Wall clock time and date at job start Tue Mar 31 2020 07:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33149 * 120.00112 * 2 1 4 4 C 1.50700 * 119.99934 * 179.72453 * 3 2 1 5 5 C 1.52998 * 109.46776 * 95.74740 * 4 3 2 6 6 C 1.46901 * 120.00170 * 359.73008 * 3 2 1 7 7 O 1.21653 * 119.99992 * 1.60890 * 6 3 2 8 8 N 1.34771 * 120.00093 * 181.60540 * 6 3 2 9 9 C 1.36861 * 120.00189 * 354.31784 * 8 6 3 10 10 H 1.07998 * 120.00024 * 57.86931 * 9 8 6 11 11 C 1.38993 * 120.00656 * 237.87012 * 9 8 6 12 12 N 1.31376 * 119.99712 * 5.97775 * 11 9 8 13 13 Si 1.86800 * 120.00591 * 185.98127 * 11 9 8 14 14 H 1.48496 * 109.47450 * 89.99699 * 13 11 9 15 15 H 1.48500 * 109.47337 * 210.00033 * 13 11 9 16 16 H 1.48498 * 109.46945 * 329.99667 * 13 11 9 17 17 C 1.39715 * 120.00346 * 174.32132 * 8 6 3 18 18 C 1.38980 * 120.06662 * 246.40603 * 17 8 6 19 19 C 1.38073 * 119.93227 * 179.73900 * 18 17 8 20 20 C 1.38421 * 120.06487 * 0.50954 * 19 18 17 21 21 Cl 1.73599 * 119.93205 * 179.74399 * 20 19 18 22 22 C 1.38429 * 120.13541 * 359.76345 * 20 19 18 23 23 C 1.38065 * 120.06465 * 359.97438 * 22 20 19 24 24 H 1.09007 * 109.46727 * 300.27354 * 1 2 3 25 25 H 1.09001 * 109.46937 * 60.26594 * 1 2 3 26 26 H 1.08991 * 109.47217 * 180.27324 * 1 2 3 27 27 H 1.07999 * 119.99467 * 179.73313 * 2 1 3 28 28 H 1.09000 * 109.47210 * 215.74564 * 4 3 2 29 29 H 1.09003 * 109.47007 * 335.74709 * 4 3 2 30 30 H 1.08994 * 109.47414 * 48.43862 * 5 4 3 31 31 H 1.09007 * 109.46862 * 168.43809 * 5 4 3 32 32 H 1.09002 * 109.47622 * 288.43365 * 5 4 3 33 33 H 0.97004 * 120.00024 * 185.00509 * 12 11 9 34 34 H 1.07998 * 120.03874 * 359.97438 * 18 17 8 35 35 H 1.08002 * 119.96271 * 180.25440 * 19 18 17 36 36 H 1.07999 * 119.96610 * 179.97438 * 22 20 19 37 37 H 1.08003 * 120.02900 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1728 1.1531 0.0000 4 6 3.6798 1.1531 0.0063 5 6 4.1957 1.2940 -1.4272 6 6 1.4384 2.4253 -0.0060 7 8 0.2221 2.4257 0.0186 8 7 2.1120 3.5921 -0.0387 9 6 3.4777 3.5967 0.0510 10 1 4.0680 3.0500 -0.6694 11 6 4.1050 4.3048 1.0693 12 7 3.3883 4.8721 2.0130 13 14 5.9672 4.4501 1.0962 14 1 6.3804 5.6587 0.3389 15 1 6.4348 4.5623 2.5012 16 1 6.5668 3.2445 0.4699 17 6 1.4163 4.7972 -0.1641 18 6 1.5582 5.5669 -1.3127 19 6 0.8651 6.7547 -1.4360 20 6 0.0379 7.1844 -0.4127 21 17 -0.8267 8.6816 -0.5686 22 6 -0.1011 6.4228 0.7349 23 6 0.5852 5.2315 0.8617 24 1 -0.3633 0.5181 0.8876 25 1 -0.3633 0.5097 -0.8924 26 1 -0.3633 -1.0276 0.0049 27 1 2.0470 -0.9353 0.0044 28 1 4.0407 1.9885 0.6061 29 1 4.0414 0.2171 0.4322 30 1 3.6761 2.1150 -1.9213 31 1 5.2661 1.4997 -1.4095 32 1 4.0127 0.3679 -1.9721 33 1 3.8192 5.4264 2.6823 34 1 2.2069 5.2344 -2.1095 35 1 0.9718 7.3511 -2.3300 36 1 -0.7469 6.7608 1.5317 37 1 0.4766 4.6379 1.7575 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843610313.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:57 Heat of formation + Delta-G solvation = 13.093141 kcal Electronic energy + Delta-G solvation = -21831.170641 eV Core-core repulsion = 18600.313939 eV Total energy + Delta-G solvation = -3230.856702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47092 -39.55014 -37.49918 -36.91915 -36.11901 -33.61709 -32.66840 -31.89952 -30.31414 -28.26807 -26.56326 -24.38390 -23.63528 -23.11562 -22.04097 -20.48594 -18.99129 -17.90926 -17.18078 -17.08516 -16.41018 -15.91789 -15.44442 -15.23474 -15.19989 -14.86327 -14.35057 -14.24906 -14.19243 -13.76876 -13.61960 -13.39473 -13.01762 -12.94657 -12.87436 -12.72455 -12.55230 -12.30875 -12.09910 -11.95294 -11.75899 -11.66944 -11.56938 -10.68810 -10.20288 -9.84432 -9.81296 -9.60544 -9.01199 -8.17076 -6.12897 0.31983 0.51658 0.76350 1.21537 1.47124 1.48932 1.57938 2.28364 2.60088 2.84314 2.95363 3.15880 3.99090 4.02869 4.11757 4.21749 4.51011 4.52136 4.60282 4.62793 4.74843 4.79147 4.81202 4.96175 4.98219 5.09133 5.20947 5.29367 5.33793 5.34762 5.45539 5.58962 5.68520 5.76157 5.80798 5.83861 6.08243 6.33283 6.54335 7.12495 7.50518 7.99610 8.78483 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.006694 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.530610 B = 4181.996027 C = 5525.065312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.103 4.103 3 C -0.161 4.161 4 C -0.111 4.111 5 C -0.134 4.134 6 C 0.510 3.490 7 O -0.607 6.607 8 N -0.418 5.418 9 C -0.360 4.360 10 H 0.136 0.864 11 C 0.008 3.992 12 N -0.887 5.887 13 Si 0.962 3.038 14 H -0.277 1.277 15 H -0.291 1.291 16 H -0.238 1.238 17 C 0.180 3.820 18 C -0.133 4.133 19 C -0.103 4.103 20 C -0.059 4.059 21 Cl -0.070 7.070 22 C -0.112 4.112 23 C -0.087 4.087 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.150 0.850 28 H 0.113 0.887 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.266 0.734 34 H 0.134 0.866 35 H 0.155 0.845 36 H 0.138 0.862 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.662 -1.906 -5.174 5.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.123 4.123 3 C -0.163 4.163 4 C -0.148 4.148 5 C -0.191 4.191 6 C 0.305 3.695 7 O -0.494 6.494 8 N -0.133 5.133 9 C -0.486 4.486 10 H 0.152 0.848 11 C -0.197 4.197 12 N -0.522 5.522 13 Si 0.786 3.214 14 H -0.203 1.203 15 H -0.217 1.217 16 H -0.161 1.161 17 C 0.088 3.912 18 C -0.153 4.153 19 C -0.122 4.122 20 C -0.086 4.086 21 Cl -0.042 7.042 22 C -0.131 4.131 23 C -0.107 4.107 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.168 0.832 28 H 0.130 0.870 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.152 0.848 35 H 0.173 0.827 36 H 0.156 0.844 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.043 -1.718 -4.961 5.250 hybrid contribution 0.619 0.669 0.678 1.136 sum 0.661 -1.048 -4.284 4.459 Atomic orbital electron populations 1.20777 0.92808 1.00835 1.01602 1.23752 0.96516 0.97061 0.94942 1.21507 0.97564 0.91759 1.05502 1.21429 0.89927 1.04069 0.99365 1.21692 1.00730 1.00931 0.95714 1.19409 0.86580 0.86095 0.77443 1.90631 1.15262 1.88465 1.55048 1.40993 1.06614 1.01502 1.64208 1.20575 0.80114 1.35519 1.12395 0.84778 1.26469 1.03526 0.96123 0.93573 1.70022 1.38205 1.30100 1.13825 0.85381 0.78620 0.80070 0.77374 1.20283 1.21692 1.16067 1.18208 0.91316 0.89121 0.92514 1.21240 1.01169 0.95607 0.97238 1.20980 0.96133 0.96139 0.98902 1.20751 1.00527 0.90106 0.97189 1.98306 1.75864 1.32068 1.97918 1.20921 1.00608 0.94140 0.97461 1.20878 0.97096 0.95559 0.97163 0.93330 0.92864 0.90722 0.83218 0.86963 0.91586 0.93782 0.91676 0.92120 0.92425 0.84824 0.82704 0.84428 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.53 8.45 71.24 0.60 -2.93 16 2 C -0.10 -3.43 9.95 24.54 0.24 -3.18 16 3 C -0.16 -6.37 5.19 -18.74 -0.10 -6.47 16 4 C -0.11 -3.91 5.25 29.85 0.16 -3.76 16 5 C -0.13 -4.08 8.28 71.98 0.60 -3.49 16 6 C 0.51 24.59 7.42 86.51 0.64 25.24 16 7 O -0.61 -31.50 12.60 -4.20 -0.05 -31.55 16 8 N -0.42 -20.26 2.44 -464.28 -1.13 -21.39 16 9 C -0.36 -16.62 5.32 84.09 0.45 -16.17 16 10 H 0.14 5.61 3.02 -2.91 -0.01 5.60 16 11 C 0.01 0.39 5.00 84.94 0.42 0.81 16 12 N -0.89 -46.30 12.21 21.67 0.26 -46.03 16 13 Si 0.96 37.13 29.36 68.60 2.01 39.15 16 14 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 15 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 16 H -0.24 -8.16 7.11 99.48 0.71 -7.45 16 17 C 0.18 8.59 3.95 38.24 0.15 8.74 16 18 C -0.13 -5.51 9.79 22.41 0.22 -5.29 16 19 C -0.10 -3.67 9.82 22.27 0.22 -3.45 16 20 C -0.06 -2.14 6.32 22.36 0.14 -2.00 16 21 Cl -0.07 -2.10 28.95 -2.72 -0.08 -2.18 16 22 C -0.11 -4.51 9.82 22.27 0.22 -4.29 16 23 C -0.09 -4.13 8.55 22.41 0.19 -3.93 16 24 H 0.05 1.91 7.18 -2.38 -0.02 1.89 16 25 H 0.05 2.01 7.27 -2.39 -0.02 1.99 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.15 3.78 8.02 -2.91 -0.02 3.76 16 28 H 0.11 4.62 4.13 -3.25 -0.01 4.60 16 29 H 0.07 1.96 8.00 -2.39 -0.02 1.94 16 30 H 0.04 1.51 6.75 -2.39 -0.02 1.50 16 31 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.27 13.46 8.32 -92.71 -0.77 12.69 16 34 H 0.13 5.14 8.06 -2.91 -0.02 5.12 16 35 H 0.16 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.14 4.88 8.06 -2.91 -0.02 4.86 16 37 H 0.09 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -58.31 319.32 6.25 -52.06 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 1.08 Total: 30.12 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 4.16 Total: -20.17 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: -0.87 Total: -67.43 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.05 Total: -31.55 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.01 Total: 39.15 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.08 Total: -2.18 kcal Total: -58.31 6.25 -52.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843610313.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.151 kcal (2) G-P(sol) polarization free energy of solvation -58.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds