Wall clock time and date at job start Tue Mar 31 2020 07:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46997 * 2 1 4 4 C 1.50705 * 119.99766 * 274.99526 * 3 2 1 5 5 C 1.33153 * 120.00140 * 94.99677 * 3 2 1 6 6 C 1.46906 * 119.99969 * 187.03668 * 5 3 2 7 7 O 1.21657 * 119.99710 * 5.13039 * 6 5 3 8 8 N 1.34774 * 120.00034 * 185.12862 * 6 5 3 9 9 C 1.36862 * 120.00100 * 354.89072 * 8 6 5 10 10 H 1.08004 * 119.99941 * 344.21572 * 9 8 6 11 11 C 1.38998 * 120.00086 * 164.21662 * 9 8 6 12 12 N 1.31368 * 119.99948 * 355.26412 * 11 9 8 13 13 Si 1.86800 * 119.99941 * 175.26334 * 11 9 8 14 14 H 1.48500 * 109.47192 * 90.00239 * 13 11 9 15 15 H 1.48497 * 109.47142 * 210.00333 * 13 11 9 16 16 H 1.48507 * 109.46908 * 330.00021 * 13 11 9 17 17 C 1.39709 * 120.00029 * 174.88300 * 8 6 5 18 18 C 1.38991 * 120.06433 * 99.45101 * 17 8 6 19 19 C 1.38062 * 119.92788 * 179.76507 * 18 17 8 20 20 C 1.38423 * 120.07109 * 0.49423 * 19 18 17 21 21 Cl 1.73597 * 119.93570 * 179.74648 * 20 19 18 22 22 C 1.38423 * 120.13222 * 359.75607 * 20 19 18 23 23 C 1.38061 * 120.07145 * 0.02562 * 22 20 19 24 24 H 1.09002 * 109.46959 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47627 * 300.00171 * 1 2 3 26 26 H 1.09002 * 109.46616 * 60.00917 * 1 2 3 27 27 H 1.08995 * 109.47627 * 239.99829 * 2 1 3 28 28 H 1.09002 * 109.46616 * 119.99083 * 2 1 3 29 29 H 1.09001 * 109.46873 * 95.85449 * 4 3 2 30 30 H 1.08997 * 109.46932 * 215.84721 * 4 3 2 31 31 H 1.09002 * 109.47035 * 335.85224 * 4 3 2 32 32 H 1.07998 * 120.00098 * 7.03067 * 5 3 2 33 33 H 0.96998 * 120.00157 * 185.00724 * 12 11 9 34 34 H 1.07998 * 120.03683 * 0.02562 * 18 17 8 35 35 H 1.07998 * 119.96471 * 180.23018 * 19 18 17 36 36 H 1.08005 * 119.96416 * 179.97438 * 22 20 19 37 37 H 1.07995 * 120.03739 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1763 2.1691 -1.3002 5 6 2.3489 2.0151 1.1487 6 6 2.6898 3.4439 1.1670 7 8 2.5928 4.1055 0.1507 8 7 3.1101 4.0219 2.3098 9 6 3.1198 3.3053 3.4757 10 1 2.5655 2.3810 3.5462 11 6 3.8430 3.7670 4.5693 12 7 4.5914 4.8406 4.4559 13 14 3.7507 2.8608 6.2001 14 1 4.8121 1.8234 6.2508 15 1 3.9463 3.8239 7.3133 16 1 2.4201 2.2146 6.3327 17 6 3.5359 5.3525 2.3041 18 6 2.6757 6.3607 2.7229 19 6 3.1011 7.6741 2.7207 20 6 4.3793 7.9885 2.2923 21 17 4.9083 9.6419 2.2848 22 6 5.2365 6.9871 1.8698 23 6 4.8186 5.6713 1.8739 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5137 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.2854 2.7730 -1.4724 30 1 3.0509 2.8177 -1.2512 31 1 2.2967 1.4578 -2.1174 32 1 2.3550 1.4467 2.0670 33 1 5.1521 5.1214 5.1959 34 1 1.6771 6.1165 3.0536 35 1 2.4345 8.4576 3.0495 36 1 6.2331 7.2355 1.5357 37 1 5.4876 4.8906 1.5437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843611671.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:34 Heat of formation + Delta-G solvation = 4.523672 kcal Electronic energy + Delta-G solvation = -21191.029354 eV Core-core repulsion = 17959.801052 eV Total energy + Delta-G solvation = -3231.228302 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.56156 -37.79371 -36.12730 -35.39153 -34.59948 -31.73035 -30.55036 -30.13766 -28.98216 -26.90424 -25.01043 -23.84342 -21.93374 -21.84627 -19.68264 -18.58369 -17.04208 -16.40140 -15.97763 -14.96782 -14.77270 -14.51838 -14.32783 -13.93864 -13.47045 -13.34076 -13.06675 -12.64256 -12.55704 -12.51450 -12.09380 -11.80706 -11.72327 -11.45268 -11.26673 -11.20804 -11.00755 -10.90920 -10.63922 -10.61761 -10.49720 -10.25643 -10.14225 -9.52238 -8.49390 -8.41743 -8.12337 -8.02745 -7.64703 -6.26118 -4.09286 2.09274 2.21591 2.33445 2.85115 3.06618 3.13392 3.15800 3.95047 4.20951 4.54888 4.66789 5.04581 5.15525 5.25016 5.50811 5.66087 5.68579 5.69982 5.82757 5.93796 6.04724 6.21452 6.24015 6.27929 6.31025 6.34956 6.40361 6.52961 6.75591 6.85148 6.96076 7.10687 7.13034 7.23907 7.29939 7.48231 7.59564 7.78302 8.33419 8.92051 9.28237 9.71995 10.53635 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.013752 B = 0.005684 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.630824 B = 4924.910391 C = 6538.144097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.083 4.083 4 C -0.108 4.108 5 C -0.176 4.176 6 C 0.492 3.508 7 O -0.590 6.590 8 N -0.413 5.413 9 C -0.341 4.341 10 H 0.106 0.894 11 C 0.039 3.961 12 N -0.856 5.856 13 Si 0.925 3.075 14 H -0.276 1.276 15 H -0.281 1.281 16 H -0.269 1.269 17 C 0.262 3.738 18 C -0.110 4.110 19 C -0.105 4.105 20 C -0.055 4.055 21 Cl -0.107 7.107 22 C -0.107 4.107 23 C -0.064 4.064 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.124 0.876 33 H 0.274 0.726 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.377 -2.722 -3.358 4.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 C -0.085 4.085 4 C -0.165 4.165 5 C -0.197 4.197 6 C 0.286 3.714 7 O -0.477 6.477 8 N -0.129 5.129 9 C -0.467 4.467 10 H 0.123 0.877 11 C -0.168 4.168 12 N -0.492 5.492 13 Si 0.752 3.248 14 H -0.202 1.202 15 H -0.207 1.207 16 H -0.194 1.194 17 C 0.171 3.829 18 C -0.131 4.131 19 C -0.125 4.125 20 C -0.081 4.081 21 Cl -0.079 7.079 22 C -0.126 4.126 23 C -0.084 4.084 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.142 0.858 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.282 -2.091 -3.647 4.783 hybrid contribution 0.229 -0.340 1.369 1.429 sum -2.053 -2.431 -2.278 3.913 Atomic orbital electron populations 1.21706 0.94926 1.01176 1.02350 1.20609 0.96008 0.93522 1.02320 1.22279 0.95528 0.95175 0.95550 1.20963 1.04241 0.98667 0.92591 1.22539 1.04006 0.94920 0.98211 1.18242 0.82730 0.88007 0.82468 1.90649 1.59213 1.65208 1.32629 1.41265 1.56051 1.07581 1.08000 1.19716 1.31746 1.07260 0.87994 0.87684 1.25345 0.95403 0.96158 0.99861 1.69790 1.24440 1.22183 1.32836 0.85933 0.78890 0.78918 0.81102 1.20195 1.20657 1.19363 1.17110 0.91143 0.83864 0.90782 1.20891 0.99474 0.91504 1.01187 1.20515 0.94201 0.96255 1.01508 1.20524 0.95804 0.83385 1.08387 1.98283 1.90909 1.21012 1.97702 1.20516 0.98562 0.91743 1.01812 1.20739 0.94771 0.94630 0.98258 0.92783 0.92398 0.92647 0.91487 0.91299 0.91504 0.89325 0.94237 0.85826 0.91403 0.86717 0.86585 0.86572 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.89 37.16 0.37 -1.31 16 2 C -0.09 -1.13 6.10 -27.88 -0.17 -1.30 16 3 C -0.08 -1.39 5.37 -101.12 -0.54 -1.93 16 4 C -0.11 -1.83 8.48 36.01 0.31 -1.53 16 5 C -0.18 -3.45 8.90 -37.85 -0.34 -3.79 16 6 C 0.49 11.50 7.40 -12.75 -0.09 11.40 16 7 O -0.59 -14.67 13.23 5.23 0.07 -14.60 16 8 N -0.41 -10.05 2.65 -60.28 -0.16 -10.21 16 9 C -0.34 -8.20 9.19 -15.02 -0.14 -8.34 16 10 H 0.11 2.36 5.90 -52.48 -0.31 2.05 16 11 C 0.04 0.93 5.39 -17.47 -0.09 0.83 16 12 N -0.86 -21.31 9.82 55.50 0.55 -20.76 16 13 Si 0.93 18.80 29.56 -169.99 -5.02 13.78 16 14 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 15 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 16 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 17 C 0.26 6.30 2.22 -83.71 -0.19 6.11 16 18 C -0.11 -2.49 9.74 -39.37 -0.38 -2.88 16 19 C -0.11 -2.14 9.82 -39.58 -0.39 -2.53 16 20 C -0.05 -1.08 6.32 -39.44 -0.25 -1.33 16 21 Cl -0.11 -1.82 28.95 -51.86 -1.50 -3.33 16 22 C -0.11 -2.18 9.82 -39.58 -0.39 -2.57 16 23 C -0.06 -1.47 8.67 -39.37 -0.34 -1.81 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 28 H 0.07 0.85 7.99 -51.93 -0.41 0.44 16 29 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 30 H 0.09 1.74 6.12 -51.93 -0.32 1.42 16 31 H 0.04 0.55 8.03 -51.93 -0.42 0.13 16 32 H 0.12 2.30 6.12 -52.49 -0.32 1.98 16 33 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.11 2.53 8.06 -52.49 -0.42 2.10 16 35 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 36 H 0.12 2.09 8.06 -52.48 -0.42 1.67 16 37 H 0.11 2.58 8.06 -52.49 -0.42 2.15 16 LS Contribution 328.09 15.07 4.94 4.94 Total: -1.00 -26.63 328.09 -8.48 -35.11 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -4.71 Total: 6.03 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -2.64 Total: -10.97 kcal Atomic # 7 Polarization: -31.36 SS G_CDS: 0.39 Total: -30.97 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.07 Total: -14.60 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -1.50 Total: -3.33 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.63 -8.48 -35.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843611671.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.636 kcal (2) G-P(sol) polarization free energy of solvation -26.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds