Wall clock time and date at job start Tue Mar 31 2020 07:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50705 * 119.99614 * 2 1 4 4 C 1.33149 * 119.99970 * 180.02562 * 2 1 3 5 5 C 1.50704 * 119.99929 * 189.53633 * 4 2 1 6 6 C 1.46901 * 120.00134 * 9.52947 * 4 2 1 7 7 O 1.21655 * 120.00321 * 231.82377 * 6 4 2 8 8 N 1.34776 * 119.99491 * 51.82441 * 6 4 2 9 9 C 1.36865 * 119.99577 * 184.04742 * 8 6 4 10 10 H 1.08002 * 120.00158 * 215.01296 * 9 8 6 11 11 C 1.39001 * 120.00351 * 35.01713 * 9 8 6 12 12 N 1.31372 * 119.99500 * 21.93149 * 11 9 8 13 13 Si 1.86793 * 120.00060 * 201.93999 * 11 9 8 14 14 H 1.48492 * 109.47716 * 89.99624 * 13 11 9 15 15 H 1.48508 * 109.46864 * 209.99865 * 13 11 9 16 16 H 1.48501 * 109.47364 * 329.99241 * 13 11 9 17 17 C 1.39705 * 120.00532 * 4.05379 * 8 6 4 18 18 C 1.38989 * 120.06777 * 22.29930 * 17 8 6 19 19 C 1.38059 * 119.93314 * 180.28025 * 18 17 8 20 20 C 1.38428 * 120.06751 * 359.45274 * 19 18 17 21 21 Cl 1.73593 * 119.93325 * 180.30085 * 20 19 18 22 22 C 1.38422 * 120.13422 * 0.27641 * 20 19 18 23 23 C 1.38063 * 120.06704 * 359.97438 * 22 20 19 24 24 H 1.09005 * 109.47069 * 275.62701 * 1 2 3 25 25 H 1.09003 * 109.47727 * 35.61950 * 1 2 3 26 26 H 1.08996 * 109.47468 * 155.62629 * 1 2 3 27 27 H 1.08997 * 109.47421 * 274.58870 * 3 2 1 28 28 H 1.08997 * 109.47177 * 34.59619 * 3 2 1 29 29 H 1.09000 * 109.46756 * 154.59228 * 3 2 1 30 30 H 1.08997 * 109.47133 * 185.94137 * 5 4 2 31 31 H 1.09003 * 109.46966 * 305.94622 * 5 4 2 32 32 H 1.09006 * 109.47273 * 65.93768 * 5 4 2 33 33 H 0.97005 * 119.99644 * 184.97180 * 12 11 9 34 34 H 1.07997 * 120.03172 * 0.02562 * 18 17 8 35 35 H 1.08002 * 119.97065 * 179.72920 * 19 18 17 36 36 H 1.07993 * 119.97008 * 180.02562 * 22 20 19 37 37 H 1.08000 * 120.03639 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1727 -1.1531 -0.0005 5 6 3.6641 -1.1622 0.2157 6 6 1.4534 -2.4164 -0.2117 7 8 1.5969 -3.3364 0.5713 8 7 0.6346 -2.5563 -1.2730 9 6 -0.0989 -3.7018 -1.4251 10 1 -0.2875 -4.0951 -2.4131 11 6 -0.6012 -4.3589 -0.3080 12 7 -0.7615 -3.7064 0.8210 13 14 -1.0481 -6.1696 -0.4119 14 1 0.1353 -6.9929 -0.0561 15 1 -2.1561 -6.4610 0.5330 16 1 -1.4792 -6.4945 -1.7953 17 6 0.5346 -1.5322 -2.2180 18 6 1.5608 -0.6042 -2.3504 19 6 1.4565 0.4101 -3.2811 20 6 0.3364 0.4968 -4.0899 21 17 0.2124 1.7690 -5.2645 22 6 -0.6848 -0.4293 -3.9643 23 6 -0.5886 -1.4428 -3.0318 24 1 -0.3633 0.1008 1.0228 25 1 -0.3635 0.8354 -0.5985 26 1 -0.3634 -0.9360 -0.4241 27 1 2.3709 1.6610 -1.0243 28 1 1.7095 2.0428 0.5835 29 1 3.2460 1.1557 0.4409 30 1 4.0451 -2.1741 0.0778 31 1 4.1394 -0.4939 -0.5024 32 1 3.8866 -0.8250 1.2281 33 1 -1.0433 -4.1802 1.6191 34 1 2.4370 -0.6740 -1.7229 35 1 2.2515 1.1342 -3.3815 36 1 -1.5572 -0.3594 -4.5970 37 1 -1.3854 -2.1653 -2.9346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843611225.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:24 Heat of formation + Delta-G solvation = 20.175061 kcal Electronic energy + Delta-G solvation = -22387.698482 eV Core-core repulsion = 19157.148874 eV Total energy + Delta-G solvation = -3230.549607 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.12470 -39.25541 -37.53542 -37.25129 -35.96299 -33.94369 -31.75578 -31.28689 -29.97238 -28.99365 -27.15094 -25.60185 -23.64947 -23.20630 -21.96562 -19.64031 -19.15984 -17.60983 -17.19862 -16.77995 -16.28850 -16.16188 -15.77055 -15.24844 -15.17914 -14.89925 -14.50162 -14.05080 -13.85572 -13.68303 -13.52593 -13.39341 -13.20042 -13.12827 -12.90359 -12.75801 -12.69379 -12.43183 -12.28973 -12.12489 -12.06856 -11.98677 -11.54922 -11.19291 -10.53672 -9.99033 -9.90929 -9.12930 -8.64966 -8.28547 -6.10538 0.26783 0.51044 0.91955 1.35079 1.39954 1.42183 1.47483 2.24608 2.41273 2.85125 2.98330 3.30091 3.87369 4.02736 4.06417 4.14481 4.27601 4.47065 4.58151 4.66985 4.69704 4.75995 4.79481 4.83622 4.97798 5.01505 5.07443 5.17235 5.19759 5.28613 5.32118 5.39935 5.49202 5.62197 5.65474 5.91831 5.93478 6.09216 6.80142 6.96231 7.45688 8.05153 8.68536 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.006876 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.836301 B = 4071.447936 C = 5261.879740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 C -0.116 4.116 4 C -0.201 4.201 5 C -0.089 4.089 6 C 0.509 3.491 7 O -0.557 6.557 8 N -0.405 5.405 9 C -0.379 4.379 10 H 0.091 0.909 11 C 0.027 3.973 12 N -0.850 5.850 13 Si 0.972 3.028 14 H -0.288 1.288 15 H -0.280 1.280 16 H -0.252 1.252 17 C 0.167 3.833 18 C -0.177 4.177 19 C -0.073 4.073 20 C -0.084 4.084 21 Cl -0.077 7.077 22 C -0.080 4.080 23 C -0.162 4.162 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.264 0.736 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.143 0.857 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.706 12.519 -7.014 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.066 4.066 3 C -0.172 4.172 4 C -0.204 4.204 5 C -0.146 4.146 6 C 0.302 3.698 7 O -0.436 6.436 8 N -0.113 5.113 9 C -0.505 4.505 10 H 0.109 0.891 11 C -0.182 4.182 12 N -0.483 5.483 13 Si 0.796 3.204 14 H -0.214 1.214 15 H -0.205 1.205 16 H -0.175 1.175 17 C 0.069 3.931 18 C -0.198 4.198 19 C -0.092 4.092 20 C -0.112 4.112 21 Cl -0.048 7.048 22 C -0.099 4.099 23 C -0.184 4.184 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.175 0.825 35 H 0.175 0.825 36 H 0.161 0.839 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.648 12.051 -6.442 14.434 hybrid contribution -0.820 -1.438 0.425 1.708 sum 3.829 10.614 -6.017 12.787 Atomic orbital electron populations 1.21258 0.93438 1.03526 1.01199 1.22223 0.95143 0.95268 0.93943 1.21043 1.00113 0.92048 1.04014 1.21371 0.98392 0.91797 1.08861 1.20623 0.88438 1.02324 1.03184 1.18911 0.79486 0.88798 0.82620 1.90579 1.63566 1.44153 1.45336 1.41397 1.35660 1.13831 1.20453 1.19395 1.33611 1.02717 0.94797 0.89104 1.25939 0.93982 1.03189 0.95074 1.69998 1.39677 1.37266 1.01403 0.85274 0.77173 0.78999 0.78967 1.21432 1.20546 1.17541 1.18578 0.94564 0.88780 0.91225 1.21908 1.00240 0.96555 1.01070 1.20932 0.96964 0.98304 0.93048 1.20715 0.98407 0.94452 0.97644 1.98316 1.98229 1.50645 1.57633 1.20865 0.98545 0.92883 0.97640 1.20824 0.97576 1.00842 0.99155 0.92908 0.90668 0.91891 0.88621 0.90605 0.89593 0.93915 0.87984 0.90041 0.92693 0.82499 0.82511 0.83947 0.86504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.24 8.48 71.24 0.60 -4.64 16 2 C -0.06 -2.13 3.38 -17.59 -0.06 -2.19 16 3 C -0.12 -2.48 9.36 71.24 0.67 -1.82 16 4 C -0.20 -7.77 3.24 -18.74 -0.06 -7.83 16 5 C -0.09 -2.66 8.31 71.24 0.59 -2.07 16 6 C 0.51 26.25 5.36 86.51 0.46 26.72 16 7 O -0.56 -33.95 14.31 -4.21 -0.06 -34.01 16 8 N -0.40 -20.47 1.97 -462.86 -0.91 -21.38 16 9 C -0.38 -20.82 8.06 84.09 0.68 -20.14 16 10 H 0.09 4.81 7.73 -2.91 -0.02 4.79 16 11 C 0.03 1.50 4.27 84.94 0.36 1.87 16 12 N -0.85 -50.64 11.25 21.67 0.24 -50.39 16 13 Si 0.97 44.90 29.61 68.60 2.03 46.94 16 14 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.25 -10.71 7.11 99.48 0.71 -10.00 16 17 C 0.17 6.90 3.63 38.25 0.14 7.04 16 18 C -0.18 -5.91 5.88 22.41 0.13 -5.78 16 19 C -0.07 -1.97 9.21 22.27 0.21 -1.77 16 20 C -0.08 -2.34 6.32 22.36 0.14 -2.20 16 21 Cl -0.08 -1.79 28.95 -2.72 -0.08 -1.87 16 22 C -0.08 -2.47 9.82 22.27 0.22 -2.25 16 23 C -0.16 -6.26 9.20 22.41 0.21 -6.06 16 24 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 25 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.06 2.95 4.17 -2.39 -0.01 2.94 16 27 H 0.10 1.70 7.19 -2.39 -0.02 1.68 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 1.54 6.37 -2.39 -0.02 1.52 16 30 H 0.04 1.44 7.99 -2.39 -0.02 1.42 16 31 H 0.10 2.19 7.14 -2.39 -0.02 2.17 16 32 H 0.08 2.17 8.03 -2.38 -0.02 2.15 16 33 H 0.26 15.24 8.32 -92.70 -0.77 14.47 16 34 H 0.16 5.04 3.48 -3.05 -0.01 5.03 16 35 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 37 H 0.12 4.89 7.16 -2.91 -0.02 4.87 16 Total: -1.00 -69.53 310.04 6.61 -62.92 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 1.09 Total: 18.91 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 4.29 Total: -21.12 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -0.67 Total: -71.78 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.06 Total: -34.01 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.08 Total: -1.87 kcal Total: -69.53 6.61 -62.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843611225.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.099 kcal (2) G-P(sol) polarization free energy of solvation -69.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds