Wall clock time and date at job start Tue Mar 31 2020 06:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38035 * 120.34250 * 2 1 4 4 N 1.32029 * 121.15106 * 180.02562 * 3 2 1 5 5 C 1.32335 * 121.61873 * 0.02562 * 4 3 2 6 6 C 1.39656 * 120.28599 * 359.89864 * 5 4 3 7 7 C 1.38619 * 119.37923 * 0.11968 * 6 5 4 8 8 N 1.40246 * 120.11303 * 180.21766 * 6 5 4 9 9 C 1.34779 * 120.66691 * 163.69020 * 8 6 5 10 10 O 1.21291 * 120.00529 * 354.27369 * 9 8 6 11 11 C 1.50701 * 119.99741 * 174.27335 * 9 8 6 12 12 S 1.80999 * 109.47100 * 185.53188 * 11 9 8 13 13 C 1.76205 * 100.00059 * 179.97438 * 12 11 9 14 14 H 1.07998 * 119.99761 * 0.02562 * 13 12 11 15 15 C 1.38802 * 119.99781 * 180.02562 * 13 12 11 16 16 N 1.31622 * 120.00242 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99755 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.47164 * 59.99801 * 17 15 13 19 19 H 1.48497 * 109.47075 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47151 * 300.00055 * 17 15 13 21 21 C 1.47107 * 118.69539 * 343.74879 * 8 6 5 22 22 C 1.53556 * 108.10885 * 44.54439 * 21 8 6 23 23 N 1.39511 * 120.11235 * 179.88346 * 5 4 3 24 24 H 1.09004 * 109.46796 * 270.02437 * 1 2 3 25 25 H 1.09001 * 109.46793 * 30.02343 * 1 2 3 26 26 H 1.08995 * 109.47309 * 150.02354 * 1 2 3 27 27 H 1.08004 * 119.42761 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.87240 * 179.91725 * 7 6 5 29 29 H 1.09004 * 109.47341 * 305.53249 * 11 9 8 30 30 H 1.08998 * 109.47095 * 65.53251 * 11 9 8 31 31 H 0.97000 * 120.00237 * 180.02562 * 16 15 13 32 32 H 1.08999 * 109.69726 * 284.91138 * 21 8 6 33 33 H 1.09000 * 109.77563 * 164.21931 * 21 8 6 34 34 H 1.09005 * 109.69376 * 183.72704 * 22 21 8 35 35 H 1.09005 * 109.69362 * 63.18700 * 22 21 8 36 36 H 0.97005 * 120.54195 * 343.09514 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1913 0.0000 4 7 3.5245 1.2099 -0.0005 5 6 4.2341 0.0929 -0.0015 6 6 3.5939 -1.1482 0.0000 7 6 2.2086 -1.1989 0.0001 8 7 4.3495 -2.3297 0.0035 9 6 3.7820 -3.5077 0.3306 10 8 2.6357 -3.5398 0.7258 11 6 4.5718 -4.7850 0.2054 12 16 3.4955 -6.1969 0.5579 13 6 4.6428 -7.5171 0.3443 14 1 5.6666 -7.3044 0.0743 15 6 4.2306 -8.8304 0.5231 16 7 2.9827 -9.0896 0.8517 17 14 5.4471 -10.2300 0.2973 18 1 6.5679 -10.0716 1.2587 19 1 4.7632 -11.5248 0.5440 20 1 5.9774 -10.2060 -1.0896 21 6 5.7742 -2.2581 -0.3556 22 6 6.3889 -1.0517 0.3688 23 7 5.6281 0.1493 -0.0045 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5134 27 1 1.6606 2.1244 0.0004 28 1 1.6886 -2.1455 0.0000 29 1 4.9645 -4.8716 -0.8078 30 1 5.3985 -4.7721 0.9156 31 1 2.6948 -10.0074 0.9770 32 1 5.8755 -2.1309 -1.4334 33 1 6.2797 -3.1718 -0.0431 34 1 7.4304 -0.9348 0.0690 35 1 6.3319 -1.2024 1.4469 36 1 6.0878 0.9678 -0.2487 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857995804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:44 Heat of formation + Delta-G solvation = -4.093068 kcal Electronic energy + Delta-G solvation = -20736.520751 eV Core-core repulsion = 17539.255256 eV Total energy + Delta-G solvation = -3197.265495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.31397 -40.28296 -38.27851 -35.76354 -34.58862 -33.71999 -32.88653 -30.65007 -29.07413 -27.67334 -27.23969 -25.00538 -24.36684 -22.36762 -20.56083 -19.64434 -18.81686 -18.54601 -18.28178 -17.14531 -16.88158 -16.66970 -16.11410 -15.79660 -15.62478 -15.22037 -14.97883 -14.59174 -14.34745 -14.25271 -14.10166 -13.81804 -13.38017 -13.22581 -13.13679 -12.87244 -12.85903 -12.65036 -12.57050 -11.79974 -11.66849 -11.24096 -11.12813 -10.95683 -10.38205 -10.29894 -9.64610 -8.69727 -8.40918 -8.34914 -6.13864 0.13398 0.36264 1.15193 1.41994 1.44443 1.45795 1.53915 1.85113 2.14978 2.26283 2.87358 2.99914 3.13349 3.48717 3.67706 3.75016 3.91391 4.04843 4.09869 4.17518 4.19012 4.22207 4.33347 4.41037 4.57667 4.81405 4.83630 4.87733 4.92476 5.11252 5.32761 5.41811 5.46521 5.65417 5.99247 6.04805 6.19435 6.62170 6.90351 7.06570 7.12739 8.74015 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.003862 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.977910 B = 7249.271637 C = 8276.369843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.173 4.173 3 C 0.115 3.885 4 N -0.528 5.528 5 C 0.361 3.639 6 C 0.034 3.966 7 C -0.092 4.092 8 N -0.547 5.547 9 C 0.530 3.470 10 O -0.538 6.538 11 C -0.122 4.122 12 S -0.147 6.147 13 C -0.546 4.546 14 H 0.087 0.913 15 C 0.015 3.985 16 N -0.912 5.912 17 Si 0.998 3.002 18 H -0.261 1.261 19 H -0.281 1.281 20 H -0.261 1.261 21 C 0.072 3.928 22 C 0.118 3.882 23 N -0.724 5.724 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.056 0.944 27 H 0.188 0.812 28 H 0.140 0.860 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.271 0.729 32 H 0.095 0.905 33 H 0.123 0.877 34 H 0.149 0.851 35 H 0.061 0.939 36 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.419 19.854 -3.791 21.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.178 4.178 3 C -0.042 4.042 4 N -0.245 5.245 5 C 0.123 3.877 6 C -0.066 4.066 7 C -0.120 4.120 8 N -0.272 5.272 9 C 0.319 3.681 10 O -0.414 6.414 11 C -0.273 4.273 12 S 0.080 5.920 13 C -0.694 4.694 14 H 0.105 0.895 15 C -0.190 4.190 16 N -0.548 5.548 17 Si 0.819 3.181 18 H -0.185 1.185 19 H -0.206 1.206 20 H -0.186 1.186 21 C -0.050 4.050 22 C -0.007 4.007 23 N -0.362 5.362 24 H 0.091 0.909 25 H 0.112 0.888 26 H 0.075 0.925 27 H 0.205 0.795 28 H 0.157 0.843 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.141 0.859 34 H 0.167 0.833 35 H 0.080 0.920 36 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.156 20.237 -3.205 21.394 hybrid contribution 1.202 -1.627 -0.366 2.056 sum 7.358 18.610 -3.571 20.328 Atomic orbital electron populations 1.20627 0.88436 1.03545 1.02852 1.20915 0.98937 0.92543 1.05360 1.22725 0.88083 0.98385 0.95015 1.67290 1.09295 1.27936 1.19938 1.18183 0.87042 0.86917 0.95562 1.18432 0.91900 0.85917 1.10345 1.21940 0.92452 1.00575 0.97062 1.45638 1.11942 1.04409 1.65258 1.20462 0.86952 0.84662 0.75996 1.90584 1.19484 1.86382 1.44998 1.23371 1.02830 0.94194 1.06869 1.85641 1.17729 0.96958 1.91630 1.23172 0.98341 0.92803 1.55086 0.89505 1.26112 0.97779 1.01299 0.93792 1.70170 1.17939 1.21336 1.45369 0.85013 0.77678 0.75912 0.79464 1.18536 1.20645 1.18556 1.22836 0.77783 1.02333 1.02029 1.22105 0.97374 0.82250 0.98982 1.44357 0.99972 1.15963 1.75904 0.90873 0.88783 0.92456 0.79512 0.84267 0.86789 0.86428 0.91997 0.88647 0.85889 0.83326 0.92042 0.74393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 10.03 71.24 0.71 -1.26 16 2 C -0.17 -4.58 5.90 -19.75 -0.12 -4.69 16 3 C 0.11 2.70 10.83 84.61 0.92 3.61 16 4 N -0.53 -13.90 10.40 -192.44 -2.00 -15.90 16 5 C 0.36 9.67 7.56 133.04 1.01 10.68 16 6 C 0.03 1.08 6.32 38.23 0.24 1.32 16 7 C -0.09 -3.10 8.65 22.52 0.19 -2.91 16 8 N -0.55 -16.36 2.98 -627.99 -1.87 -18.24 16 9 C 0.53 20.17 7.58 87.66 0.66 20.83 16 10 O -0.54 -24.87 12.81 -3.06 -0.04 -24.90 16 11 C -0.12 -4.64 4.57 71.24 0.33 -4.32 16 12 S -0.15 -7.93 20.58 -56.49 -1.16 -9.10 16 13 C -0.55 -30.18 9.50 67.95 0.65 -29.54 16 14 H 0.09 4.37 7.80 -2.91 -0.02 4.35 16 15 C 0.02 0.84 5.49 84.86 0.47 1.30 16 16 N -0.91 -55.15 13.22 21.65 0.29 -54.86 16 17 Si 1.00 42.38 29.55 68.60 2.03 44.41 16 18 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 19 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 21 C 0.07 1.33 6.36 86.45 0.55 1.88 16 22 C 0.12 1.62 7.26 86.47 0.63 2.25 16 23 N -0.72 -13.39 5.85 -342.20 -2.00 -15.39 16 24 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.09 1.33 8.09 -2.39 -0.02 1.31 16 26 H 0.06 1.27 8.09 -2.39 -0.02 1.25 16 27 H 0.19 2.93 8.06 -2.91 -0.02 2.91 16 28 H 0.14 5.50 5.39 -2.91 -0.02 5.49 16 29 H 0.11 3.84 8.05 -2.39 -0.02 3.82 16 30 H 0.12 3.92 7.62 -2.40 -0.02 3.90 16 31 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.12 1.88 6.28 -2.39 -0.01 1.87 16 34 H 0.15 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.42 5.93 8.96 -92.70 -0.83 5.10 16 Total: -1.00 -78.08 315.98 1.76 -76.32 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.29 Total: 18.49 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 6.24 Total: -0.83 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -5.59 Total: -104.38 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.04 Total: -24.90 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.16 Total: -9.10 kcal Total: -78.08 1.76 -76.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857995804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.230 kcal (2) G-P(sol) polarization free energy of solvation -78.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds