Wall clock time and date at job start Tue Mar 31 2020 07:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33159 * 120.00397 * 2 1 4 4 C 1.50698 * 119.99504 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47069 * 95.82188 * 4 3 2 6 6 C 1.46902 * 120.00224 * 179.97438 * 3 2 1 7 7 O 1.21660 * 119.99934 * 355.92497 * 6 3 2 8 8 N 1.34776 * 120.00037 * 175.92612 * 6 3 2 9 9 C 1.36865 * 119.99842 * 5.78272 * 8 6 3 10 10 H 1.07991 * 120.00009 * 57.45695 * 9 8 6 11 11 C 1.38993 * 119.99689 * 237.45401 * 9 8 6 12 12 N 1.31367 * 119.99656 * 196.06246 * 11 9 8 13 13 Si 1.86800 * 120.00274 * 16.06891 * 11 9 8 14 14 H 1.48494 * 109.47252 * 94.62220 * 13 11 9 15 15 H 1.48500 * 109.47183 * 214.61997 * 13 11 9 16 16 H 1.48501 * 109.46764 * 334.62132 * 13 11 9 17 17 C 1.39707 * 119.99689 * 185.78665 * 8 6 3 18 18 C 1.38983 * 120.07011 * 353.45074 * 17 8 6 19 19 C 1.38067 * 119.93131 * 179.76459 * 18 17 8 20 20 C 1.38418 * 120.06780 * 0.49699 * 19 18 17 21 21 Cl 1.73605 * 119.93477 * 179.74335 * 20 19 18 22 22 C 1.38425 * 120.13513 * 359.75671 * 20 19 18 23 23 C 1.38068 * 120.06758 * 0.02562 * 22 20 19 24 24 H 1.08999 * 109.47062 * 300.00444 * 1 2 3 25 25 H 1.08996 * 109.47172 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46683 * 59.99799 * 1 2 3 27 27 H 1.07999 * 120.00042 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.46754 * 215.81807 * 4 3 2 29 29 H 1.08995 * 109.47434 * 335.81998 * 4 3 2 30 30 H 1.08997 * 109.47037 * 288.37988 * 5 4 3 31 31 H 1.09001 * 109.47150 * 48.37494 * 5 4 3 32 32 H 1.08998 * 109.47173 * 168.37438 * 5 4 3 33 33 H 0.97001 * 120.00049 * 180.02562 * 12 11 9 34 34 H 1.07995 * 120.03382 * 0.02562 * 18 17 8 35 35 H 1.08008 * 119.96343 * 180.23322 * 19 18 17 36 36 H 1.08000 * 119.97046 * 179.97438 * 22 20 19 37 37 H 1.07996 * 120.03429 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1729 1.1531 0.0000 4 6 1.4193 2.4582 -0.0006 5 6 1.2905 2.9734 1.4343 6 6 3.6419 1.1531 0.0006 7 8 4.2501 0.1021 0.0759 8 7 4.3158 2.3173 -0.0824 9 6 3.6367 3.5051 -0.0477 10 1 3.0027 3.7402 0.7942 11 6 3.7632 4.4087 -1.0963 12 7 3.3831 5.6561 -0.9378 13 14 4.4735 3.8492 -2.7309 14 1 3.3681 3.4713 -3.6476 15 1 5.2598 4.9554 -3.3335 16 1 5.3572 2.6762 -2.5110 17 6 5.7076 2.3116 -0.2037 18 6 6.4105 1.1168 -0.1026 19 6 7.7855 1.1138 -0.2278 20 6 8.4648 2.3004 -0.4436 21 17 10.1944 2.2934 -0.5939 22 6 7.7680 3.4926 -0.5395 23 6 6.3926 3.5015 -0.4196 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 2.0470 -0.9353 0.0004 28 1 1.9596 3.1894 -0.6020 29 1 0.4260 2.3041 -0.4218 30 1 0.5819 2.3515 1.9813 31 1 2.2635 2.9320 1.9239 32 1 0.9345 4.0034 1.4199 33 1 3.4710 6.2867 -1.6696 34 1 5.8814 0.1913 0.0695 35 1 8.3319 0.1852 -0.1531 36 1 8.3008 4.4169 -0.7075 37 1 5.8495 4.4320 -0.4941 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843610314.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:01 Heat of formation + Delta-G solvation = 38.764779 kcal Electronic energy + Delta-G solvation = -21887.556496 eV Core-core repulsion = 18657.812999 eV Total energy + Delta-G solvation = -3229.743497 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.42254 -38.04312 -36.11702 -35.85349 -34.96794 -32.42610 -30.93447 -30.34255 -29.03526 -27.15309 -25.35294 -22.81582 -22.35984 -21.85690 -20.25351 -18.73009 -17.47543 -16.38942 -16.22083 -15.79283 -14.85105 -14.58784 -14.31129 -13.97986 -13.57324 -13.45410 -13.03950 -12.98567 -12.72535 -12.55132 -12.31587 -11.92202 -11.84310 -11.78992 -11.62511 -11.31997 -11.24421 -10.84362 -10.49122 -10.42922 -10.21209 -10.18031 -10.03663 -9.20710 -8.87449 -8.51617 -8.40879 -8.33354 -7.07352 -6.70235 -4.50896 1.57970 1.97103 2.21836 2.66158 3.02220 3.11099 3.22996 3.87405 3.91679 4.07578 4.41828 4.66434 5.33872 5.46110 5.47247 5.50687 5.66208 5.79322 5.85242 6.05126 6.05432 6.07497 6.14058 6.24592 6.34430 6.40368 6.59211 6.70340 6.73677 6.83975 6.93572 6.97829 7.09452 7.13124 7.13707 7.52660 7.54164 7.85930 8.11765 8.63466 8.92919 9.23844 10.27587 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018435 B = 0.006198 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.509057 B = 4516.263669 C = 5435.775337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.123 4.123 3 C -0.131 4.131 4 C -0.119 4.119 5 C -0.130 4.130 6 C 0.529 3.471 7 O -0.561 6.561 8 N -0.399 5.399 9 C -0.377 4.377 10 H 0.139 0.861 11 C 0.080 3.920 12 N -0.841 5.841 13 Si 0.850 3.150 14 H -0.273 1.273 15 H -0.273 1.273 16 H -0.245 1.245 17 C 0.177 3.823 18 C -0.180 4.180 19 C -0.094 4.094 20 C -0.081 4.081 21 Cl -0.102 7.102 22 C -0.096 4.096 23 C -0.145 4.145 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.143 0.857 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.282 0.718 34 H 0.189 0.811 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.191 -4.252 0.460 4.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.143 4.143 3 C -0.134 4.134 4 C -0.154 4.154 5 C -0.187 4.187 6 C 0.325 3.675 7 O -0.446 6.446 8 N -0.107 5.107 9 C -0.503 4.503 10 H 0.155 0.845 11 C -0.131 4.131 12 N -0.473 5.473 13 Si 0.673 3.327 14 H -0.199 1.199 15 H -0.198 1.198 16 H -0.169 1.169 17 C 0.079 3.921 18 C -0.200 4.200 19 C -0.114 4.114 20 C -0.108 4.108 21 Cl -0.074 7.074 22 C -0.116 4.116 23 C -0.166 4.166 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.135 0.865 28 H 0.161 0.839 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.205 0.795 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.119 -4.509 0.424 4.531 hybrid contribution 0.615 0.108 -0.987 1.168 sum 0.734 -4.402 -0.562 4.498 Atomic orbital electron populations 1.20834 0.92846 1.01601 1.02213 1.23337 0.95695 0.97545 0.97697 1.21367 0.92246 0.96726 1.03029 1.21546 0.98378 0.96158 0.99363 1.21643 1.00779 1.00025 0.96293 1.18946 0.88482 0.82669 0.77424 1.90257 1.68510 1.32671 1.53159 1.41256 1.02134 1.06915 1.60377 1.19749 1.29522 0.92300 1.08707 0.84457 1.25546 0.94643 0.94715 0.98177 1.69690 1.42390 1.02060 1.33163 0.87214 0.80567 0.81028 0.83849 1.19883 1.19815 1.16874 1.18621 0.84912 0.93710 0.94851 1.22900 0.93160 1.01066 1.02824 1.20937 0.94323 0.96040 1.00070 1.20788 0.82775 0.95799 1.11438 1.98295 1.13169 1.99000 1.96905 1.20722 0.93622 0.96343 1.00894 1.21180 0.93111 0.99011 1.03251 0.91379 0.92466 0.91355 0.86542 0.83936 0.93525 0.94778 0.92133 0.92517 0.90767 0.79491 0.85910 0.85758 0.83262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 8.83 36.00 0.32 -1.19 16 2 C -0.12 -2.02 9.84 -36.08 -0.36 -2.38 16 3 C -0.13 -2.52 5.19 -102.89 -0.53 -3.05 16 4 C -0.12 -2.18 4.89 -27.88 -0.14 -2.32 16 5 C -0.13 -2.25 8.38 37.16 0.31 -1.94 16 6 C 0.53 11.72 7.52 -12.75 -0.10 11.62 16 7 O -0.56 -12.83 12.62 5.22 0.07 -12.76 16 8 N -0.40 -9.12 2.03 -60.64 -0.12 -9.24 16 9 C -0.38 -8.69 5.38 -15.02 -0.08 -8.77 16 10 H 0.14 3.20 3.70 -52.49 -0.19 3.00 16 11 C 0.08 1.88 3.06 -17.47 -0.05 1.83 16 12 N -0.84 -20.38 13.95 55.50 0.77 -19.61 16 13 Si 0.85 19.15 25.45 -169.99 -4.33 14.83 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.25 -5.80 5.44 56.52 0.31 -5.49 16 17 C 0.18 3.98 4.61 -83.71 -0.39 3.59 16 18 C -0.18 -3.81 9.05 -39.37 -0.36 -4.17 16 19 C -0.09 -1.77 9.82 -39.58 -0.39 -2.16 16 20 C -0.08 -1.49 6.32 -39.45 -0.25 -1.73 16 21 Cl -0.10 -1.62 28.95 -51.86 -1.50 -3.12 16 22 C -0.10 -1.85 9.82 -39.58 -0.39 -2.24 16 23 C -0.15 -3.12 6.64 -39.37 -0.26 -3.38 16 24 H 0.07 0.83 7.86 -51.93 -0.41 0.43 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.85 7.42 -51.93 -0.39 0.46 16 27 H 0.12 1.94 7.50 -52.49 -0.39 1.55 16 28 H 0.14 3.06 4.05 -52.66 -0.21 2.85 16 29 H 0.05 0.76 6.30 -51.93 -0.33 0.44 16 30 H 0.03 0.51 7.90 -51.93 -0.41 0.10 16 31 H 0.06 1.15 6.52 -51.93 -0.34 0.81 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.28 6.46 8.31 -40.82 -0.34 6.12 16 34 H 0.19 4.10 4.51 -56.33 -0.25 3.85 16 35 H 0.12 1.99 8.06 -52.48 -0.42 1.57 16 36 H 0.12 2.10 8.06 -52.49 -0.42 1.67 16 37 H 0.15 3.37 4.94 -52.49 -0.26 3.11 16 LS Contribution 303.42 15.07 4.57 4.57 Total: -1.00 -24.60 303.42 -7.30 -31.90 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -4.10 Total: 9.73 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -2.66 Total: -16.30 kcal Atomic # 7 Polarization: -29.50 SS G_CDS: 0.65 Total: -28.85 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.07 Total: -12.76 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.33 Total: 14.83 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -1.50 Total: -3.12 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -24.60 -7.30 -31.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843610314.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.661 kcal (2) G-P(sol) polarization free energy of solvation -24.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds