20 19 18 23 23 C 1.38065 * 120.06465 * 359.97438 * 22 20 19 24 24 H 1.09007 * 109.46727 * 300.27354 * 1 2 3 25 25 H 1.09001 * 109.46937 * 60.26594 * 1 2 3 26 26 H 1.08991 * 109.47217 * 180.27324 * 1 2 3 27 27 H 1.07999 * 119.99467 * 179.73313 * 2 1 3 28 28 H 1.09000 * 109.47210 * 215.74564 * 4 3 2 29 29 H 1.09003 * 109.47007 * 335.74709 * 4 3 2 30 30 H 1.08994 * 109.47414 * 48.43862 * 5 4 3 31 31 H 1.09007 * 109.46862 * 168.43809 * 5 4 3 32 32 H 1.09002 * 109.47622 * 288.43365 * 5 4 3 33 33 H 0.97004 * 120.00024 * 185.00509 * 12 11 9 34 34 H 1.07998 * 120.03874 * 359.97438 * 18 17 8 35 35 H 1.08002 * 119.96271 * 180.25440 * 19 18 17 36 36 H 1.07999 * 119.96610 * 179.97438 * 22 20 19 37 37 H 1.08003 * 120.02900 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1728 1.1531 0.0000 4 6 3.6798 1.1531 0.0063 5 6 4.1957 1.2940 -1.4272 6 6 1.4384 2.4253 -0.0060 7 8 0.2221 2.4257 0.0186 8 7 2.1120 3.5921 -0.0387 9 6 3.4777 3.5967 0.0510 10 1 4.0680 3.0500 -0.6694 11 6 4.1050 4.3048 1.0693 12 7 3.3883 4.8721 2.0130 13 14 5.9672 4.4501 1.0962 14 1 6.3804 5.6587 0.3389 15 1 6.4348 4.5623 2.5012 16 1 6.5668 3.2445 0.4699 17 6 1.4163 4.7972 -0.1641 18 6 1.5582 5.5669 -1.3127 19 6 0.8651 6.7547 -1.4360 20 6 0.0379 7.1844 -0.4127 21 17 -0.8267 8.6816 -0.5686 22 6 -0.1011 6.4228 0.7349 23 6 0.5852 5.2315 0.8617 24 1 -0.3633 0.5181 0.8876 25 1 -0.3633 0.5097 -0.8924 26 1 -0.3633 -1.0276 0.0049 27 1 2.0470 -0.9353 0.0044 28 1 4.0407 1.9885 0.6061 29 1 4.0414 0.2171 0.4322 30 1 3.6761 2.1150 -1.9213 31 1 5.2661 1.4997 -1.4095 32 1 4.0127 0.3679 -1.9721 33 1 3.8192 5.4264 2.6823 34 1 2.2069 5.2344 -2.1095 35 1 0.9718 7.3511 -2.3300 36 1 -0.7469 6.7608 1.5317 37 1 0.4766 4.6379 1.7575 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843610313.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:57 Heat of formation + Delta-G solvation = 23.994178 kcal Electronic energy + Delta-G solvation = -21830.697937 eV Core-core repulsion = 18600.313939 eV Total energy + Delta-G solvation = -3230.383998 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.80304 -37.96409 -36.01847 -35.26538 -34.60304 -31.86554 -31.22340 -30.30203 -28.71121 -26.75390 -24.88942 -22.77703 -22.04040 -21.71338 -20.42767 -18.78904 -17.38692 -16.31053 -15.53469 -15.43378 -14.78657 -14.34170 -13.85229 -13.73204 -13.58784 -13.34021 -12.77957 -12.71886 -12.60507 -12.25946 -12.20832 -11.79245 -11.50451 -11.41933 -11.38982 -11.23348 -11.02749 -10.81870 -10.58451 -10.40556 -10.30975 -10.19941 -10.07514 -8.99572 -8.50011 -8.28028 -8.23366 -8.00464 -7.30882 -6.43562 -4.35590 1.91575 2.12667 2.29529 2.69615 3.05069 3.11912 3.13925 3.93300 4.27621 4.49436 4.58665 4.88061 5.51672 5.54891 5.55447 5.66591 5.84927 6.03896 6.10635 6.12316 6.15403 6.20938 6.29545 6.36475 6.43711 6.61849 6.69813 6.76734 6.80124 6.85217 6.97281 7.09926 7.23482 7.32489 7.41784 7.46630 7.56819 8.05275 8.27649 8.87707 9.23686 9.72585 10.52617 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.006694 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.530610 B = 4181.996027 C = 5525.065312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.127 4.127 3 C -0.128 4.128 4 C -0.117 4.117 5 C -0.139 4.139 6 C 0.528 3.472 7 O -0.577 6.577 8 N -0.409 5.409 9 C -0.365 4.365 10 H 0.119 0.881 11 C 0.052 3.948 12 N -0.847 5.847 13 Si 0.906 3.094 14 H -0.274 1.274 15 H -0.281 1.281 16 H -0.262 1.262 17 C 0.209 3.791 18 C -0.121 4.121 19 C -0.112 4.112 20 C -0.058 4.058 21 Cl -0.101 7.101 22 C -0.111 4.111 23 C -0.065 4.065 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.110 0.890 28 H 0.141 0.859 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.038 0.962 33 H 0.272 0.728 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.314 -1.238 -3.680 3.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.148 4.148 3 C -0.130 4.130 4 C -0.153 4.153 5 C -0.195 4.195 6 C 0.321 3.679 7 O -0.462 6.462 8 N -0.125 5.125 9 C -0.491 4.491 10 H 0.136 0.864 11 C -0.158 4.158 12 N -0.479 5.479 13 Si 0.731 3.269 14 H -0.199 1.199 15 H -0.206 1.206 16 H -0.186 1.186 17 C 0.117 3.883 18 C -0.141 4.141 19 C -0.132 4.132 20 C -0.085 4.085 21 Cl -0.073 7.073 22 C -0.131 4.131 23 C -0.085 4.085 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.055 0.945 27 H 0.128 0.872 28 H 0.158 0.842 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.945 -1.046 -3.447 3.724 hybrid contribution 1.081 0.457 0.236 1.197 sum 0.136 -0.589 -3.211 3.267 Atomic orbital electron populations 1.20828 0.92555 0.99132 1.03705 1.23343 0.96483 0.96350 0.98580 1.21395 0.96501 0.92573 1.02563 1.21576 0.91172 1.03986 0.98549 1.21749 1.00317 1.00549 0.96931 1.18706 0.86464 0.84854 0.77838 1.90669 1.14086 1.87894 1.53512 1.40766 1.06181 1.01165 1.64382 1.20159 0.80123 1.36264 1.12539 0.86416 1.25725 0.99914 0.96216 0.93947 1.69859 1.36796 1.28530 1.12758 0.86253 0.83047 0.79505 0.78053 1.19941 1.20616 1.18578 1.17885 0.90435 0.88568 0.91419 1.21056 1.00459 0.94949 0.97670 1.20636 0.97627 0.96921 0.97999 1.20663 1.00768 0.89206 0.97844 1.98296 1.76644 1.34307 1.98045 1.20758 1.01001 0.94995 0.96330 1.21036 0.95256 0.94343 0.97857 0.90791 0.91079 0.94525 0.87208 0.84199 0.94064 0.91775 0.93068 0.94337 0.91733 0.85768 0.86059 0.86139 0.85687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 8.45 36.01 0.30 -1.54 16 2 C -0.13 -2.25 9.95 -36.08 -0.36 -2.61 16 3 C -0.13 -2.56 5.19 -102.89 -0.53 -3.10 16 4 C -0.12 -2.15 5.25 -27.88 -0.15 -2.29 16 5 C -0.14 -2.28 8.28 37.16 0.31 -1.97 16 6 C 0.53 12.32 7.42 -12.76 -0.09 12.22 16 7 O -0.58 -14.27 12.60 5.23 0.07 -14.20 16 8 N -0.41 -9.59 2.44 -60.73 -0.15 -9.74 16 9 C -0.36 -8.31 5.32 -15.03 -0.08 -8.39 16 10 H 0.12 2.49 3.02 -52.49 -0.16 2.33 16 11 C 0.05 1.21 5.00 -17.47 -0.09 1.12 16 12 N -0.85 -21.21 12.21 55.50 0.68 -20.53 16 13 Si 0.91 18.12 29.36 -169.99 -4.99 13.13 16 14 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 15 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 16 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 17 C 0.21 4.81 3.95 -83.71 -0.33 4.47 16 18 C -0.12 -2.50 9.79 -39.37 -0.39 -2.89 16 19 C -0.11 -2.09 9.82 -39.57 -0.39 -2.47 16 20 C -0.06 -1.09 6.32 -39.44 -0.25 -1.34 16 21 Cl -0.10 -1.62 28.95 -51.86 -1.50 -3.12 16 22 C -0.11 -2.20 9.82 -39.57 -0.39 -2.59 16 23 C -0.06 -1.47 8.55 -39.37 -0.34 -1.80 16 24 H 0.07 1.43 7.18 -51.92 -0.37 1.05 16 25 H 0.07 1.34 7.27 -51.93 -0.38 0.96 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.11 1.63 8.02 -52.49 -0.42 1.21 16 28 H 0.14 2.92 4.13 -52.84 -0.22 2.70 16 29 H 0.04 0.68 8.00 -51.93 -0.42 0.26 16 30 H 0.06 1.14 6.75 -51.93 -0.35 0.79 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.27 6.57 8.32 -40.82 -0.34 6.23 16 34 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 35 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.12 2.12 8.06 -52.49 -0.42 1.69 16 37 H 0.13 3.01 8.06 -52.48 -0.42 2.59 16 LS Contribution 319.32 15.07 4.81 4.81 Total: -1.00 -25.74 319.32 -8.26 -34.00 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -4.41 Total: 8.83 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -2.77 Total: -13.18 kcal Atomic # 7 Polarization: -30.80 SS G_CDS: 0.53 Total: -30.27 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.07 Total: -14.20 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -4.99 Total: 13.13 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -1.50 Total: -3.12 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -25.74 -8.26 -34.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843610313.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.992 kcal (2) G-P(sol) polarization free energy of solvation -25.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds