Wall clock time and date at job start Tue Mar 31 2020 07:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33159 * 120.00397 * 2 1 4 4 C 1.50698 * 119.99504 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47069 * 95.82188 * 4 3 2 6 6 C 1.46902 * 120.00224 * 179.97438 * 3 2 1 7 7 O 1.21660 * 119.99934 * 355.92497 * 6 3 2 8 8 N 1.34776 * 120.00037 * 175.92612 * 6 3 2 9 9 C 1.36865 * 119.99842 * 5.78272 * 8 6 3 10 10 H 1.07991 * 120.00009 * 57.45695 * 9 8 6 11 11 C 1.38993 * 119.99689 * 237.45401 * 9 8 6 12 12 N 1.31367 * 119.99656 * 196.06246 * 11 9 8 13 13 Si 1.86800 * 120.00274 * 16.06891 * 11 9 8 14 14 H 1.48494 * 109.47252 * 94.62220 * 13 11 9 15 15 H 1.48500 * 109.47183 * 214.61997 * 13 11 9 16 16 H 1.48501 * 109.46764 * 334.62132 * 13 11 9 17 17 C 1.39707 * 119.99689 * 185.78665 * 8 6 3 18 18 C 1.38983 * 120.07011 * 353.45074 * 17 8 6 19 19 C 1.38067 * 119.93131 * 179.76459 * 18 17 8 20 20 C 1.38418 * 120.06780 * 0.49699 * 19 18 17 21 21 Cl 1.73605 * 119.93477 * 179.74335 * 20 19 18 22 22 C 1.38425 * 120.13513 * 359.75671 * 20 19 18 23 23 C 1.38068 * 120.06758 * 0.02562 * 22 20 19 24 24 H 1.08999 * 109.47062 * 300.00444 * 1 2 3 25 25 H 1.08996 * 109.47172 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46683 * 59.99799 * 1 2 3 27 27 H 1.07999 * 120.00042 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.46754 * 215.81807 * 4 3 2 29 29 H 1.08995 * 109.47434 * 335.81998 * 4 3 2 30 30 H 1.08997 * 109.47037 * 288.37988 * 5 4 3 31 31 H 1.09001 * 109.47150 * 48.37494 * 5 4 3 32 32 H 1.08998 * 109.47173 * 168.37438 * 5 4 3 33 33 H 0.97001 * 120.00049 * 180.02562 * 12 11 9 34 34 H 1.07995 * 120.03382 * 0.02562 * 18 17 8 35 35 H 1.08008 * 119.96343 * 180.23322 * 19 18 17 36 36 H 1.08000 * 119.97046 * 179.97438 * 22 20 19 37 37 H 1.07996 * 120.03429 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1729 1.1531 0.0000 4 6 1.4193 2.4582 -0.0006 5 6 1.2905 2.9734 1.4343 6 6 3.6419 1.1531 0.0006 7 8 4.2501 0.1021 0.0759 8 7 4.3158 2.3173 -0.0824 9 6 3.6367 3.5051 -0.0477 10 1 3.0027 3.7402 0.7942 11 6 3.7632 4.4087 -1.0963 12 7 3.3831 5.6561 -0.9378 13 14 4.4735 3.8492 -2.7309 14 1 3.3681 3.4713 -3.6476 15 1 5.2598 4.9554 -3.3335 16 1 5.3572 2.6762 -2.5110 17 6 5.7076 2.3116 -0.2037 18 6 6.4105 1.1168 -0.1026 19 6 7.7855 1.1138 -0.2278 20 6 8.4648 2.3004 -0.4436 21 17 10.1944 2.2934 -0.5939 22 6 7.7680 3.4926 -0.5395 23 6 6.3926 3.5015 -0.4196 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 2.0470 -0.9353 0.0004 28 1 1.9596 3.1894 -0.6020 29 1 0.4260 2.3041 -0.4218 30 1 0.5819 2.3515 1.9813 31 1 2.2635 2.9320 1.9239 32 1 0.9345 4.0034 1.4199 33 1 3.4710 6.2867 -1.6696 34 1 5.8814 0.1913 0.0695 35 1 8.3319 0.1852 -0.1531 36 1 8.3008 4.4169 -0.7075 37 1 5.8495 4.4320 -0.4941 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843610314.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:00 Heat of formation + Delta-G solvation = 27.767394 kcal Electronic energy + Delta-G solvation = -21888.033378 eV Core-core repulsion = 18657.812999 eV Total energy + Delta-G solvation = -3230.220379 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.06044 -39.59205 -37.63367 -37.37369 -36.44730 -34.19467 -32.29171 -31.91007 -30.59190 -28.50467 -27.04955 -24.29578 -23.84663 -23.40335 -21.85299 -20.43280 -18.96397 -17.98648 -17.82349 -17.39869 -16.38517 -16.25253 -16.02267 -15.53225 -15.11046 -14.87045 -14.62324 -14.48276 -14.20379 -14.03582 -13.80877 -13.45442 -13.25167 -13.14639 -13.04153 -12.84832 -12.70215 -12.37867 -12.04878 -11.98841 -11.76691 -11.66136 -11.58627 -10.84092 -10.57262 -10.15179 -9.94833 -9.79532 -8.75415 -8.47667 -6.29025 0.03304 0.38163 0.73041 1.19822 1.22175 1.28007 1.40103 2.12339 2.27355 2.46279 2.71010 2.98225 3.83087 3.98430 4.03673 4.16791 4.41784 4.45009 4.49756 4.53741 4.71576 4.76757 4.83143 4.90775 4.95201 5.05623 5.14718 5.18920 5.30930 5.36274 5.40260 5.50403 5.52551 5.62845 5.72645 5.84977 6.06435 6.14969 6.35939 6.86929 7.21834 7.53371 8.49924 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018435 B = 0.006198 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.509057 B = 4516.263669 C = 5435.775337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.089 4.089 3 C -0.170 4.170 4 C -0.110 4.110 5 C -0.122 4.122 6 C 0.519 3.481 7 O -0.579 6.579 8 N -0.411 5.411 9 C -0.364 4.364 10 H 0.132 0.868 11 C 0.066 3.934 12 N -0.869 5.869 13 Si 0.881 3.119 14 H -0.277 1.277 15 H -0.270 1.270 16 H -0.262 1.262 17 C 0.151 3.849 18 C -0.194 4.194 19 C -0.088 4.088 20 C -0.079 4.079 21 Cl -0.072 7.072 22 C -0.094 4.094 23 C -0.161 4.161 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.284 0.716 34 H 0.180 0.820 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 -5.363 0.436 5.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.109 4.109 3 C -0.173 4.173 4 C -0.146 4.146 5 C -0.179 4.179 6 C 0.316 3.684 7 O -0.465 6.465 8 N -0.119 5.119 9 C -0.490 4.490 10 H 0.149 0.851 11 C -0.142 4.142 12 N -0.503 5.503 13 Si 0.706 3.294 14 H -0.203 1.203 15 H -0.195 1.195 16 H -0.186 1.186 17 C 0.054 3.946 18 C -0.214 4.214 19 C -0.107 4.107 20 C -0.107 4.107 21 Cl -0.043 7.043 22 C -0.113 4.113 23 C -0.182 4.182 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.196 0.804 35 H 0.168 0.832 36 H 0.165 0.835 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.013 -5.614 0.396 5.628 hybrid contribution 0.718 0.301 -0.939 1.220 sum 0.731 -5.314 -0.544 5.391 Atomic orbital electron populations 1.20949 0.89600 1.03774 1.03128 1.23723 0.97947 0.96291 0.92950 1.21351 0.90732 0.98046 1.07126 1.21324 0.98923 0.94988 0.99351 1.21548 1.00037 1.00387 0.95939 1.19515 0.89900 0.82278 0.76749 1.90233 1.69226 1.32945 1.54135 1.41366 1.02492 1.07009 1.61055 1.19686 1.28781 0.92313 1.08212 0.85094 1.25688 0.94875 0.94696 0.98921 1.69704 1.44303 1.02574 1.33706 0.86764 0.79717 0.80076 0.82863 1.20327 1.19481 1.18611 1.18902 0.85057 0.94614 0.96050 1.22879 0.94315 1.00319 1.03844 1.21194 0.93504 0.97414 0.98573 1.20864 0.84477 0.95297 1.10037 1.98306 1.10354 1.98943 1.96694 1.20976 0.92866 0.97750 0.99733 1.21132 0.94194 0.98130 1.04715 0.90117 0.89847 0.90360 0.86891 0.87224 0.91137 0.92151 0.94560 0.92802 0.90537 0.80356 0.83209 0.83509 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 8.83 71.24 0.63 -1.95 16 2 C -0.09 -2.76 9.84 24.54 0.24 -2.52 16 3 C -0.17 -6.44 5.19 -18.74 -0.10 -6.53 16 4 C -0.11 -3.97 4.89 29.85 0.15 -3.83 16 5 C -0.12 -4.15 8.38 71.98 0.60 -3.55 16 6 C 0.52 23.37 7.52 86.51 0.65 24.02 16 7 O -0.58 -26.93 12.62 -4.22 -0.05 -26.98 16 8 N -0.41 -19.29 2.03 -464.00 -0.94 -20.23 16 9 C -0.36 -17.26 5.38 84.09 0.45 -16.81 16 10 H 0.13 6.32 3.70 -2.92 -0.01 6.31 16 11 C 0.07 3.19 3.06 84.94 0.26 3.45 16 12 N -0.87 -43.04 13.95 21.67 0.30 -42.74 16 13 Si 0.88 40.13 25.45 68.60 1.75 41.87 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.26 -12.60 5.44 99.48 0.54 -12.06 16 17 C 0.15 6.93 4.61 38.24 0.18 7.10 16 18 C -0.19 -8.26 9.05 22.41 0.20 -8.06 16 19 C -0.09 -3.18 9.82 22.27 0.22 -2.96 16 20 C -0.08 -2.78 6.32 22.36 0.14 -2.64 16 21 Cl -0.07 -2.07 28.95 -2.72 -0.08 -2.15 16 22 C -0.09 -3.52 9.82 22.27 0.22 -3.30 16 23 C -0.16 -7.02 6.64 22.41 0.15 -6.87 16 24 H 0.08 1.64 7.86 -2.39 -0.02 1.62 16 25 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.08 1.64 7.42 -2.39 -0.02 1.62 16 27 H 0.11 3.58 7.50 -2.91 -0.02 3.56 16 28 H 0.11 4.77 4.05 -3.08 -0.01 4.76 16 29 H 0.07 2.17 6.30 -2.39 -0.02 2.15 16 30 H 0.06 1.69 7.90 -2.39 -0.02 1.67 16 31 H 0.04 1.39 6.52 -2.39 -0.02 1.37 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.28 13.30 8.31 -92.71 -0.77 12.53 16 34 H 0.18 7.96 4.51 -63.80 -0.29 7.67 16 35 H 0.15 4.52 8.06 -2.91 -0.02 4.49 16 36 H 0.15 4.71 8.06 -2.91 -0.02 4.68 16 37 H 0.13 6.24 4.94 -2.91 -0.01 6.22 16 Total: -1.00 -53.63 303.42 5.63 -48.00 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.67 Total: 26.67 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 3.99 Total: -24.43 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -0.64 Total: -62.97 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.05 Total: -26.98 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.75 Total: 41.87 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.08 Total: -2.15 kcal Total: -53.63 5.63 -48.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843610314.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.763 kcal (2) G-P(sol) polarization free energy of solvation -53.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds