Wall clock time and date at job start Tue Mar 31 2020 06:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38035 * 120.34250 * 2 1 4 4 N 1.32029 * 121.15106 * 180.02562 * 3 2 1 5 5 C 1.32335 * 121.61873 * 0.02562 * 4 3 2 6 6 C 1.39656 * 120.28599 * 359.89864 * 5 4 3 7 7 C 1.38619 * 119.37923 * 0.11968 * 6 5 4 8 8 N 1.40246 * 120.11303 * 180.21766 * 6 5 4 9 9 C 1.34779 * 120.66691 * 163.69020 * 8 6 5 10 10 O 1.21291 * 120.00529 * 354.27369 * 9 8 6 11 11 C 1.50701 * 119.99741 * 174.27335 * 9 8 6 12 12 S 1.80999 * 109.47100 * 185.53188 * 11 9 8 13 13 C 1.76205 * 100.00059 * 179.97438 * 12 11 9 14 14 H 1.07998 * 119.99761 * 0.02562 * 13 12 11 15 15 C 1.38802 * 119.99781 * 180.02562 * 13 12 11 16 16 N 1.31622 * 120.00242 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99755 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.47164 * 59.99801 * 17 15 13 19 19 H 1.48497 * 109.47075 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47151 * 300.00055 * 17 15 13 21 21 C 1.47107 * 118.69539 * 343.74879 * 8 6 5 22 22 C 1.53556 * 108.10885 * 44.54439 * 21 8 6 23 23 N 1.39511 * 120.11235 * 179.88346 * 5 4 3 24 24 H 1.09004 * 109.46796 * 270.02437 * 1 2 3 25 25 H 1.09001 * 109.46793 * 30.02343 * 1 2 3 26 26 H 1.08995 * 109.47309 * 150.02354 * 1 2 3 27 27 H 1.08004 * 119.42761 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.87240 * 179.91725 * 7 6 5 29 29 H 1.09004 * 109.47341 * 305.53249 * 11 9 8 30 30 H 1.08998 * 109.47095 * 65.53251 * 11 9 8 31 31 H 0.97000 * 120.00237 * 180.02562 * 16 15 13 32 32 H 1.08999 * 109.69726 * 284.91138 * 21 8 6 33 33 H 1.09000 * 109.77563 * 164.21931 * 21 8 6 34 34 H 1.09005 * 109.69376 * 183.72704 * 22 21 8 35 35 H 1.09005 * 109.69362 * 63.18700 * 22 21 8 36 36 H 0.97005 * 120.54195 * 343.09514 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1913 0.0000 4 7 3.5245 1.2099 -0.0005 5 6 4.2341 0.0929 -0.0015 6 6 3.5939 -1.1482 0.0000 7 6 2.2086 -1.1989 0.0001 8 7 4.3495 -2.3297 0.0035 9 6 3.7820 -3.5077 0.3306 10 8 2.6357 -3.5398 0.7258 11 6 4.5718 -4.7850 0.2054 12 16 3.4955 -6.1969 0.5579 13 6 4.6428 -7.5171 0.3443 14 1 5.6666 -7.3044 0.0743 15 6 4.2306 -8.8304 0.5231 16 7 2.9827 -9.0896 0.8517 17 14 5.4471 -10.2300 0.2973 18 1 6.5679 -10.0716 1.2587 19 1 4.7632 -11.5248 0.5440 20 1 5.9774 -10.2060 -1.0896 21 6 5.7742 -2.2581 -0.3556 22 6 6.3889 -1.0517 0.3688 23 7 5.6281 0.1493 -0.0045 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5134 27 1 1.6606 2.1244 0.0004 28 1 1.6886 -2.1455 0.0000 29 1 4.9645 -4.8716 -0.8078 30 1 5.3985 -4.7721 0.9156 31 1 2.6948 -10.0074 0.9770 32 1 5.8755 -2.1309 -1.4334 33 1 6.2797 -3.1718 -0.0431 34 1 7.4304 -0.9348 0.0690 35 1 6.3319 -1.2024 1.4469 36 1 6.0878 0.9678 -0.2487 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857995804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:44 Heat of formation + Delta-G solvation = 19.070019 kcal Electronic energy + Delta-G solvation = -20735.516324 eV Core-core repulsion = 17539.255256 eV Total energy + Delta-G solvation = -3196.261068 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.18174 -39.02920 -37.23791 -34.62984 -32.73819 -32.49820 -31.75389 -29.35153 -28.00830 -26.28278 -25.55968 -23.86464 -23.47332 -21.20487 -19.32358 -18.00491 -17.78101 -17.22217 -17.04526 -15.94933 -15.49005 -14.92776 -14.86448 -14.50238 -14.30987 -14.15841 -13.75366 -13.39729 -13.19363 -12.95204 -12.81130 -12.63341 -12.36925 -12.06528 -12.02983 -11.67620 -11.11312 -11.08869 -10.84648 -10.57278 -10.09167 -9.94083 -9.85816 -9.16164 -9.12326 -8.53324 -8.34531 -7.40701 -6.59422 -6.28236 -4.00327 1.24614 1.47441 2.60420 2.81674 3.00320 3.18696 3.19154 3.24751 3.43112 3.94715 4.12779 4.42901 4.52315 4.75100 4.82375 4.89170 4.96945 5.07214 5.08330 5.19231 5.25262 5.26787 5.47542 5.57933 5.67969 5.70454 5.85589 5.93995 5.95839 5.99370 6.36745 6.46724 6.64482 7.04007 7.22716 7.48057 7.52505 8.11958 8.27337 8.28360 9.16965 10.79122 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.003862 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.977910 B = 7249.271637 C = 8276.369843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.166 4.166 3 C 0.108 3.892 4 N -0.518 5.518 5 C 0.362 3.638 6 C 0.063 3.937 7 C -0.069 4.069 8 N -0.555 5.555 9 C 0.534 3.466 10 O -0.493 6.493 11 C -0.151 4.151 12 S -0.056 6.056 13 C -0.538 4.538 14 H 0.073 0.927 15 C 0.075 3.925 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.274 1.274 21 C 0.084 3.916 22 C 0.116 3.884 23 N -0.734 5.734 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.152 0.848 28 H 0.169 0.831 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.270 0.730 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.678 18.249 -3.076 19.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.170 4.170 3 C -0.049 4.049 4 N -0.234 5.234 5 C 0.125 3.875 6 C -0.037 4.037 7 C -0.097 4.097 8 N -0.281 5.281 9 C 0.323 3.677 10 O -0.367 6.367 11 C -0.301 4.301 12 S 0.171 5.829 13 C -0.686 4.686 14 H 0.091 0.909 15 C -0.134 4.134 16 N -0.502 5.502 17 Si 0.745 3.255 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.040 4.040 22 C -0.010 4.010 23 N -0.371 5.371 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.170 0.830 28 H 0.186 0.814 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.350 18.583 -2.474 19.044 hybrid contribution 2.053 -1.317 -0.566 2.504 sum 5.402 17.266 -3.040 18.345 Atomic orbital electron populations 1.20584 0.90246 1.02614 1.02286 1.20640 0.97522 0.93176 1.05707 1.22146 0.88236 0.97434 0.97088 1.67141 1.08648 1.28209 1.19396 1.17991 0.85531 0.87633 0.96360 1.18260 0.91800 0.85210 1.08457 1.21990 0.91573 1.00594 0.95511 1.45672 1.10231 1.05664 1.66582 1.20572 0.87511 0.83762 0.75823 1.90583 1.17740 1.85653 1.42689 1.23583 1.04171 0.97184 1.05209 1.85427 1.13665 0.92838 1.90973 1.22801 0.97936 0.92446 1.55442 0.90876 1.24986 0.95825 0.98211 0.94413 1.69994 1.15519 1.20738 1.43912 0.86217 0.80336 0.80063 0.78852 1.19889 1.20762 1.19889 1.22403 0.80371 1.00450 1.00744 1.21890 0.95542 0.84039 0.99551 1.44226 1.01285 1.14717 1.76921 0.91333 0.91711 0.91410 0.83029 0.81364 0.88923 0.88742 0.92021 0.90071 0.87405 0.88115 0.91390 0.75724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 10.03 36.01 0.36 -0.68 16 2 C -0.17 -2.21 5.90 -104.45 -0.62 -2.83 16 3 C 0.11 1.37 10.83 -17.54 -0.19 1.18 16 4 N -0.52 -7.30 10.40 -12.18 -0.13 -7.43 16 5 C 0.36 5.12 7.56 -154.38 -1.17 3.95 16 6 C 0.06 0.99 6.32 -83.34 -0.53 0.47 16 7 C -0.07 -1.11 8.65 -39.19 -0.34 -1.45 16 8 N -0.55 -8.43 2.98 -112.43 -0.34 -8.77 16 9 C 0.53 9.95 7.58 -10.98 -0.08 9.86 16 10 O -0.49 -10.74 12.81 5.55 0.07 -10.67 16 11 C -0.15 -2.90 4.57 36.01 0.16 -2.74 16 12 S -0.06 -1.45 20.58 -107.50 -2.21 -3.67 16 13 C -0.54 -14.80 9.50 30.94 0.29 -14.51 16 14 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 15 C 0.08 2.09 5.49 -17.43 -0.10 1.99 16 16 N -0.87 -25.54 13.22 55.49 0.73 -24.80 16 17 Si 0.92 20.81 29.55 -169.99 -5.02 15.79 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 21 C 0.08 0.89 6.36 -3.42 -0.02 0.87 16 22 C 0.12 1.00 7.26 -3.49 -0.03 0.97 16 23 N -0.73 -7.82 5.85 -59.51 -0.35 -8.17 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 27 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 28 H 0.17 3.04 5.39 -52.49 -0.28 2.76 16 29 H 0.09 1.62 8.05 -51.91 -0.42 1.20 16 30 H 0.09 1.64 7.62 -51.92 -0.40 1.25 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.11 1.00 6.28 -51.93 -0.33 0.67 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.41 3.56 8.96 -40.82 -0.37 3.20 16 LS Contribution 315.98 15.07 4.76 4.76 Total: -1.00 -34.07 315.98 -9.01 -43.08 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.29 Total: 2.78 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -2.25 Total: -2.91 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.08 Total: -49.17 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.67 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.07 -9.01 -43.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857995804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.148 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds