Wall clock time and date at job start Tue Mar 31 2020 07:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46997 * 2 1 4 4 C 1.50705 * 119.99766 * 274.99526 * 3 2 1 5 5 C 1.33153 * 120.00140 * 94.99677 * 3 2 1 6 6 C 1.46906 * 119.99969 * 187.03668 * 5 3 2 7 7 O 1.21657 * 119.99710 * 5.13039 * 6 5 3 8 8 N 1.34774 * 120.00034 * 185.12862 * 6 5 3 9 9 C 1.36862 * 120.00100 * 354.89072 * 8 6 5 10 10 H 1.08004 * 119.99941 * 344.21572 * 9 8 6 11 11 C 1.38998 * 120.00086 * 164.21662 * 9 8 6 12 12 N 1.31368 * 119.99948 * 355.26412 * 11 9 8 13 13 Si 1.86800 * 119.99941 * 175.26334 * 11 9 8 14 14 H 1.48500 * 109.47192 * 90.00239 * 13 11 9 15 15 H 1.48497 * 109.47142 * 210.00333 * 13 11 9 16 16 H 1.48507 * 109.46908 * 330.00021 * 13 11 9 17 17 C 1.39709 * 120.00029 * 174.88300 * 8 6 5 18 18 C 1.38991 * 120.06433 * 99.45101 * 17 8 6 19 19 C 1.38062 * 119.92788 * 179.76507 * 18 17 8 20 20 C 1.38423 * 120.07109 * 0.49423 * 19 18 17 21 21 Cl 1.73597 * 119.93570 * 179.74648 * 20 19 18 22 22 C 1.38423 * 120.13222 * 359.75607 * 20 19 18 23 23 C 1.38061 * 120.07145 * 0.02562 * 22 20 19 24 24 H 1.09002 * 109.46959 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47627 * 300.00171 * 1 2 3 26 26 H 1.09002 * 109.46616 * 60.00917 * 1 2 3 27 27 H 1.08995 * 109.47627 * 239.99829 * 2 1 3 28 28 H 1.09002 * 109.46616 * 119.99083 * 2 1 3 29 29 H 1.09001 * 109.46873 * 95.85449 * 4 3 2 30 30 H 1.08997 * 109.46932 * 215.84721 * 4 3 2 31 31 H 1.09002 * 109.47035 * 335.85224 * 4 3 2 32 32 H 1.07998 * 120.00098 * 7.03067 * 5 3 2 33 33 H 0.96998 * 120.00157 * 185.00724 * 12 11 9 34 34 H 1.07998 * 120.03683 * 0.02562 * 18 17 8 35 35 H 1.07998 * 119.96471 * 180.23018 * 19 18 17 36 36 H 1.08005 * 119.96416 * 179.97438 * 22 20 19 37 37 H 1.07995 * 120.03739 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1763 2.1691 -1.3002 5 6 2.3489 2.0151 1.1487 6 6 2.6898 3.4439 1.1670 7 8 2.5928 4.1055 0.1507 8 7 3.1101 4.0219 2.3098 9 6 3.1198 3.3053 3.4757 10 1 2.5655 2.3810 3.5462 11 6 3.8430 3.7670 4.5693 12 7 4.5914 4.8406 4.4559 13 14 3.7507 2.8608 6.2001 14 1 4.8121 1.8234 6.2508 15 1 3.9463 3.8239 7.3133 16 1 2.4201 2.2146 6.3327 17 6 3.5359 5.3525 2.3041 18 6 2.6757 6.3607 2.7229 19 6 3.1011 7.6741 2.7207 20 6 4.3793 7.9885 2.2923 21 17 4.9083 9.6419 2.2848 22 6 5.2365 6.9871 1.8698 23 6 4.8186 5.6713 1.8739 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5137 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.2854 2.7730 -1.4724 30 1 3.0509 2.8177 -1.2512 31 1 2.2967 1.4578 -2.1174 32 1 2.3550 1.4467 2.0670 33 1 5.1521 5.1214 5.1959 34 1 1.6771 6.1165 3.0536 35 1 2.4345 8.4576 3.0495 36 1 6.2331 7.2355 1.5357 37 1 5.4876 4.8906 1.5437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843611671.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:33 Heat of formation + Delta-G solvation = -6.586339 kcal Electronic energy + Delta-G solvation = -21191.511121 eV Core-core repulsion = 17959.801052 eV Total energy + Delta-G solvation = -3231.710069 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.28472 -39.43073 -37.62544 -36.82590 -36.28560 -33.54263 -31.81666 -31.79464 -30.57542 -28.41269 -26.81353 -25.07553 -23.57743 -23.40484 -21.35024 -20.22390 -18.59890 -18.04161 -17.62330 -16.70945 -16.52065 -16.13195 -15.60426 -15.34346 -15.01898 -14.89029 -14.50663 -14.29077 -14.12056 -13.91343 -13.55663 -13.30479 -13.12830 -12.93726 -12.87908 -12.74615 -12.49324 -12.20695 -12.16790 -12.06501 -11.90333 -11.69973 -11.66701 -11.27698 -10.20353 -10.03994 -9.78307 -9.71474 -9.34090 -8.03979 -5.94486 0.49981 0.62249 0.65714 1.29082 1.45765 1.47599 1.57094 2.26447 2.49267 2.91019 2.95951 3.25418 3.96652 4.03886 4.07283 4.09263 4.38496 4.50232 4.52109 4.60084 4.70558 4.75161 4.85933 4.89798 4.95646 5.10286 5.15391 5.16369 5.25734 5.29901 5.41311 5.42602 5.43709 5.72617 5.75078 5.87519 5.89941 6.04283 6.54069 7.10278 7.50901 7.94053 8.73222 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.013752 B = 0.005684 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.630824 B = 4924.910391 C = 6538.144097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.052 4.052 4 C -0.108 4.108 5 C -0.214 4.214 6 C 0.481 3.519 7 O -0.617 6.617 8 N -0.427 5.427 9 C -0.356 4.356 10 H 0.114 0.886 11 C -0.002 4.002 12 N -0.878 5.878 13 Si 0.989 3.011 14 H -0.273 1.273 15 H -0.287 1.287 16 H -0.260 1.260 17 C 0.240 3.760 18 C -0.131 4.131 19 C -0.101 4.101 20 C -0.057 4.057 21 Cl -0.076 7.076 22 C -0.103 4.103 23 C -0.085 4.085 24 H 0.081 0.919 25 H 0.044 0.956 26 H 0.055 0.945 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.270 0.730 34 H 0.109 0.891 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.847 -3.655 -3.438 5.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.054 4.054 4 C -0.165 4.165 5 C -0.234 4.234 6 C 0.276 3.724 7 O -0.506 6.506 8 N -0.143 5.143 9 C -0.482 4.482 10 H 0.132 0.868 11 C -0.205 4.205 12 N -0.515 5.515 13 Si 0.813 3.187 14 H -0.198 1.198 15 H -0.213 1.213 16 H -0.184 1.184 17 C 0.149 3.851 18 C -0.151 4.151 19 C -0.120 4.120 20 C -0.084 4.084 21 Cl -0.047 7.047 22 C -0.123 4.123 23 C -0.104 4.104 24 H 0.100 0.900 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.148 0.852 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.759 -3.029 -3.733 5.542 hybrid contribution 0.374 0.007 1.252 1.306 sum -2.385 -3.022 -2.481 4.580 Atomic orbital electron populations 1.21697 0.93596 1.02839 1.01800 1.20735 0.96915 0.90629 1.04063 1.22765 0.91447 0.96895 0.94326 1.20924 1.02439 0.99059 0.94039 1.22431 1.08022 0.93211 0.99740 1.18935 0.82006 0.89495 0.81950 1.90611 1.60417 1.66274 1.33343 1.41483 1.56360 1.08008 1.08402 1.20051 1.32161 1.07758 0.88269 0.86820 1.26112 0.94993 0.96874 1.02524 1.69957 1.24986 1.23319 1.33206 0.84963 0.79165 0.77606 0.76953 1.19831 1.21311 1.18392 1.17402 0.91856 0.84239 0.91636 1.20992 0.99351 0.92513 1.02277 1.20786 0.94853 0.95945 1.00436 1.20605 0.95499 0.84940 1.07343 1.98290 1.90586 1.18288 1.97542 1.20755 0.99646 0.90986 1.00875 1.20740 0.94559 0.95508 0.99632 0.90032 0.93695 0.92544 0.88968 0.90367 0.92166 0.92437 0.90576 0.85244 0.91942 0.87253 0.83954 0.84268 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.89 71.98 0.71 -2.19 16 2 C -0.09 -1.98 6.10 29.85 0.18 -1.80 16 3 C -0.05 -1.69 5.37 -17.59 -0.09 -1.78 16 4 C -0.11 -3.60 8.48 71.24 0.60 -2.99 16 5 C -0.21 -8.49 8.90 23.40 0.21 -8.28 16 6 C 0.48 23.41 7.40 86.51 0.64 24.05 16 7 O -0.62 -32.11 13.23 -4.21 -0.06 -32.16 16 8 N -0.43 -21.62 2.65 -462.85 -1.23 -22.84 16 9 C -0.36 -17.59 9.19 84.09 0.77 -16.81 16 10 H 0.11 5.21 5.90 -2.91 -0.02 5.19 16 11 C 0.00 -0.07 5.39 84.94 0.46 0.38 16 12 N -0.88 -44.66 9.82 21.67 0.21 -44.45 16 13 Si 0.99 38.75 29.56 68.60 2.03 40.78 16 14 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 15 H -0.29 -11.45 7.11 99.48 0.71 -10.74 16 16 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 17 C 0.24 11.96 2.22 38.25 0.08 12.04 16 18 C -0.13 -6.09 9.74 22.41 0.22 -5.88 16 19 C -0.10 -4.07 9.82 22.27 0.22 -3.85 16 20 C -0.06 -2.23 6.32 22.36 0.14 -2.08 16 21 Cl -0.08 -2.42 28.95 -2.72 -0.08 -2.50 16 22 C -0.10 -4.23 9.82 22.27 0.22 -4.01 16 23 C -0.08 -4.01 8.67 22.41 0.19 -3.82 16 24 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.09 1.72 8.07 -2.39 -0.02 1.70 16 28 H 0.08 1.70 7.99 -2.39 -0.02 1.68 16 29 H 0.06 2.10 8.04 -2.39 -0.02 2.08 16 30 H 0.06 2.31 6.12 -2.39 -0.01 2.30 16 31 H 0.08 1.94 8.03 -2.39 -0.02 1.92 16 32 H 0.13 4.88 6.12 -2.91 -0.02 4.86 16 33 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 34 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 35 H 0.14 4.84 8.06 -2.91 -0.02 4.82 16 36 H 0.14 4.91 8.06 -2.91 -0.02 4.88 16 37 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -59.06 328.09 6.51 -52.55 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 1.07 Total: 25.64 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 4.56 Total: -17.01 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: -1.01 Total: -67.29 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.06 Total: -32.16 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -0.08 Total: -2.50 kcal Total: -59.06 6.51 -52.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843611671.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.959 kcal (2) G-P(sol) polarization free energy of solvation -59.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds