Wall clock time and date at job start Tue Mar 31 2020 06:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86795 * 120.00247 * 2 1 4 4 H 1.48497 * 109.47406 * 274.99623 * 3 2 1 5 5 H 1.48505 * 109.47082 * 34.99319 * 3 2 1 6 6 H 1.48504 * 109.47381 * 154.99207 * 3 2 1 7 7 C 1.40037 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99829 * 144.20232 * 7 2 1 9 9 C 1.41542 * 119.99869 * 323.92795 * 7 2 1 10 10 C 1.41160 * 120.99707 * 345.33577 * 9 7 2 11 11 C 1.36594 * 119.12595 * 179.97438 * 10 9 7 12 12 N 1.32070 * 121.25736 * 359.97438 * 11 10 9 13 13 C 1.32489 * 122.23219 * 0.02562 * 12 11 10 14 14 N 1.39454 * 119.64879 * 180.02562 * 13 12 11 15 15 C 1.34783 * 120.00061 * 355.27708 * 14 13 12 16 16 O 1.21581 * 120.00077 * 5.94768 * 15 14 13 17 17 N 1.34778 * 120.00133 * 185.94793 * 15 14 13 18 18 C 1.46497 * 119.99759 * 180.02562 * 17 15 14 19 19 H 1.08996 * 108.83126 * 325.69464 * 18 17 15 20 20 C 1.52338 * 108.86569 * 207.16738 * 18 17 15 21 21 C 1.54258 * 112.58949 * 239.18306 * 20 18 17 22 22 S 1.83959 * 102.58219 * 24.52432 * 21 20 18 23 23 C 1.54255 * 108.87226 * 84.23035 * 18 17 15 24 24 C 1.38644 * 120.70369 * 359.73679 * 13 12 11 25 25 H 0.97003 * 119.99786 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.43993 * 359.95657 * 10 9 7 27 27 H 1.07995 * 119.36763 * 180.02562 * 11 10 9 28 28 H 0.97003 * 120.00538 * 175.27822 * 14 13 12 29 29 H 0.97000 * 119.99829 * 359.97438 * 17 15 14 30 30 H 1.09000 * 108.86881 * 0.02562 * 20 18 17 31 31 H 1.09004 * 108.87079 * 118.35972 * 20 18 17 32 32 H 1.08994 * 110.78921 * 142.80041 * 21 20 18 33 33 H 1.09007 * 110.78379 * 266.25500 * 21 20 18 34 34 H 1.09001 * 110.78962 * 214.56198 * 23 18 17 35 35 H 1.09009 * 110.78600 * 338.01720 * 23 18 17 36 36 H 1.07997 * 120.66420 * 180.29344 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3834 2.1073 -1.3947 5 1 1.4957 2.6199 0.8029 6 1 3.5878 1.4119 0.5919 7 6 2.0076 -1.2128 -0.0005 8 1 2.9345 -1.3009 -0.5477 9 6 1.5033 -2.3213 0.7207 10 6 0.4840 -2.1594 1.6837 11 6 0.0253 -3.2556 2.3572 12 7 0.5169 -4.4589 2.1232 13 6 1.4736 -4.6702 1.2314 14 7 1.9529 -5.9638 1.0272 15 6 1.5118 -6.9758 1.8005 16 8 0.6186 -6.7833 2.6025 17 7 2.0610 -8.2012 1.6847 18 6 1.5812 -9.3012 2.5248 19 1 1.2972 -8.9022 3.4986 20 6 2.7110 -10.3053 2.7143 21 6 2.3451 -11.7130 2.2003 22 16 1.0457 -11.3570 0.9478 23 6 0.3385 -9.9301 1.8617 24 6 1.9994 -3.6198 0.4948 25 1 -0.4850 0.8401 -0.0004 26 1 0.0724 -1.1815 1.8856 27 1 -0.7548 -3.1362 3.0944 28 1 2.6037 -6.1354 0.3286 29 1 2.7734 -8.3548 1.0445 30 1 3.5910 -9.9513 2.1773 31 1 2.9517 -10.3691 3.7755 32 1 3.2078 -12.1920 1.7374 33 1 1.9465 -12.3279 3.0073 34 1 -0.3726 -10.2685 2.6153 35 1 -0.1307 -9.2265 1.1739 36 1 2.7760 -3.7935 -0.2353 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871725051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:19 Heat of formation + Delta-G solvation = 12.454878 kcal Electronic energy + Delta-G solvation = -20381.073372 eV Core-core repulsion = 17184.525450 eV Total energy + Delta-G solvation = -3196.547922 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.00988 -38.26548 -36.60692 -34.45891 -33.64288 -32.46541 -30.73472 -29.45437 -28.17911 -26.02209 -25.25421 -22.28659 -21.68982 -20.63010 -20.20765 -18.13727 -17.91274 -16.68221 -16.44356 -15.74336 -15.27907 -14.96863 -14.55613 -14.39401 -14.19684 -14.12783 -13.65600 -13.08086 -12.97570 -12.58927 -12.43552 -12.27821 -12.10578 -11.92501 -11.52323 -11.33635 -11.30740 -10.92355 -10.47347 -10.19806 -10.12968 -9.74797 -9.59422 -9.17599 -8.99644 -8.14530 -7.91682 -7.66171 -7.09647 -6.98430 -4.58677 1.64923 2.08972 2.73209 2.74584 2.89873 2.98776 3.02869 3.27376 3.76666 3.79530 4.25220 4.41221 4.50167 4.54209 4.62970 4.84568 5.07821 5.19968 5.30770 5.48468 5.65860 5.71492 5.77178 5.97589 6.53466 6.56795 6.63779 6.79405 6.85193 7.04803 7.24492 7.43853 7.51727 7.82051 8.06889 8.29394 8.45545 8.69700 8.74298 9.10432 9.77897 9.86154 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.045432 B = 0.002856 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.164418 B = 9800.119068 C = 9976.145033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.093 3.907 3 Si 0.899 3.101 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.461 4.461 8 H 0.085 0.915 9 C 0.147 3.853 10 C -0.248 4.248 11 C 0.113 3.887 12 N -0.563 5.563 13 C 0.373 3.627 14 N -0.669 5.669 15 C 0.690 3.310 16 O -0.529 6.529 17 N -0.747 5.747 18 C 0.164 3.836 19 H 0.102 0.898 20 C -0.133 4.133 21 C -0.066 4.066 22 S -0.304 6.304 23 C -0.072 4.072 24 C -0.319 4.319 25 H 0.287 0.713 26 H 0.114 0.886 27 H 0.120 0.880 28 H 0.403 0.597 29 H 0.393 0.607 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.935 -15.017 2.493 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.132 4.132 3 Si 0.722 3.278 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.489 4.489 8 H 0.103 0.897 9 C 0.139 3.861 10 C -0.272 4.272 11 C -0.037 4.037 12 N -0.283 5.283 13 C 0.145 3.855 14 N -0.317 5.317 15 C 0.390 3.610 16 O -0.399 6.399 17 N -0.405 5.405 18 C 0.056 3.944 19 H 0.120 0.880 20 C -0.172 4.172 21 C -0.214 4.214 22 S -0.079 6.079 23 C -0.221 4.221 24 C -0.346 4.346 25 H 0.098 0.902 26 H 0.132 0.868 27 H 0.138 0.862 28 H 0.237 0.763 29 H 0.227 0.773 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.218 -15.983 2.693 16.748 hybrid contribution 1.542 1.874 -0.239 2.439 sum 5.760 -14.109 2.454 15.436 Atomic orbital electron populations 1.69924 1.08425 1.30387 1.28607 1.26029 0.94277 1.01887 0.91053 0.86463 0.81609 0.80433 0.79339 1.19294 1.19695 1.17921 1.19506 1.07509 0.94255 1.27674 0.89706 1.17448 0.88665 0.90759 0.89216 1.21715 1.04386 0.99040 1.02027 1.21516 0.97123 0.87769 0.97259 1.67216 1.14818 1.24511 1.21732 1.17757 0.92477 0.81821 0.93469 1.42576 1.46247 1.06107 1.36730 1.16127 0.82618 0.79968 0.82316 1.91028 1.29765 1.81521 1.37625 1.45481 1.42432 1.08297 1.44328 1.21177 0.91085 0.86792 0.95368 0.87997 1.22312 0.99059 0.92529 1.03347 1.24144 0.99283 0.99147 0.98864 1.88062 1.42464 1.43126 1.34202 1.24752 1.00002 0.96046 1.01328 1.20974 1.11564 0.92311 1.09742 0.90220 0.86775 0.86233 0.76324 0.77254 0.89619 0.89464 0.87618 0.89049 0.88551 0.87068 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.50 11.63 55.55 0.65 -17.85 16 2 C 0.09 2.21 4.81 -17.34 -0.08 2.13 16 3 Si 0.90 17.47 29.67 -169.99 -5.04 12.43 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.46 -11.75 9.01 -37.65 -0.34 -12.08 16 8 H 0.08 2.06 8.04 -52.49 -0.42 1.64 16 9 C 0.15 3.87 5.66 -106.55 -0.60 3.27 16 10 C -0.25 -6.47 8.89 -39.07 -0.35 -6.82 16 11 C 0.11 2.87 11.10 -18.04 -0.20 2.67 16 12 N -0.56 -14.57 7.86 -12.76 -0.10 -14.67 16 13 C 0.37 8.84 7.42 -154.68 -1.15 7.70 16 14 N -0.67 -12.40 5.40 -15.86 -0.09 -12.49 16 15 C 0.69 12.49 8.39 -86.91 -0.73 11.76 16 16 O -0.53 -11.96 14.24 5.29 0.08 -11.89 16 17 N -0.75 -9.30 4.91 -58.37 -0.29 -9.58 16 18 C 0.16 1.78 2.94 -67.61 -0.20 1.58 16 19 H 0.10 1.27 7.52 -51.93 -0.39 0.88 16 20 C -0.13 -0.98 6.09 -26.41 -0.16 -1.14 16 21 C -0.07 -0.46 7.46 37.82 0.28 -0.18 16 22 S -0.30 -3.25 23.26 -107.50 -2.50 -5.75 16 23 C -0.07 -0.82 7.07 37.81 0.27 -0.55 16 24 C -0.32 -7.73 9.74 -38.45 -0.37 -8.10 16 25 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 26 H 0.11 2.97 6.31 -52.48 -0.33 2.64 16 27 H 0.12 2.72 8.06 -52.49 -0.42 2.30 16 28 H 0.40 5.80 8.72 -40.82 -0.36 5.44 16 29 H 0.39 3.82 8.24 -40.82 -0.34 3.48 16 30 H 0.09 0.57 7.44 -51.93 -0.39 0.18 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.11 1.53 7.94 -51.92 -0.41 1.12 16 36 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 318.07 15.07 4.79 4.79 Total: -1.00 -32.03 318.07 -10.44 -42.47 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -4.31 Total: 12.33 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -3.64 Total: 0.22 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.17 Total: -54.60 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.89 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.04 Total: 12.43 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -2.50 Total: -5.75 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.03 -10.44 -42.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.925 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds