Wall clock time and date at job start Tue Mar 31 2020 07:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.46764 * 2 1 4 4 C 1.50708 * 119.99912 * 268.22878 * 3 2 1 5 5 C 1.33155 * 120.00273 * 88.22909 * 3 2 1 6 6 C 1.46901 * 119.99816 * 351.85702 * 5 3 2 7 7 O 1.21653 * 119.99940 * 357.21514 * 6 5 3 8 8 N 1.34776 * 119.99737 * 177.21749 * 6 5 3 9 9 C 1.36863 * 120.00348 * 4.32243 * 8 6 5 10 10 H 1.08004 * 119.99931 * 307.67323 * 9 8 6 11 11 C 1.39002 * 120.00167 * 127.66717 * 9 8 6 12 12 N 1.31364 * 119.99963 * 1.24772 * 11 9 8 13 13 Si 1.86802 * 119.99944 * 181.24983 * 11 9 8 14 14 H 1.48503 * 109.47068 * 359.97438 * 13 11 9 15 15 H 1.48487 * 109.47096 * 120.00226 * 13 11 9 16 16 H 1.48506 * 109.46539 * 240.00227 * 13 11 9 17 17 C 1.39712 * 119.99741 * 184.31737 * 8 6 5 18 18 C 1.38988 * 120.06511 * 171.05856 * 17 8 6 19 19 C 1.38061 * 119.93254 * 180.28016 * 18 17 8 20 20 C 1.38432 * 120.06483 * 359.49488 * 19 18 17 21 21 Cl 1.73600 * 119.93222 * 180.25703 * 20 19 18 22 22 C 1.38427 * 120.13395 * 0.50581 * 20 19 18 23 23 C 1.38061 * 120.06746 * 359.74779 * 22 20 19 24 24 H 1.09004 * 109.46709 * 300.00256 * 1 2 3 25 25 H 1.08997 * 109.46977 * 59.99735 * 1 2 3 26 26 H 1.08995 * 109.46685 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46958 * 240.00217 * 2 1 3 28 28 H 1.09002 * 109.47263 * 119.99592 * 2 1 3 29 29 H 1.08999 * 109.46572 * 270.00346 * 4 3 2 30 30 H 1.08996 * 109.46889 * 29.99902 * 4 3 2 31 31 H 1.08997 * 109.47424 * 150.00533 * 4 3 2 32 32 H 1.08001 * 119.99969 * 171.85256 * 5 3 2 33 33 H 0.96995 * 120.00132 * 185.00721 * 12 11 9 34 34 H 1.08004 * 120.03489 * 359.97438 * 18 17 8 35 35 H 1.08000 * 119.96916 * 179.74483 * 19 18 17 36 36 H 1.07997 * 119.96269 * 179.73080 * 22 20 19 37 37 H 1.08000 * 120.03381 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3215 2.1178 -1.3046 5 6 2.2206 2.0605 1.1526 6 6 1.7728 1.4515 2.4122 7 8 1.1849 0.3866 2.3977 8 7 2.0134 2.0727 3.5838 9 6 2.5954 3.3114 3.5949 10 1 3.5170 3.4798 3.0575 11 6 2.0003 4.3526 4.2976 12 7 0.8924 4.1417 4.9713 13 14 2.7760 6.0519 4.2841 14 1 4.0097 6.0263 3.4578 15 1 1.8163 7.0296 3.7114 16 1 3.1192 6.4504 5.6729 17 6 1.6686 1.4521 4.7871 18 6 2.0800 2.0004 5.9962 19 6 1.7426 1.3817 7.1835 20 6 0.9864 0.2222 7.1708 21 17 0.5585 -0.5492 8.6660 22 6 0.5752 -0.3262 5.9682 23 6 0.9139 0.2850 4.7775 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.3596 1.9434 -1.5872 30 1 1.6631 1.7257 -2.0797 31 1 2.1510 3.1883 -1.1902 32 1 2.7026 3.0269 1.1613 33 1 0.4378 4.8827 5.4014 34 1 2.6672 2.9068 6.0069 35 1 2.0654 1.8049 8.1232 36 1 -0.0109 -1.2333 5.9614 37 1 0.5931 -0.1436 3.8395 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843611670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:29 Heat of formation + Delta-G solvation = 12.376123 kcal Electronic energy + Delta-G solvation = -21441.054009 eV Core-core repulsion = 18210.166215 eV Total energy + Delta-G solvation = -3230.887795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.92441 -37.80146 -36.12374 -35.22665 -34.75070 -31.99236 -30.48460 -29.89138 -29.03142 -27.11930 -25.25409 -23.36796 -22.01582 -21.56168 -19.94330 -18.51843 -16.95431 -16.56295 -15.83419 -15.41459 -14.76442 -14.29652 -14.25028 -13.84516 -13.41408 -13.31046 -13.17987 -12.64055 -12.51088 -12.35244 -12.17181 -11.95238 -11.81951 -11.67994 -11.51087 -11.19526 -11.07323 -10.78756 -10.62692 -10.49876 -10.42959 -10.28219 -9.96375 -9.23270 -8.74393 -8.49116 -8.10002 -7.95989 -6.91801 -6.38065 -4.54010 1.81814 2.40999 2.46887 2.96952 3.00244 3.08652 3.11589 3.86471 4.14489 4.48001 4.67958 5.04858 5.21597 5.37634 5.66108 5.71913 5.78483 5.81753 5.83419 6.02347 6.06941 6.12966 6.17258 6.35249 6.45934 6.51597 6.65367 6.77110 6.84636 6.96317 7.04521 7.14170 7.17132 7.24608 7.37263 7.54170 7.63074 7.97042 8.31350 8.77615 9.17432 9.55226 10.42336 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.006518 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.525352 B = 4294.591652 C = 6300.120534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.092 4.092 3 C -0.074 4.074 4 C -0.117 4.117 5 C -0.180 4.180 6 C 0.519 3.481 7 O -0.555 6.555 8 N -0.379 5.379 9 C -0.366 4.366 10 H 0.096 0.904 11 C 0.053 3.947 12 N -0.841 5.841 13 Si 0.918 3.082 14 H -0.265 1.265 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.198 3.802 18 C -0.083 4.083 19 C -0.110 4.110 20 C -0.081 4.081 21 Cl -0.115 7.115 22 C -0.107 4.107 23 C -0.180 4.180 24 H 0.069 0.931 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.130 0.870 33 H 0.276 0.724 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.037 -2.636 -4.535 5.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.129 4.129 3 C -0.076 4.076 4 C -0.174 4.174 5 C -0.200 4.200 6 C 0.315 3.685 7 O -0.441 6.441 8 N -0.084 5.084 9 C -0.493 4.493 10 H 0.113 0.887 11 C -0.157 4.157 12 N -0.473 5.473 13 Si 0.743 3.257 14 H -0.189 1.189 15 H -0.202 1.202 16 H -0.202 1.202 17 C 0.100 3.900 18 C -0.104 4.104 19 C -0.130 4.130 20 C -0.109 4.109 21 Cl -0.087 7.087 22 C -0.126 4.126 23 C -0.199 4.199 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.118 0.882 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.148 0.852 33 H 0.086 0.914 34 H 0.150 0.850 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.624 -3.048 -4.304 5.518 hybrid contribution 0.175 1.265 0.451 1.355 sum 1.799 -1.782 -3.852 4.610 Atomic orbital electron populations 1.21549 0.94908 1.00889 1.01440 1.20827 0.96676 0.92957 1.02463 1.22403 0.95062 0.95962 0.94192 1.20864 1.01554 1.00238 0.94722 1.22489 1.03915 1.02033 0.91594 1.18877 0.80254 0.84661 0.84735 1.90250 1.43649 1.24033 1.86205 1.40928 1.50009 1.15673 1.01811 1.19388 1.08879 0.84442 1.36591 0.88657 1.25653 0.95318 0.99968 0.94758 1.69940 1.15756 1.32717 1.28842 0.85997 0.79432 0.81626 0.78621 1.18854 1.20228 1.20205 1.18230 0.93971 0.90759 0.87056 1.20699 1.00805 0.99201 0.89713 1.20596 0.99716 0.94552 0.98106 1.20673 1.06938 0.97944 0.85296 1.98270 1.92887 1.81712 1.35785 1.20753 1.01024 1.00146 0.90705 1.22687 1.00285 0.96684 1.00293 0.91235 0.94480 0.93458 0.93398 0.88228 0.91421 0.91736 0.91528 0.85176 0.91370 0.85002 0.86805 0.86746 0.80236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.38 37.16 0.35 -1.70 16 2 C -0.09 -1.46 5.33 -27.88 -0.15 -1.61 16 3 C -0.07 -1.19 5.36 -101.11 -0.54 -1.73 16 4 C -0.12 -1.44 10.03 36.01 0.36 -1.07 16 5 C -0.18 -3.40 8.92 -37.85 -0.34 -3.74 16 6 C 0.52 11.56 7.40 -12.75 -0.09 11.46 16 7 O -0.55 -12.33 7.70 5.23 0.04 -12.29 16 8 N -0.38 -9.06 2.70 -60.28 -0.16 -9.23 16 9 C -0.37 -8.61 7.24 -15.02 -0.11 -8.72 16 10 H 0.10 2.13 7.31 -52.48 -0.38 1.75 16 11 C 0.05 1.24 4.06 -17.47 -0.07 1.17 16 12 N -0.84 -21.20 10.93 55.50 0.61 -20.59 16 13 Si 0.92 18.13 29.56 -169.99 -5.02 13.10 16 14 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 15 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 16 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 17 C 0.20 4.77 5.67 -83.71 -0.48 4.29 16 18 C -0.08 -1.92 7.54 -39.37 -0.30 -2.21 16 19 C -0.11 -2.30 9.82 -39.57 -0.39 -2.69 16 20 C -0.08 -1.65 6.32 -39.44 -0.25 -1.90 16 21 Cl -0.11 -2.01 28.95 -51.86 -1.50 -3.51 16 22 C -0.11 -2.21 9.82 -39.58 -0.39 -2.60 16 23 C -0.18 -4.09 9.03 -39.37 -0.36 -4.45 16 24 H 0.07 1.30 6.55 -51.93 -0.34 0.96 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 28 H 0.10 1.81 5.82 -51.93 -0.30 1.51 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 31 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.13 2.39 6.80 -52.49 -0.36 2.04 16 33 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.13 3.14 5.92 -52.48 -0.31 2.83 16 35 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.11 2.10 8.06 -52.49 -0.42 1.68 16 37 H 0.18 4.16 4.58 -56.02 -0.26 3.91 16 LS Contribution 317.20 15.07 4.78 4.78 Total: -1.00 -25.43 317.20 -8.47 -33.90 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -4.46 Total: 9.31 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -2.75 Total: -15.48 kcal Atomic # 7 Polarization: -30.26 SS G_CDS: 0.44 Total: -29.82 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.04 Total: -12.29 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.02 Total: 13.10 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -1.50 Total: -3.51 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -25.43 -8.47 -33.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843611670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.275 kcal (2) G-P(sol) polarization free energy of solvation -25.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds